View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0748_low_16 (Length: 355)
Name: NF0748_low_16
Description: NF0748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0748_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 7 - 345
Target Start/End: Complemental strand, 50235177 - 50234839
Alignment:
| Q |
7 |
aaaactgtgcgtacaactggatcaaaacttcctcaacaggtccgcgctcctttacgttctttgcagggctttggtggtcatggagacatcgaaacatgat |
106 |
Q |
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| T |
50235177 |
aaaactgtgcgtacaactagatcaaaactttctcaacaggttcgcgctccatcacgttctttgtagggctttggtggacatggagacatcgaaacatgat |
50235078 |
T |
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| Q |
107 |
gtgccttagccaagaaacttggtctctaactcggcttaacttccacatccagaactctgccaatacaatcaaagcaagttttcaaagcaacggtgtttca |
206 |
Q |
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| T |
50235077 |
gtgccttagccaagaaacttggtctccaactcggcttaacttccacatccaaaattatgccgatacaatcaaagcaagttttcaaagcaacggtgattca |
50234978 |
T |
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| Q |
207 |
acttctgatcgtatggtcaaatggaacagcaataatcatcactgccatatccttaatgtggatgggagttgttcaggaactccaattcgcacaggctttg |
306 |
Q |
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| T |
50234977 |
actcctgatcgtatggtcaaatggaacagcaataatcatcactgccatatccttaatgtggatgggagttgttcatgaactccaattcgtgcaggctttg |
50234878 |
T |
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| Q |
307 |
ggggagttattcgtaacagtgccggtttatacctctctg |
345 |
Q |
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| T |
50234877 |
ggggagttattcgtaacagtgccggcttatacctctctg |
50234839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 136; Significance: 7e-71; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 146 - 337
Target Start/End: Complemental strand, 46954790 - 46954599
Alignment:
| Q |
146 |
cttccacatccagaactctgccaatacaatcaaagcaagttttcaaagcaacggtgtttcaacttctgatcgtatggtcaaatggaacagcaataatcat |
245 |
Q |
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| T |
46954790 |
cttccacatccagaattctgctgatactatcaaagcaagttttcaaagcaacggcgtttcacctactgatcgtatggtcaaatggaacagtaataatcat |
46954691 |
T |
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| Q |
246 |
cactgccatatccttaatgtggatgggagttgttcaggaactccaattcgcacaggctttgggggagttattcgtaacagtgccggtttata |
337 |
Q |
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| T |
46954690 |
cactgccatatccttaacgtggatgggagctgtttaagaactccaattcgcgcaggttttgggggagttattcgtaacagtgccggtttata |
46954599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 218 - 345
Target Start/End: Complemental strand, 46954600 - 46954473
Alignment:
| Q |
218 |
tatggtcaaatggaacagcaataatcatcactgccatatccttaatgtggatgggagttgttcaggaactccaattcgcacaggctttgggggagttatt |
317 |
Q |
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| T |
46954600 |
tatggtcaaatggaacagtaataatcatcactgccatatccttaacgtggatgggagctgtttaagaactccaattcgcgcaggttttgggggagttatt |
46954501 |
T |
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| Q |
318 |
cgtaacagtgccggtttatacctctctg |
345 |
Q |
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| T |
46954500 |
cgtaacagtgccggtttatacctctctg |
46954473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 247 - 345
Target Start/End: Complemental strand, 26702068 - 26701970
Alignment:
| Q |
247 |
actgccatatccttaatgtggatgggagttgttcaggaactccaattcgcacaggctttgggggagttattcgtaacagtgccggtttatacctctctg |
345 |
Q |
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| T |
26702068 |
actgtcatattctaaatgtggatgggagttgttccggtactccaactcgcgcaggttatgggggaattattcgaaacagtgtcggcctttacctctctg |
26701970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 60 - 344
Target Start/End: Original strand, 34361019 - 34361303
Alignment:
| Q |
60 |
acgttctttgcagggctttggtggtcatggagacatcgaaacatgatgtgccttagccaagaaacttggtctctaactcggcttaacttccacatccaga |
159 |
Q |
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|||||||| ||||| || |||||| ||||||| |||| |||||||||||||||||| | || |||||||| || || || |||| ||| |||| |||| |
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| T |
34361019 |
acgttcttagcaggtctatggtggacatggaggcatcacaacatgatgtgccttagcaatgatacttggtcccttacgcgacttagtttctacattcaga |
34361118 |
T |
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| Q |
160 |
actctgccaatacaatcaaagcaagttttcaaagcaacggtgtttcaacttctgatcgtatggtcaaatggaacagcaataatcatcactgccatatcct |
259 |
Q |
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| T |
34361119 |
attctgcggataccataaaatccagctttcaaaacagcagtgccactcctcatgatcgaatggttagatggaatagtaataaccatctctgtcacattct |
34361218 |
T |
|
| Q |
260 |
taatgtggatgggagttgttcaggaactccaattcgcacaggctttgggggagttattcgtaacagtgccggtttatacctctct |
344 |
Q |
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| T |
34361219 |
aaatgtagatggaagttgttccggtattccaactcgcgcaggttatggaggaattattcgaaacagtgccggcctatacctctct |
34361303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 78 - 139
Target Start/End: Original strand, 9792715 - 9792776
Alignment:
| Q |
78 |
tggtggtcatggagacatcgaaacatgatgtgccttagccaagaaacttggtctctaactcg |
139 |
Q |
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|||||| ||||||||||||||||| |||||| |||| | | |||||||||||||||||||| |
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| T |
9792715 |
tggtggacatggagacatcgaaacttgatgtaccttggtaacgaaacttggtctctaactcg |
9792776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 262 - 345
Target Start/End: Original strand, 11052549 - 11052631
Alignment:
| Q |
262 |
atgtggatgggagttgttcaggaactccaattcgcacaggctttgggggagttattcgtaacagtgccggtttatacctctctg |
345 |
Q |
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|||| |||| ||||||||| || ||||||| |||| |||| |||||||| ||||||| || ||||||||||| |||||||||| |
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| T |
11052549 |
atgtagatgagagttgttctggtactccaactcgcgcaggttttggggg-gttattcaaaatagtgccggtttttacctctctg |
11052631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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