View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0748_low_24 (Length: 317)
Name: NF0748_low_24
Description: NF0748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0748_low_24 |
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Alignment Details
Target: chr6 (Bit Score: 141; Significance: 6e-74; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 92 - 248
Target Start/End: Complemental strand, 341457 - 341301
Alignment:
| Q |
92 |
taatcaacgccgttagcatatcaacatgatgagcatcatcactttcagcattgatttcatttttgttacaatttttctttagctcttcgcgctttgaagc |
191 |
Q |
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||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
341457 |
taatcaatgccgttaacatatcaacatgatgagcatcatcactttcagcattgatttcatttttgttacaatttttctttagctcttcgcgctttgaagc |
341358 |
T |
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| Q |
192 |
aatacacgaaaagaggaattgatcaaataccttgcatgcctctgtcattttcatctc |
248 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
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| T |
341357 |
aatacacgaaaagaggaattgatcaaataccttgcatgcctcagtcattttcttctc |
341301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 92 - 242
Target Start/End: Complemental strand, 333165 - 333015
Alignment:
| Q |
92 |
taatcaacgccgttagcatatcaacatgatgagcatcatcactttcagcattgatttcatttttgttacaatttttctttagctcttcgcgctttgaagc |
191 |
Q |
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||||||||| ||| |||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
333165 |
taatcaacgtcgtaagcaaatcaacatgatgagcatcgtcactttcaacattgatttcatttttgttacaattttgctttagctcttcgcgctttgaagc |
333066 |
T |
|
| Q |
192 |
aatacacgaaaagaggaattgatcaaataccttgcatgcctctgtcatttt |
242 |
Q |
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||||||||||| ||||||| ||||||||| ||||||||||| |||||||| |
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| T |
333065 |
tatacacgaaaataggaatttatcaaatactttgcatgcctcggtcatttt |
333015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 100 - 242
Target Start/End: Complemental strand, 337411 - 337269
Alignment:
| Q |
100 |
gccgttagcatatcaacatgatgagcatcatcactttcagcattgatttcatttttgttacaatttttctttagctcttcgcgctttgaagcaatacacg |
199 |
Q |
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|||||||||| |||||||||||||||||||| ||||| | |||| |||||||||||||||| ||||||||||||||||||| |||||||| ||||||| |
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| T |
337411 |
gccgttagcaaatcaacatgatgagcatcattactttgaccattaatttcatttttgttaccgtttttctttagctcttcgcattttgaagctatacacg |
337312 |
T |
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| Q |
200 |
aaaagaggaattgatcaaataccttgcatgcctctgtcatttt |
242 |
Q |
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|| | ||||||||||||||||| |||||||| || |||||||| |
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| T |
337311 |
aatataggaattgatcaaatactttgcatgcttcagtcatttt |
337269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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