View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0748_low_3 (Length: 693)

Name: NF0748_low_3
Description: NF0748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0748_low_3
NF0748_low_3
[»] chr3 (19 HSPs)
chr3 (57-653)||(47869864-47870479)
chr3 (489-550)||(32180615-32180676)
chr3 (478-550)||(49359492-49359565)
chr3 (464-550)||(7758287-7758374)
chr3 (478-550)||(38392492-38392565)
chr3 (466-550)||(44880890-44880974)
chr3 (478-550)||(7568583-7568656)
chr3 (466-550)||(43485410-43485495)
chr3 (486-550)||(19606778-19606842)
chr3 (487-550)||(42204467-42204528)
chr3 (478-550)||(45879351-45879424)
chr3 (466-549)||(40640496-40640583)
chr3 (495-550)||(47930531-47930586)
chr3 (493-550)||(26000659-26000716)
chr3 (466-524)||(53811866-53811925)
chr3 (478-550)||(4556656-4556729)
chr3 (414-462)||(43485331-43485380)
chr3 (502-550)||(48155077-48155125)
chr3 (486-550)||(51878234-51878298)
[»] chr6 (8 HSPs)
chr6 (466-550)||(11084018-11084103)
chr6 (486-550)||(26301789-26301853)
chr6 (466-549)||(19631848-19631932)
chr6 (466-550)||(34993930-34994015)
chr6 (486-549)||(30341144-30341207)
chr6 (406-461)||(3005369-3005425)
chr6 (488-524)||(4103033-4103069)
chr6 (502-550)||(25441098-25441146)
[»] chr5 (17 HSPs)
chr5 (478-549)||(10053334-10053406)
chr5 (466-550)||(12081131-12081216)
chr5 (466-550)||(22616592-22616677)
chr5 (466-550)||(33163614-33163699)
chr5 (471-550)||(21266123-21266203)
chr5 (467-550)||(36055738-36055822)
chr5 (464-550)||(25653681-25653768)
chr5 (466-550)||(31878482-31878567)
chr5 (466-550)||(41417443-41417528)
chr5 (496-550)||(13380629-13380683)
chr5 (488-550)||(21320873-21320935)
chr5 (479-550)||(13887353-13887425)
chr5 (466-550)||(27579127-27579212)
chr5 (478-550)||(33752912-33752985)
chr5 (466-545)||(10237513-10237593)
chr5 (514-550)||(25521707-25521743)
chr5 (502-550)||(26411433-26411481)
[»] chr8 (8 HSPs)
chr8 (466-550)||(4108778-4108863)
chr8 (486-550)||(3038526-3038590)
chr8 (488-550)||(6267369-6267431)
chr8 (466-550)||(35735845-35735929)
chr8 (486-547)||(7290839-7290900)
chr8 (488-544)||(18756537-18756593)
chr8 (514-550)||(23176650-23176686)
chr8 (502-550)||(1879090-1879138)
[»] chr2 (16 HSPs)
chr2 (466-550)||(15650947-15651032)
chr2 (466-550)||(34441787-34441872)
chr2 (466-550)||(41643971-41644056)
chr2 (486-550)||(27138885-27138949)
chr2 (466-550)||(19073457-19073542)
chr2 (466-550)||(42005486-42005571)
chr2 (496-548)||(38250000-38250052)
chr2 (478-550)||(30844958-30845031)
chr2 (466-545)||(6177874-6177954)
chr2 (466-550)||(41713261-41713346)
chr2 (486-549)||(18059227-18059290)
chr2 (488-550)||(18779263-18779325)
chr2 (487-550)||(7553475-7553538)
chr2 (406-461)||(30844860-30844916)
chr2 (502-550)||(32651973-32652021)
chr2 (470-549)||(40913164-40913244)
[»] chr4 (14 HSPs)
chr4 (491-550)||(2707998-2708057)
chr4 (466-550)||(1012395-1012481)
chr4 (478-550)||(33036066-33036139)
chr4 (478-549)||(54995664-54995736)
chr4 (467-550)||(2266720-2266804)
chr4 (488-550)||(2570600-2570662)
chr4 (478-550)||(17612445-17612518)
chr4 (488-550)||(17513010-17513072)
chr4 (466-550)||(9743687-9743772)
chr4 (406-468)||(20097460-20097523)
chr4 (406-456)||(28293218-28293269)
chr4 (493-550)||(47236989-47237046)
chr4 (466-510)||(51204682-51204727)
chr4 (502-550)||(5915659-5915707)
[»] chr1 (10 HSPs)
chr1 (487-550)||(27118451-27118514)
chr1 (469-550)||(16132577-16132659)
chr1 (466-550)||(13876783-13876868)
chr1 (493-550)||(10758164-10758221)
chr1 (491-550)||(17695871-17695930)
chr1 (466-550)||(31804948-31805033)
