View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0748_high_7 (Length: 363)
Name: NF0748_high_7
Description: NF0748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0748_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 63 - 349
Target Start/End: Complemental strand, 9176134 - 9175848
Alignment:
| Q |
63 |
tcagcatatcacccagagaaaataagttcttaacagttggttgtaacagtctcggtgttctcagaagcatttacggcaaagaaagatattacaccggctg |
162 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
9176134 |
tcagcatatcacccagagaaaataagttcttaacagttggttgtaacagtctcggtgttctcagaagcatttacgacaaagaaagatattacaccggctg |
9176035 |
T |
|
| Q |
163 |
cttgacaatatgcaacggtactcgaaacagaattgaaaacggaatatgttcgggtattggttgttgtcaagttgatattccacctatgatgaggaatata |
262 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9176034 |
cttaacaatatgcaacggtactcgaaacagaattgaaaacggagcatgttcgggtattggttgttgtcaagttgatattccacctatgatgaggaatata |
9175935 |
T |
|
| Q |
263 |
actatacaatcttctaattatctcgatttaaacgaatctttgggatgtagcaattcgtttgttgttaaaaatggattttataatttc |
349 |
Q |
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| T |
9175934 |
actatacaagcttctaattatctcgatttaaacgaatctttgggatgtagcaattcgtttgttgttaaaaatggattttataatttc |
9175848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 16 - 353
Target Start/End: Complemental strand, 9203210 - 9202873
Alignment:
| Q |
16 |
taacggaagttaccttcaaccctctttaggcattaatgacggcaggttcagcatatcacccagagaaaataagttcttaacagttggttgtaacagtctc |
115 |
Q |
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||||||||||||| |||| ||| ||||| |||| ||| ||||| |||||| ||||| |||||||||||||||| ||||||||||||||||||||| || |
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| T |
9203210 |
taacggaagttacaatcaatcctttttagacatttttgatggcagattcagcttatcaaccagagaaaataagtttttaacagttggttgtaacagtatc |
9203111 |
T |
|
| Q |
116 |
ggtgttctcagaagcatttacggcaaagaaagatattacaccggctgcttgacaatatgcaacggtactcgaaacagaattgaaaacggaatatgttcgg |
215 |
Q |
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||| |||||||||||| ||||| ||||||| || ||||||||| ||||| ||||||||| ||||||||||||||||||| ||||||||| |||||||| |
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| T |
9203110 |
ggttttctcagaagcacttacgagaaagaaacattttacaccggttgcttaacaatatgcgacggtactcgaaacagaatcgaaaacggagcatgttcgg |
9203011 |
T |
|
| Q |
216 |
gtattggttgttgtcaagttgatattccacctatgatgaggaatataactatacaatcttctaattatctcgatttaaacgaatctttgggatgtagcaa |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9203010 |
gtattggttgttgtcaagttgatattccacctatgatgaggaatataactatacaatcttctaattatctcgatttaaacgaatctttgggatgtagcaa |
9202911 |
T |
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| Q |
316 |
ttcgtttgttgttaaaaatggattttataatttctctg |
353 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
9202910 |
ttcgtttgttgttaaaaatggattttataatttctctg |
9202873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 55 - 353
Target Start/End: Original strand, 9114277 - 9114575
Alignment:
| Q |
55 |
cggcaggttcagcatatcacccagagaaaataagttcttaacagttggttgtaacagtctcggtgttctcagaagcatttacggcaaagaaagatattac |
154 |
Q |
| |
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||||| |||||||||||||| || |||||| ||||||||||||||||||||| | ||| |||| |||||| |||||||||| ||| |||| ||||| | |
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| T |
9114277 |
cggcacgttcagcatatcacgcaaagaaaacaagttcttaacagttggttgtgatagttacggtattctcaacagcatttacgacaaggaaacatattcc |
9114376 |
T |
|
| Q |
155 |
accggctgcttgacaatatgcaacggtactcgaaacagaattgaaaacggaatatgttcgggtattggttgttgtcaagttgatattccacctatgatga |
254 |
Q |
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| ||| ||||| |||||||| ||||||| |||||| ||||||||||| |||| |||||| ||||||||||||||| |||||||||||||||||| ||||| |
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| T |
9114377 |
atcggttgcttaacaatatgtaacggtaatcgaaagagaattgaaaatggaacatgttctggtattggttgttgtgaagttgatattccacctaagatga |
9114476 |
T |
|
| Q |
255 |
ggaatataactatacaatcttctaattatctcgatttaaacgaatctttgggatgtagcaattcgtttgttgttaaaaatggattttataatttctctg |
353 |
Q |
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|||||||||||||| || ||| | || | | ||| || ||||||||| ||||||| |||| |||||||||||||||||| ||||||||| |||| |
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| T |
9114477 |
ggaatataactatagaagcttttgctttttttaattccaatgaatctttgagatgtagatattcttttgttgttaaaaatggagcttataatttttctg |
