View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0748_low_11 (Length: 376)
Name: NF0748_low_11
Description: NF0748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0748_low_11 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 86 - 376
Target Start/End: Complemental strand, 4396938 - 4396649
Alignment:
| Q |
86 |
gtaagcatcattatgattatctaaaagaaactatgcacccaccgtaccattgttgacaagttaaactttttccaacttttgtgagagattgattaaacaa |
185 |
Q |
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| T |
4396938 |
gtaagcatcattatgattatctaaaagaaactatgcacccaccgtaccattgttgacaagttaaactttttccaacttttgtgagagattgattaaacaa |
4396839 |
T |
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| Q |
186 |
ataatctcatgtgatttgaagtttgaacattgattaaaattccaaacgtacagtaggggcggctaaagcacaaaactacnnnnnnnncttcgatttaggt |
285 |
Q |
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| T |
4396838 |
ataatctcatgtgatttgaagtttgaacattgattaaaattccaaacgtacagtaggggcggctaaagcacaaaactacaaaaaaaacttcgttttaggt |
4396739 |
T |
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| Q |
286 |
ttcacatgtttttcatgttaaaattacgatannnnnnnnaggggaaaattacgatatatagttatatttaatattaataaattaatctcat |
376 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4396738 |
ttcacatgtttttcatgttaaaattacgata-ttcttttaggggaaaattacgatatatagttatatttaatattaataaattaatctcat |
4396649 |
T |
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