View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0748_low_25 (Length: 317)
Name: NF0748_low_25
Description: NF0748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0748_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 28289551 - 28289773
Alignment:
| Q |
1 |
ttcaagtgctaaattttgagattgcattgccaaatcttcccctgaataggcctattgcaacctatcatgctcctacaccgactctaagctcggtagaagc |
100 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28289551 |
ttcaagtgctaaattttgagattgctttgccaaatcttcccctgaataggcctattgcaacctatcatgctcctacaccgactctaagctcggtagaagc |
28289650 |
T |
|
| Q |
101 |
ttccataaccacaagtcttcaacatggtcgttaaataatagtgataaatatggtgtttgtgtcccttcttgttttacatatgtatatccattttttgtgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
28289651 |
ttccataaccacaagtcttcaacatggtcgttaaataataatgataaatctggtgtttgtgtccgttcttgttttacatatgtatatccattttttgtgt |
28289750 |
T |
|
| Q |
201 |
atgaatgtttgaagttggaaatt |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
28289751 |
atgaatgtttgaagttggaaatt |
28289773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 28264185 - 28264071
Alignment:
| Q |
1 |
ttcaagtgctaaattttgagattgcattgccaaatcttcccctgaataggcctattgcaacctatcatgctcctacaccgactctaagctcggtagaagc |
100 |
Q |
| |
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|||||||||| ||||||||| ||||||||||||||||||| | || | |||| ||||||| |||| ||||||| || || || ||||||| | |||||| |
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| T |
28264185 |
ttcaagtgcttaattttgaggttgcattgccaaatcttccaccaaagaagcctgttgcaacttatcttgctcctgcaacgcctataagctcagaagaagc |
28264086 |
T |
|
| Q |
101 |
ttccataaccacaag |
115 |
Q |
| |
|
||||||||||||||| |
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| T |
28264085 |
ttccataaccacaag |
28264071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 28294000 - 28293867
Alignment:
| Q |
1 |
ttcaagtgctaaattttgagattgcattgccaaatcttcccctgaataggcctattgcaacctatcatgctcctacaccgactctaagctcggtagaagc |
100 |
Q |
| |
|
|||||||||| ||||||||| |||| |||||||||||||| | || ||||| ||||||||||||||| |||| || | | ||||||| |||||||| |
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| T |
28294000 |
ttcaagtgcttaattttgaggttgccttgccaaatcttccaccaaagaggccagttgcaacctatcatgttccttcatcatcggtaagctctgtagaagc |
28293901 |
T |
|
| Q |
101 |
ttccataaccacaagtcttcaacatggtcgttaa |
134 |
Q |
| |
|
||||||||||| || |||||| ||||||||||| |
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| T |
28293900 |
ttccataaccaatagccttcaagatggtcgttaa |
28293867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 28304202 - 28304069
Alignment:
| Q |
1 |
ttcaagtgctaaattttgagattgcattgccaaatcttcccctgaataggcctattgcaacctatcatgctcctacaccgactctaagctcggtagaagc |
100 |
Q |
| |
|
|||||||||| ||||||||| || | ||||||||||||| | || ||||| ||||||||||||||||||| ||||| || ||||||| |||||||| |
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| T |
28304202 |
ttcaagtgcttaattttgaggtttccatgccaaatcttccgccaaagaggccagttgcaacctatcatgctcccacaccatctgtaagctccgtagaagc |
28304103 |
T |
|
| Q |
101 |
ttccataaccacaagtcttcaacatggtcgttaa |
134 |
Q |
| |
|
||||||||||| || |||||| | ||||||||| |
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|
| T |
28304102 |
ttccataaccaatagccttcaagacggtcgttaa |
28304069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 134
Target Start/End: Original strand, 28279740 - 28279819
Alignment:
| Q |
55 |
ttgcaacctatcatgctcctacaccgactc-taagctcggtagaagcttccataaccacaagtcttcaacatggtcgttaa |
134 |
Q |
| |
|
|||||||||||||||||||| |||| |||| | ||||| ||| || |||||||||| ||||| |||||| | ||||||||| |
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| T |
28279740 |
ttgcaacctatcatgctcctccacc-actcttgagctctgtaaaaacttccataactacaagccttcaagacggtcgttaa |
28279819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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