9114575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 139 - 348
Target Start/End: Complemental strand, 9158101 - 9157892
Alignment:
| Q |
139 |
caaagaaagatattacaccggctgcttgacaatatgcaacggtactcgaaacagaattgaaaacggaatatgttcgggtattggttgttgtcaagttgat |
238 |
Q |
| |
|
|||||||| ||||| ||||| ||| |||||| ||| || |||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |
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| T |
9158101 |
caaagaaacatattcaaccggttgcctgacaagatgtaatggtaatcgaaacagaatagaaaacggaacatgttcgggtattggttgttgtcaagttgat |
9158002 |
T |
|
| Q |
239 |
attccacctatgatgaggaatataactatacaatcttctaattatctcgatttaaacgaatctttgggatgtagcaattcgtttgttgttaaaaatggat |
338 |
Q |
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||||||||||||||||||||||||| |||| || ||||| ||| || ||| | || |||||||| ||||| |||| |||||||||||| |||| | |
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| T |
9158001 |
attccacctatgatgaggaatataagtatagaagcttctgattttcctaattccacggattctttggggtgtagttattcatttgttgttaaagatgggt |
9157902 |
T |
|
| Q |
339 |
tttataattt |
348 |
Q |
| |
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|||||||||| |
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| T |
9157901 |
tttataattt |
9157892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 141 - 349
Target Start/End: Complemental strand, 9164214 - 9164006
Alignment:
| Q |
141 |
aagaaagatattacaccggctgcttgacaatatgcaacggtactcgaaacagaattgaaaacggaatatgttcgggtattggttgttgtcaagttgatat |
240 |
Q |
| |
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|||||| ||||| ||||| ||||| |||| ||| ||||||| |||||| |||| ||||| |||| ||||||||||||||||||||||||||||||||| |
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| T |
9164214 |
aagaaacatattcaaccggttgcttaacaagatgtaacggtaatcgaaatcgaatcgaaaatggaacatgttcgggtattggttgttgtcaagttgatat |
9164115 |
T |
|
| Q |
241 |
tccacctatgatgaggaatataactatacaatcttctaattatctcgatttaaacgaatctttgggatgtagcaattcgtttgttgttaaaaatggattt |
340 |
Q |
| |
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||||||||||||||||||||||| | ||||| ||| | ||| || ||| | || ||||| || ||||| |||| |||||||||||| |||||||| |
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| T |
9164114 |
tccacctatgatgaggaatataagtgtacaagcttttgattttcctaattccacggattctttagggtgtagttattcatttgttgttaaagatggattt |
9164015 |
T |
|
| Q |
341 |
tataatttc |
349 |
Q |
| |
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||||||||| |
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| T |
9164014 |
tataatttc |
9164006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 80 - 348
Target Start/End: Complemental strand, 9220610 - 9220342
Alignment:
| Q |
80 |
gaaaataagttcttaacagttggttgtaacagtctcggtgttctcagaagcatttacggcaaagaaagatattacaccggctgcttgacaatatgcaacg |
179 |
Q |
| |
|
||||| |||||| |||| ||||||||| ||||| |||| ||||| || |||||| | |||||| ||||| ||||| ||||| |||| ||| | | |
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| T |
9220610 |
gaaaacaagttcataacggttggttgtgacagttacggttatctcaacagtatttacaacgaagaaacatattcaaccggttgcttaacaagatgttatg |
9220511 |
T |
|
| Q |
180 |
gtactcgaaacagaattgaaaacggaatatgttcgggtattggttgttgtcaagttgatattccacctatgatgaggaatataactatacaatcttctaa |
279 |
Q |
| |
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||| ||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||| |||| | |
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| T |
9220510 |
gtaatcggaatcaaattgaaaacggaacatgttcgggtattggttgttgtcaagttgatattccacatatgatgaggaatataagtgtacaagtttctga |
9220411 |
T |
|
| Q |
280 |
ttatctcgatttaaacgaatctttgggatgtagcaattcgtttgttgttaaaaatggattttataattt |
348 |
Q |
| |
|
|| || ||| | || |||||||| ||||| |||| |||||||||||| |||||| |||||||| |
|
|
| T |
9220410 |
ttttcctaattccacggattctttggggtgtagttattcatttgttgttaaagatggatcctataattt |
9220342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 281
Target Start/End: Original strand, 1840314 - 1840392
Alignment:
| Q |
203 |
ggaatatgttcgggtattggttgttgtcaagttgatattccacctatgatgaggaatataactatacaatcttctaatt |
281 |
Q |
| |
|
|||| |||||||||||| || ||||| |||||||||||||| |||| ||||| |||||| ||||||| || |||||| |
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|
| T |
1840314 |
ggaacatgttcgggtatagggtgttgccaagttgatattcctcctagaatgagatatataagtatacaagctactaatt |
1840392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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