chr1 (499-550)||(421526-421577)
chr1 (478-550)||(15964211-15964284)
chr1 (487-543)||(16127641-16127695)
chr1 (502-550)||(21263909-21263957)
[»] chr7 (11 HSPs)
chr7 (489-550)||(19786407-19786468)
chr7 (466-550)||(7743018-7743103)
chr7 (466-550)||(22955176-22955261)
chr7 (488-550)||(8133423-8133485)
chr7 (466-550)||(37854160-37854243)
chr7 (466-550)||(5781615-5781700)
chr7 (495-550)||(49002353-49002408)
chr7 (466-545)||(23402240-23402320)
chr7 (466-550)||(4618619-4618704)
chr7 (494-550)||(40382016-40382073)
chr7 (514-550)||(4902468-4902504)
[»] scaffold0050 (1 HSPs)
scaffold0050 (466-550)||(5689-5774)
[»] scaffold0262 (1 HSPs)
scaffold0262 (486-549)||(12031-12094)
[»] scaffold0200 (1 HSPs)
scaffold0200 (466-545)||(24686-24766)
[»] scaffold0312 (1 HSPs)
scaffold0312 (499-550)||(8995-9046)


Alignment Details
Target: chr3 (Bit Score: 322; Significance: 0; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 57 - 653
Target Start/End: Original strand, 47869864 - 47870479
Alignment:
Q  57 aaaattaagacactactatacacttccccttaagtcattatcatgaagacggctaatactaacatgaataacatctagctttacaagtgtgagatcaaga 156  Q
    |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  47869864 aaaattaagacactgctatacacttccctttaagtcattatcatgaagacggctaatactaacaagaataacatctagctttacaagtgtgagatcaaga 47869963  T
Q  157 tcatgatctcttagtgccatacctcaatataagagttcatgaagctaaatagtgtgtaggtgtgttaaaa-ttaataaatattgaatcatataattaaag 255  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||    
T  47869964 tcatgatctcttagagccatacctcaatataagagttcatgaagctaaatagtgtgtaagtgtgttaaaactgaataaatattgaatcatataattaaag 47870063  T
Q  256 t----------gttttgaatcatttatgtagaagtatgaaatagagatcttgagtgatgaaatttgaactccttcggtttttnnnnnnnnnnnnnnnttg 345  Q
    |           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||               |||    
T  47870064 ttgaatatgaaattttgaatcatttatgcagaagtatgaaatagagatcttgagtgatgaaatttgaactcgttcggtttttaaaaaaatcaaaaaattg 47870163  T
Q  346 aactcaatcactatttgataaaggagttttgtttgttcttattagaaaaaggaaaatcct------aagtcatgagaatgactttttcggtgaa-ttaat 438  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||      |||| |||||||||||||||||| |||| |||||    
T  47870164 aactcaatcactatttgataaaggggttttgtttgttcttattagaaaaaggaaaattctatactgaagttatgagaatgactttttcgatgaagttaat 47870263  T
Q  439 cctatgatcaatcattgaacatttgtgtatggtgcattacacatttgccataaggtgtgtcattatatctttacgtattgcaattgagtccctgattaaa 538  Q
    | ||||| ||| ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  47870264 cttatgaccaaccattgaatatttgtgtatggtgcattgcacatttgccataaggtgtgtcattatatctttacgtattgcaattgagtccttgattaaa 47870363  T
Q  539 tcaaaattaaac-nnnnnnnnnnnnnnnnnnnnngtaaataaaaaatcgtttgcatcaaaaccgggtaaaacgttccaacttcctttatccctatcatct 637  Q
    ||||||| ||||                      |||||||||||||| |||||||||||| | |||||||| |||||||||||||||||||||||||||    
T  47870364 tcaaaatcaaacattttttttattattttattctgtaaataaaaaatcatttgcatcaaaatctggtaaaacattccaacttcctttatccctatcatct 47870463  T
Q  638 tcatcatattgatatt 653  Q
    |||||| || ||||||    
T  47870464 tcatcagatcgatatt 47870479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 489 - 550
Target Start/End: Complemental strand, 32180676 - 32180615
Alignment:
Q  489 taaggtgtgtcattatatctttacgtattgcaattgagtccctgattaaatcaaaattaaac 550  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  32180676 taaggtgtgtcattatatctttacttattgcaattgtgtccctgattaaatcaaaattaaac 32180615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 478 - 550
