View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0748_low_1 (Length: 819)

Name: NF0748_low_1
Description: NF0748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0748_low_1
NF0748_low_1
[»] chr3 (1 HSPs)
chr3 (29-789)||(52238502-52239260)


Alignment Details
Target: chr3 (Bit Score: 683; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 683; E-Value: 0
Query Start/End: Original strand, 29 - 789
Target Start/End: Original strand, 52238502 - 52239260
Alignment:
Q  29 aaaagtcatccagcataaaacttataccagtagttccttacattcttacaaaaaacattactttagaagatttaaaaaatgttgagagatgaatgtttat 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52238502 aaaagtcatccagcataaaacttataccagtagttccttacattcttacaaaaaacattactttagaagatttaaaaaatgttgagagatgaatgtttat 52238601  T
Q  129 gaccaatttcaagcaagattctagaaattgcctatgaaagagacaaactttttgtaatgctaataaattgacccaaacatagtacctgtaaaatatcaaa 228  Q
    |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  52238602 gaccaatttcaagcaagattctagaaattgcctatgaaagagaca--ctttttgtaatgctaataaattgacccaaacatagtacctgcaaaatatcaaa 52238699  T
Q  229 aactttttctgcagtgtacttttggtctgaagtagcacccttttgctgcaacttatctggatgcagactgagtaaagctctttgataagatcttttaacc 328  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  52238700 aactttttctgcagtgtacttttggtctgaagtagcacccttttgctgcaacttatccggatgcagactgagtaaagctctttgataagatcttttaacc 52238799  T
Q  329 gcattcccttcaattatatcaacaagaggcacaggcttccagccacagtttggccaaagtacctttattcatgatggaagccattttaggacaattttgt 428  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  52238800 gcgttcccttcaattatatcaacaagaggcacaggcttccagccacagtttggccaaagtacctttattcatgatggaagccattttagaacaattttgt 52238899  T
Q  429 acttggatggaaccaaggatctaaaaaccttaactgaatcaatggttttacggcataccaacatgctttattgttgttaacaggaaataaaatatggaat 528  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52238900 acttggatggaaccaaggatctaaaaaccttaactgaatcaatggttttacggcataccaacatgctttattgttgttaacaggaaataaaatatggaat 52238999  T
Q  529 tttcaatcaaatgggttaagaatagtaagtactagacgannnnnnnnnnnnnnnnntattcttacgtattgtaatgttgacaacagtgagcgtatatttc 628  Q
    |||||||||||||||||||||||||||||||||||||||                 ||||||||||||||||||||||||||||||||||||||||||||    
T  52239000 tttcaatcaaatgggttaagaatagtaagtactagacgaacacacagacacacacatattcttacgtattgtaatgttgacaacagtgagcgtatatttc 52239099  T
Q  629 cttcctttcctttagaccattgttgtatcttcttgtcaatgacctatatcgtgtacagaaatatatgctcaatatcgttattcttctacaagttgataaa 728  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52239100 cttcctttcctttagaccattgttgtatcttcttgtcaatgacctatatcgtgtacagaaatatatgctcaatatcgttattcttctacaagttgataaa 52239199  T
Q  729 aatgaaacatgtgtaggtaagttgcaaattacttggagttcttgaatttcttggttctgtg 789  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52239200 aatgaaacatgtgtaggtaagttgcaaattacttggagttcttgaatttcttggttctgtg 52239260  T

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