View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0748_low_17 (Length: 345)

Name: NF0748_low_17
Description: NF0748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0748_low_17
NF0748_low_17
[»] chr7 (2 HSPs)
chr7 (164-316)||(2667233-2667385)
chr7 (13-168)||(2666835-2666990)


Alignment Details
Target: chr7 (Bit Score: 153; Significance: 5e-81; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 164 - 316
Target Start/End: Original strand, 2667233 - 2667385
Alignment:
Q  164 taggaaaatgaattctttccttaatgaatattggatggaatttgggagccaagcatgattctctttgggtccaggtcctaagcacaaaacacaaatgtgg 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2667233 taggaaaatgaattctttccttaatgaatattggatggaatttgggagccaagcatgattctctttgggtccaggtcctaagcacaaaacacaaatgtgg 2667332  T
Q  264 tcatgatgttattcctagaataaaagaaaggaatgtagcattgcacttgtgat 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2667333 tcatgatgttattcctagaataaaagaaaggaatgtagcattgcacttgtgat 2667385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 13 - 168
Target Start/End: Original strand, 2666835 - 2666990
Alignment:
Q  13 aatatgggttcaccgcatgatcataatatggagggagttcggatcctaacatggattgagccttgacccagtccgaaacatttgattatgttgaaattgg 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2666835 aatatgggttcaccgcatgatcataatatggagggagttcggatcctaacatggattgagccttgacccagtccgaaacatttgattatgttgaaattgg 2666934  T
Q  113 tctctacaatatgttcaacttttgattttaaatcctctaatatgggctacttagga 168  Q
    |||||| |||||||||||||||||||||||||||||||| |||| |||||||||||    
T  2666935 tctctataatatgttcaacttttgattttaaatcctctactatgagctacttagga 2666990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University