Target Start/End: Complemental strand, 49359565 - 49359492
Alignment:
Q  478 cacatttgc-cataaggtgtgtcattatatctttacgtattgcaattgagtccctgattaaatcaaaattaaac 550  Q
    ||||||||| |||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||    
T  49359565 cacatttgctcataaggtgtgtcattatatctttacttaatgcaattgtgtccctgattaaatcaaaattaaac 49359492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 464 - 550
Target Start/End: Complemental strand, 7758374 - 7758287
Alignment:
Q  464 tgtatggtgcattacacatttgcc-ataaggtgtgtcattatatctttacgtattgcaattgagtccctgattaaatcaaaattaaac 550  Q
    ||||||||| |||  ||||||||| |||||||| |||||||||||||||| ||||||||||| |||||| ||||||||||||||||||    
T  7758374 tgtatggtgtattgtacatttgcccataaggtgcgtcattatatctttacttattgcaattgtgtccctaattaaatcaaaattaaac 7758287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 478 - 550
Target Start/End: Complemental strand, 38392565 - 38392492
Alignment:
Q  478 cacatttgcc-ataaggtgtgtcattatatctttacgtattgcaattgagtccctgattaaatcaaaattaaac 550  Q
    |||||||||| |||| |||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||    
T  38392565 cacatttgcccataatgtgtgtcattatatatttacttattgcaattgtgtccctgattaaatcaaaattaaac 38392492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 466 - 550
Target Start/End: Original strand, 44880890 - 44880974
Alignment:
Q  466 tatggtgcattacacatttgc-cataaggtgtgtcattatatctttacgtattgcaattgagtccctgattaaatcaaaattaaac 550  Q
    ||||||| ||| ||||||||| ||||||| |||||||||||||||||| |||| |||||| |||||||||||||||||||||||||    
T  44880890 tatggtgtattgcacatttgctcataagg-gtgtcattatatctttacttattacaattgtgtccctgattaaatcaaaattaaac 44880974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 478 - 550
Target Start/End: Complemental strand, 7568656 - 7568583
Alignment:
Q  478 cacatttgc-cataaggtgtgtcattatatctttacgtattgcaattgagtccctgattaaatcaaaattaaac 550  Q
    ||||||||| ||||| |||||||||||||||||||| |||| |||||| ||| |||||||||||||||||||||    
T  7568656 cacatttgcacataaagtgtgtcattatatctttacttattacaattgtgtctctgattaaatcaaaattaaac 7568583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 466 - 550
Target Start/End: Original strand, 43485410 - 43485495
Alignment:
Q  466 tatggtgcattacacatttgcca-taaggtgtgtcattatatctttacgtattgcaattgagtccctgattaaatcaaaattaaac 550  Q
    ||||||||||| || |||||||  |||| ||||||||||||| ||||| ||||| |||||||||||||||||||| ||||||||||    
T  43485410 tatggtgcattgcatatttgcccctaagatgtgtcattatatttttacttattgtaattgagtccctgattaaattaaaattaaac 43485495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 486 - 550
Target Start/End: Complemental strand, 19606842 - 19606778
Alignment:
Q  486 ccataaggtgtgtcattatatctttacgtattgcaattgagtccctgattaaatcaaaattaaac 550  Q
    ||||||||||||||||||||||||||| | ||||||| | |||||| ||||||||||||||||||    
T  19606842 ccataaggtgtgtcattatatctttacttgttgcaatcgtgtcccttattaaatcaaaattaaac 19606778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 487 - 550
Target Start/End: Original strand, 42204467 - 42204528
Alignment:
Q  487 cataaggtgtgtcattatatctttacgtattgcaattgagtccctgattaaatcaaaattaaac 550  Q
    ||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||    
T  42204467 cataaggtgtgtcat-atatctttacttattgcaattgagt-cctgattaaatcaaaattaaac 42204528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 478 - 550
Target Start/End: Complemental strand, 45879424 - 45879351
Alignment:
Q  478 cacatttgcc-ataaggtgtgtcattatatctttacgtattgcaattgagtccctgattaaatcaaaattaaac 550  Q
    |||||||||| |||||||||||| |||||||||||| ||||| |||||  | ||||||||||||||||||||||    
