View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0748_low_28 (Length: 309)
Name: NF0748_low_28
Description: NF0748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0748_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 121; Significance: 5e-62; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 86 - 214
Target Start/End: Complemental strand, 43463801 - 43463673
Alignment:
| Q |
86 |
aagggtgatctaagaatattggaaaatcatcattcacaatatggtaataaaagttaatgttctgtataattaaacaattaatgcggtaagtttagtgatt |
185 |
Q |
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| T |
43463801 |
aagggtgacctaagaagattggaaaatcatcattcacaatatggtaataaaagttaatgttctgtataattaaacaattaatgcggtaagtttagtgatt |
43463702 |
T |
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| Q |
186 |
aaaaatcaagcggtaaatgtgtaattttt |
214 |
Q |
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| T |
43463701 |
aaaaatcaagcggtaaatgtgtaattttt |
43463673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 86 - 205
Target Start/End: Complemental strand, 43455080 - 43454961
Alignment:
| Q |
86 |
aagggtgatctaagaatattggaaaatcatcattcacaatatggtaataaaagttaatgttctgtataattaaacaattaatgcggtaagtttagtgatt |
185 |
Q |
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|||||||| ||||||| ||||||| ||||||||||||||| | |||| |||| || |||||||| |||||||||||||||||||| | ||||||||| |
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| T |
43455080 |
aagggtgacctaagaagattggaacatcatcattcacaatttagtaacaaaaattcatgttctgcataattaaacaattaatgcgacagatttagtgatg |
43454981 |
T |
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| Q |
186 |
aaaaatcaagcggtaaatgt |
205 |
Q |
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| T |
43454980 |
aaaaatcaagcgctaaatgt |
43454961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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