View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0748_low_2 (Length: 707)
Name: NF0748_low_2
Description: NF0748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0748_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 614; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 614; E-Value: 0
Query Start/End: Original strand, 42 - 693
Target Start/End: Complemental strand, 52109297 - 52108649
Alignment:
| Q |
42 |
aacctgtggtgacttatgcttaattcattactcttttgaaacctcaaaatttctttaggaacactgttttcttcacacttgaagccaccttcttcatttt |
141 |
Q |
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|||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
52109297 |
aaccggtggtgaattatgcttaattcattactcttttgaaacctcaaaatttctttaggaacactgttttcttcacacttgaagtcaccttcttcatttt |
52109198 |
T |
|
| Q |
142 |
caccacactccatatttctgcactcagtgcttcacttccactgtcaaatcaatgttcacaagaagaaaattcctcaatatactttcatcacgcaatgtta |
241 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52109197 |
catcacactccatatttctgcactcagtgcttcacttccactgtcaaatcaatgttcacaagaagaaaattcctcaatatactttcatcacgcaatgtta |
52109098 |
T |
|
| Q |
242 |
atgtttctaagctaatttctcaccaattaaatccaaatccacttccaaatccccaaacaatttcaaacaattttagggttttactattcaatctctatgg |
341 |
Q |
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| T |
52109097 |
atgtttccaagctaatttctcaccaattaaatccaaatccacttccaaatccccaaa---tttcaaacaattttagggttttactattcaatctctatgg |
52109001 |
T |
|
| Q |
342 |
aacccaagattccaaatttcccgaatacgagatgcctactgttacatggggtgtgattcaaggccgcaaagagaaactcgtttcgcgggtcatcatcttc |
441 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52109000 |
aacccaagattccaaatttccggaatacgagatgcctactgttacatggggtgtgattcaaggccgcaaagagaaactcgtttcgcgggtcatcatcttc |
52108901 |
T |
|
| Q |
442 |
gattatctcaagggtttgggaattattcctgatgaattgcaggatttggagcttccttcaaccgttgaagtcatgagggaacgtgttgagtttattcaga |
541 |
Q |
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| T |
52108900 |
gattatctcaagggtttgggaattattcctgatgaattgcaggatttggagcttccttcaaccgttgaagtcatgagggaacgtgttgagtttattcaga |
52108801 |
T |
|
| Q |
542 |
aattagggttaacgattgatgatataaatcagtatcctttgattttgggttgtagtgttagaaaaaacatgattcctgttttagggtatttagaaaaaat |
641 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52108800 |
aattagggttaacgattgatgatataaatcagtatcctttgattttgggttgtagtgttagaaaaaacatgattcctgttttagggtatttagaaaaaat |
52108701 |
T |
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| Q |
642 |
tgggatttctaggtctaaacttggtgaatttattaagaattatccacaggtt |
693 |
Q |
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| T |
52108700 |
tgggatttctaggtctaaacttggtgaatttattaagaattatccacaggtt |
52108649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 346; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 300 - 693
Target Start/End: Complemental strand, 44520314 - 44519922
Alignment:
| Q |
300 |
aatttcaaacaattttagggttttactattcaatctctatggaacccaagattccaaatttcccgaatacgagatgcctactgttacatggggtgtgatt |
399 |
Q |
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||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
44520314 |
aatttcaaacaattttagggttttattcttcaatctctatggaacccaagattccaaatttcctgaatacgagatgcctactgttacatggggtgtgatt |
44520215 |
T |
|
| Q |
400 |
caaggccgcaaagagaaactcgtttcgcgggtcatcatcttcgattatctcaagggtttgggaattattcctgatgaattgcaggatttggagcttcctt |
499 |
Q |
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| T |
44520214 |
caaggtcgcaaagagaaactcgtttcgagggtcatcatcttcgattatctcaagggtttgggaattattcctgatgaattgcaggatttggagcttcctt |
44520115 |
T |
|
| Q |
500 |
caaccgttgaagtcatgagggaacgtgttgagtttattcagaaattagggttaacgattgatgatataaatcagtatcctttgattttgggttgtagtgt |
599 |
Q |
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| T |
44520114 |
caaccgttgaagtcatgagggaacgtgttgagtttattcagaaattagggttaacgattgatgatataaatcagtatcctttaattttgggttgtagtgt |
44520015 |
T |
|
| Q |
600 |
tagaaaaaacatgattcctgttttagggtatttagaaaaaattgggatttctaggtctaaacttggtgaatttattaagaattatccacaggtt |
693 |
Q |
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|||||||||||||||| | |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44520014 |
gagaaaaaacatgattcgtattttagggtatttataaaaaatt-ggatttctaggtctaaacttggtgaatttattaagaattatccacaggtt |
44519922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 150 - 237
Target Start/End: Complemental strand, 44526294 - 44526207
Alignment:
| Q |
150 |
tccatatttctgcactcagtgcttcacttccactgtcaaatcaatgttcacaagaagaaaattcctcaatatactttcatcacgcaat |
237 |
Q |
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|||||| |||||||| ||||||||||||||| || ||||||||||| ||||||||||||||||||||| |||| | |||||||||||| |
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| T |
44526294 |
tccataattctgcacccagtgcttcacttcctctatcaaatcaatgctcacaagaagaaaattcctcactatattctcatcacgcaat |
44526207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 242 - 293
Target Start/End: Complemental strand, 44520388 - 44520337
Alignment:
| Q |
242 |
atgtttctaagctaatttctcaccaattaaatccaaatccacttccaaatcc |
293 |
Q |
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||||||||||||||||||| ||||||||| |||||||| |||||||| |||| |
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| T |
44520388 |
atgtttctaagctaatttcacaccaattatatccaaatgcacttccacatcc |
44520337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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