T  45879424 cacatttgcccataaggtgtgtcgttatatctttacttattgaaattgttttcctgattaaatcaaaattaaac 45879351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 466 - 549
Target Start/End: Complemental strand, 40640583 - 40640496
Alignment:
Q  466 tatggtgcattacacatttgcc-ataaggtgtgtcattatatctttacgtattgc---aattgagtccctgattaaatcaaaattaaa 549  Q
    ||||||| ||| |||||||||| ||||| ||||||||||||| ||||| ||||||   ||||| |||| |||||||||||||||||||    
T  40640583 tatggtgtattgcacatttgcccataagatgtgtcattatatttttacttattgctgcaattgtgtccttgattaaatcaaaattaaa 40640496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 495 - 550
Target Start/End: Complemental strand, 47930586 - 47930531
Alignment:
Q  495 gtgtcattatatctttacgtattgcaattgagtccctgattaaatcaaaattaaac 550  Q
    ||||||||||  |||||| ||||||||||| |||||| ||||||||||||||||||    
T  47930586 gtgtcattattcctttacttattgcaattgtgtccctcattaaatcaaaattaaac 47930531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 493 - 550
Target Start/End: Original strand, 26000659 - 26000716
Alignment:
Q  493 gtgtgtcattatatctttacgtattgcaattgagtccctgattaaatcaaaattaaac 550  Q
    ||||||||||||  |||||| ||||||||||| |||  ||||||||||||||||||||    
T  26000659 gtgtgtcattatcgctttacttattgcaattgtgtcattgattaaatcaaaattaaac 26000716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 466 - 524
Target Start/End: Complemental strand, 53811925 - 53811866
Alignment:
Q  466 tatggtgcattacacatttgc-cataaggtgtgtcattatatctttacgtattgcaattg 524  Q
    ||||||| ||| ||||||||  |||||||||||||||||||||||||| || ||||||||    
T  53811925 tatggtgtattccacatttgtacataaggtgtgtcattatatctttacttaatgcaattg 53811866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 478 - 550
Target Start/End: Original strand, 4556656 - 4556729
Alignment:
Q  478 cacatttgc-cataaggtgtgtcattatatctttacgtattgcaattgagtccctgattaaatcaaaattaaac 550  Q
    ||||||||| ||||| |||||||||||||||||||| |||| ||||| | |  || ||||||| ||||||||||    
T  4556656 cacatttgctcataatgtgtgtcattatatctttacttattacaattaaatatctcattaaattaaaattaaac 4556729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 462
Target Start/End: Original strand, 43485331 - 43485380
Alignment:
Q  414 agaatgactttttcggtgaa-ttaatcctatgatcaatcattgaacattt 462  Q
    ||||||||||||  |||||| |||||||||||| ||||||||||||||||    
T  43485331 agaatgacttttctggtgaagttaatcctatgaccaatcattgaacattt 43485380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 502 - 550
Target Start/End: Complemental strand, 48155125 - 48155077
Alignment:
Q  502 tatatctttacgtattgcaattgagtccctgattaaatcaaaattaaac 550  Q
    ||||| ||||| | ||||||||| |||| ||||||||||||||||||||    
T  48155125 tatatttttacttgttgcaattgtgtccttgattaaatcaaaattaaac 48155077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 486 - 550
Target Start/End: Original strand, 51878234 - 51878298
Alignment:
Q  486 ccataaggtgtgtcattatatctttacgtattgcaattgagtccctgattaaatcaaaattaaac 550  Q
    |||||| |||||| |||||||  |||| ||||||||||| ||| | |||||||| ||||||||||    
T  51878234 ccataatgtgtgttattatattgttacttattgcaattgtgtctccgattaaataaaaattaaac 51878298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 2e-26; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 466 - 550
Target Start/End: Complemental strand, 11084103 - 11084018
Alignment:
Q  466 tatggtgcattacacatttgcc-ataaggtgtgtcattatatctttacgtattgcaattgagtccctgattaaatcaaaattaaac 550  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||    
