View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0748_low_18 (Length: 333)
Name: NF0748_low_18
Description: NF0748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF0748_low_18 |
 |  |
|
Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 80 - 322
Target Start/End: Original strand, 45616686 - 45616929
Alignment:
Q |
80 |
ggtctaaggttatcacgttctaggaagtttttctctacaatgctcttttcaactagaattgtaagaatctacaatgatattgtgaacaaaattatgaaca |
179 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
45616686 |
ggtctaaggttatcacgttctaggaagtttttctctacaatgctctattcaactagaattgtaagaatctacaatgatattgtgaacaaaattatgaaca |
45616785 |
T |
 |
Q |
180 |
tggaaaacagttatccagttattgttctacctactcaatggggtcttcctgttctgtctcacccctcagttgtttgcagaaggagtgtaatggtccctcc |
279 |
Q |
|
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
T |
45616786 |
tggaaaacagttatccagttattgttctacctactcaatggggtcttcctgttctgtctcatccctcagttgtttgcagaaggagtgtaatggtccctcc |
45616885 |
T |
 |
Q |
280 |
aaacag-aaagtgactttctattagtccttttcaattcattcat |
322 |
Q |
|
|
|||||| ||||||||||||||||||||||||||||||||||||| |
|
|
T |
45616886 |
aaacagaaaagtgactttctattagtccttttcaattcattcat |
45616929 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 5193 times since January 2019
Visitors: 4845