View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0748_high_4 (Length: 411)
Name: NF0748_high_4
Description: NF0748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0748_high_4 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 411
Target Start/End: Original strand, 3242359 - 3242774
Alignment:
| Q |
1 |
atcatgcagaccattctttctcttggcaatgctttgaatcatggaactgcaagaggtaaattgaagctttagcatttgctatttcactgtcatgaagcat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3242359 |
atcatgcagaccattctttctcttggcaatgctttgaatcatggaactgcaagaggtaaattgaagctttagcatttgctatttcactgtcatgaagcat |
3242458 |
T |
|
| Q |
101 |
atgttgatagattcaggccctagannnnnnnnnnn-----ggaaatctaacatgaacgtttcggctagtctaagtcatataatttatgtgcatcttgtag |
195 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3242459 |
atgttgatagattcaggccctagattttttttttttttttggaaatctaacatgaacgtttcggctagtctaagtcatataatttatgtgcatcttgtag |
3242558 |
T |
|
| Q |
196 |
ttagtattcgacatttacttttggtctttagatgactaatattttattggaaaacagcgccacattagtcttacttgctttcttaataggtaatttatat |
295 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
3242559 |
ttagtgttcgacatttacttttggtctttagatgactaatattttattggaaaacagcgccacattagtcttaattgctttcttaataggtaatttatat |
3242658 |
T |
|
| Q |
296 |
gattactgtaggttctgctgttgggttccgtttggatagtcttcttaaactcactgatacacgagcccgaaacaccaaactgaccctcatgcattctctt |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||| |
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| T |
3242659 |
gattactgtaggttctgctgttgggttccgtttggatagtcttcttaaactcactgatacacgagcccgaaacaacaaaatgaccctcatgcattatctt |
3242758 |
T |
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| Q |
396 |
tgtaaggtaaacactc |
411 |
Q |
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|||||||||||||||| |
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| T |
3242759 |
tgtaaggtaaacactc |
3242774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 304 - 404
Target Start/End: Original strand, 54644634 - 54644734
Alignment:
| Q |
304 |
taggttctgctgttgggttccgtttggatagtcttcttaaactcactgatacacgagcccgaaacaccaaactgaccctcatgcattctctttgtaaggt |
403 |
Q |
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||||||||||| |||| ||| | || ||||| |||||||||||||| || ||||| || || |||| |||| |||| |||||||||| |||||||||||| |
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| T |
54644634 |
taggttctgctattggattcagattagatagccttcttaaactcaccgagacacgggcacggaacaacaaaatgactctcatgcattatctttgtaaggt |
54644733 |
T |
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| Q |
404 |
a |
404 |
Q |
| |
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| |
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| T |
54644734 |
a |
54644734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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