T  11084103 tatggtgtattacacatttgcccataaggtgtgtcattatatctttacttattgcaattgtgtctctgattaaatcaaaattaaac 11084018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 486 - 550
Target Start/End: Complemental strand, 26301853 - 26301789
Alignment:
Q  486 ccataaggtgtgtcattatatctttacgtattgcaattgagtccctgattaaatcaaaattaaac 550  Q
    ||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  26301853 ccataagatgtgtcattatatctttacttattgcaattgtgtccctgattaaatcaaaattaaac 26301789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 466 - 549
Target Start/End: Original strand, 19631848 - 19631932
Alignment:
Q  466 tatggtgcattacacatttgcc-ataaggtgtgtcattatatctttacgtattgcaattgagtccctgattaaatcaaaattaaa 549  Q
    ||||||| ||| |||||||||| ||||||||| ||||||||||||||| ||||||||| | ||| ||||||||||||||||||||    
T  19631848 tatggtgtattgcacatttgcctataaggtgtttcattatatctttacttattgcaatcgtgtctctgattaaatcaaaattaaa 19631932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 466 - 550
Target Start/End: Original strand, 34993930 - 34994015
Alignment:
Q  466 tatggtgcattacacatttg-ccataaggtgtgtcattatatctttacgtattgcaattgagtccctgattaaatcaaaattaaac 550  Q
    ||||||| ||| |||||||| |||||| || ||| ||||||||||||| |||| |||||| |||| ||||||||||||||||||||    
T  34993930 tatggtgtattgcacatttgtccataatgtatgttattatatctttacttattacaattgtgtccttgattaaatcaaaattaaac 34994015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 486 - 549
Target Start/End: Original strand, 30341144 - 30341207
Alignment:
Q  486 ccataaggtgtgtcattatatctttacgtattgcaattgagtccctgattaaatcaaaattaaa 549  Q
    ||||||| |||||||||||||||| || ||||||||||| || | |||||||||||||||||||    
T  30341144 ccataagttgtgtcattatatcttcacttattgcaattgtgttcatgattaaatcaaaattaaa 30341207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 406 - 461
Target Start/End: Complemental strand, 3005425 - 3005369
Alignment:
Q  406 aagtcatgagaatgactttttcggtgaa-ttaatcctatgatcaatcattgaacatt 461  Q
    ||||||||||||||||||||| | |||| |||||| |||| ||||| ||||||||||    
T  3005425 aagtcatgagaatgacttttttgatgaagttaatcttatggtcaattattgaacatt 3005369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 488 - 524
Target Start/End: Original strand, 4103033 - 4103069
Alignment:
Q  488 ataaggtgtgtcattatatctttacgtattgcaattg 524  Q
    ||||||||||||||||||| ||||| |||||||||||    
T  4103033 ataaggtgtgtcattatatttttacttattgcaattg 4103069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 502 - 550
Target Start/End: Original strand, 25441098 - 25441146
Alignment:
Q  502 tatatctttacgtattgcaattgagtccctgattaaatcaaaattaaac 550  Q
    ||||| ||||| ||||||||||| |||| ||||||||| ||||||||||    
T  25441098 tatatttttacttattgcaattgtgtccttgattaaattaaaattaaac 25441146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 8e-26; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 478 - 549
Target Start/End: Original strand, 10053334 - 10053406
Alignment:
Q  478 cacatttgc-cataaggtgtgtcattatatctttacgtattgcaattgagtccctgattaaatcaaaattaaa 549  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  10053334 cacatttgctcataaggtgtgtcattatatctttacttattgcaattgagtccctgattaaatcaaaattaaa 10053406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 466 - 550
Target Start/End: Complemental strand, 12081216 - 12081131
Alignment:
Q  466 tatggtgcattacacatttgcc-ataaggtgtgtcattatatctttacgtattgcaattgagtccctgattaaatcaaaattaaac 550  Q
    ||||||| |||||||||||||  |||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  12081216 tatggtgtattacacatttgcttataaggtgtgtccttatatctttacttattgcaattaagtccctgattaaatcaaaattaaac 12081131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 466 - 550
