View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0748_low_12 (Length: 372)
Name: NF0748_low_12
Description: NF0748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0748_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 16 - 344
Target Start/End: Original strand, 34093231 - 34093559
Alignment:
| Q |
16 |
atggaaggataaaacctatgctaaacaaatgtcgtaagaccacctataagttgagagttgaaatgatttatctttaaataaattttaccgtatttctttg |
115 |
Q |
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| T |
34093231 |
atggaaggataaaactgatgctaaacaaatgtcgtaagaccacccataagttgagagttgaaatgatttatctttaaataaattttaccgtatttttttg |
34093330 |
T |
|
| Q |
116 |
atctatatatatctttgggatttagatgtaatcacaataaactcgtcatcacttattagcgacaatattttcagttggtatagagtcattatctaaataa |
215 |
Q |
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| T |
34093331 |
atctatatatatctttgagatttagatgtaatcacaataaactcgtcatcacttattaacgacaatattttcagtcggtatagagtcattatctaaataa |
34093430 |
T |
|
| Q |
216 |
actttatctctacctttcaaaattggacgagtacttctattctatgtcatgaagaatattggcatttgaatttgacgcatgaatgagaactgaattcgca |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34093431 |
actttatctctacctttcaaaattggacgagtacttctattctatgtcatgaataatattggcatttgaatttgacgcatgaatgagaactgaattcgca |
34093530 |
T |
|
| Q |
316 |
tgcatgtttgcagcactcaccattcatgt |
344 |
Q |
| |
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|||||||||||| |||||||||||||||| |
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| T |
34093531 |
tgcatgtttgcaacactcaccattcatgt |
34093559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 237
Target Start/End: Complemental strand, 43405133 - 43405091
Alignment:
| Q |
195 |
atagagtcattatctaaataaactttatctctacctttcaaaa |
237 |
Q |
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||||||||||||||||||| || |||||||||||||| ||||| |
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| T |
43405133 |
atagagtcattatctaaatcaattttatctctaccttccaaaa |
43405091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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