Target Start/End: Original strand, 22616592 - 22616677
Alignment:
Q  466 tatggtgcattacacatttgcc-ataaggtgtgtcattatatctttacgtattgcaattgagtccctgattaaatcaaaattaaac 550  Q
    ||||||| |||  ||||||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  22616592 tatggtgtattggacatttgcccataaggtgtgtcattatatctttacttattgcaattgtgtccctgattaaatcaaaattaaac 22616677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 466 - 550
Target Start/End: Original strand, 33163614 - 33163699
Alignment:
Q  466 tatggtgcattacacatttg-ccataaggtgtgtcattatatctttacgtattgcaattgagtccctgattaaatcaaaattaaac 550  Q
    ||||||| ||| |||||||  |||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  33163614 tatggtgtattgcacatttatccataaggtgtgccattatatctttacttattgcaattgtgtccctgattaaatcaaaattaaac 33163699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 471 - 550
Target Start/End: Original strand, 21266123 - 21266203
Alignment:
Q  471 tgcattacacatttgc-cataaggtgtgtcattatatctttacgtattgcaattgagtccctgattaaatcaaaattaaac 550  Q
    |||||| ||||||||| |||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||| ||||||    
T  21266123 tgcattgcacatttgctcataaggtgtatcattatatctttacttattgcaattgagtctctgattaaatcaaatttaaac 21266203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 467 - 550
Target Start/End: Complemental strand, 36055822 - 36055738
Alignment:
Q  467 atggtgcattacacatttgc-cataaggtgtgtcattatatctttacgtattgcaattgagtccctgattaaatcaaaattaaac 550  Q
    |||||| ||| ||||||||| |||||||||||||||||||||||||| |||| |||||| ||||| |||||||||||||||||||    
T  36055822 atggtgtattgcacatttgctcataaggtgtgtcattatatctttacttattacaattgtgtccccgattaaatcaaaattaaac 36055738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 464 - 550
Target Start/End: Original strand, 25653681 - 25653768
Alignment:
Q  464 tgtatggtgcattacacatttgc-cataaggtgtgtcattatatctttacgtattgcaattgagtccctgattaaatcaaaattaaac 550  Q
    ||||||||| ||| ||||||||| |||||||||||||||||||||||||| |||||||| |   ||||||||||||||||||||||||    
T  25653681 tgtatggtgtattgcacatttgctcataaggtgtgtcattatatctttacttattgcaactatttccctgattaaatcaaaattaaac 25653768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 466 - 550
Target Start/End: Original strand, 31878482 - 31878567
Alignment:
Q  466 tatggtgcattacacatttgcc-ataaggtgtgtcattatatctttacgtattgcaattgagtccctgattaaatcaaaattaaac 550  Q
    ||||||| ||| |||||||| | ||||||||||||||||||||||||| |||  |||||| |||||||||||||||||||||||||    
T  31878482 tatggtgtattgcacatttgtctataaggtgtgtcattatatctttacttatgacaattgtgtccctgattaaatcaaaattaaac 31878567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 466 - 550
Target Start/End: Complemental strand, 41417528 - 41417443
Alignment:
Q  466 tatggtgcattacacatttgc-cataaggtgtgtcattatatctttacgtattgcaattgagtccctgattaaatcaaaattaaac 550  Q
    ||||||| ||| || |||||| |||||||||||||||| ||||||||| ||||||||||| ||||| |||||||||||||||||||    
T  41417528 tatggtgtattgcaaatttgctcataaggtgtgtcattttatctttacttattgcaattgtgtcccagattaaatcaaaattaaac 41417443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 496 - 550
Target Start/End: Original strand, 13380629 - 13380683
Alignment:
Q  496 tgtcattatatctttacgtattgcaattgagtccctgattaaatcaaaattaaac 550  Q
    ||||||||||||||||  |||||||||||  ||||||||||||||||||||||||    
T  13380629 tgtcattatatctttatttattgcaattgtatccctgattaaatcaaaattaaac 13380683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 488 - 550
Target Start/End: Original strand, 21320873 - 21320935
Alignment:
Q  488 ataaggtgtgtcattatatctttacgtattgcaattgagtccctgattaaatcaaaattaaac 550  Q
    ||||| ||| ||||||||||||||| |||| |||||| ||| |||||||||||||||||||||    
T  21320873 ataagatgtatcattatatctttacttattacaattgtgtctctgattaaatcaaaattaaac 21320935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 479 - 550
Target Start/End: Original strand, 13887353 - 13887425
Alignment:
Q  479 acatttgc-cataaggtgtgtcattatatctttacgtattgcaattgagtccctgattaaatcaaaattaaac 550  Q
    |||||||| |||| |||||  |||||||| ||||| ||||||||||| |||| ||||||||||||||||||||    
T  13887353 acatttgctcatatggtgtaccattatatttttacttattgcaattgtgtccttgattaaatcaaaattaaac 13887425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 466 - 550
Target Start/End: Original strand, 27579127 - 27579212
Alignment:
Q  466 tatggtgcattacacatttgcc-ataaggtgtgtcattatatctttacgtattgcaattgagtccctgattaaatcaaaattaaac 550  Q
    ||||||| ||| || ||||||| |||| ||| |||||||||||||||  ||||||||||| ||| || |||||||||||| |||||    
T  27579127 tatggtgtattgcatatttgcctataaagtgcgtcattatatctttatttattgcaattgtgtctctaattaaatcaaaagtaaac 27579212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 478 - 550
Target Start/End: Complemental strand, 33752985 - 33752912
Alignment:
Q  478 cacatttg-ccataaggtgtgtcattatatctttacgtattgcaattgagtccctgattaaatcaaaattaaac 550  Q
    |||||||| ||| ||||||||| ||| ||||||||| |||||| |||| |||||||||||||| ||| ||||||    
T  33752985 cacatttgtccacaaggtgtgttattgtatctttacttattgccattgtgtccctgattaaataaaatttaaac 33752912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 466 - 545
Target Start/End: Original strand, 10237513 - 10237593
Alignment:
Q  466 tatggtgcattacacatttg-ccataaggtgtgtcattatatctttacgtattgcaattgagtccctgattaaatcaaaat 545  Q
    ||||||| ||| | |||||| ||||||||| | ||||||||| ||||| |||| |||||| ||||| ||||||||||||||    
T  10237513 tatggtgtattgcgcatttgtccataaggtatttcattatatatttacttattccaattgtgtcccagattaaatcaaaat 10237593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 514 - 550
Target Start/End: Complemental strand, 25521743 - 25521707
Alignment:
Q  514 tattgcaattgagtccctgattaaatcaaaattaaac 550  Q
    ||||||||||| |||| ||||||||||||||||||||    
T  25521743 tattgcaattgtgtccttgattaaatcaaaattaaac 25521707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 502 - 550
Target Start/End: Original strand, 26411433 - 26411481
Alignment:
Q  502 tatatctttacgtattgcaattgagtccctgattaaatcaaaattaaac 550  Q
    ||||| ||||| |||||||||||  ||||| ||||||||||||||||||    
T  26411433 tatatatttacttattgcaattgtatccctaattaaatcaaaattaaac 26411481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 5e-24; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 466 - 550
Target Start/End: Complemental strand, 4108863 - 4108778
Alignment:
Q  466 tatggtgcattacacatttgcc-ataaggtgtgtcattatatctttacgtattgcaattgagtccctgattaaatcaaaattaaac 550  Q
    ||||||| ||| |||||||||| |||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  4108863 tatggtgtattgcacatttgcccataaggtgtgtcgttatatctttacttattgcaattgtgtccctgattaaatcaaaattaaac 4108778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 486 - 550
Target Start/End: Original strand, 3038526 - 3038590
Alignment:
Q  486 ccataaggtgtgtcattatatctttacgtattgcaattgagtccctgattaaatcaaaattaaac 550  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  3038526 ccataaggtgtgtcattatatctttacttattgcaattgtgtccctgattaaatcaaaattaaac 3038590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 488 - 550
Target Start/End: Complemental strand, 6267431 - 6267369
Alignment:
Q  488 ataaggtgtgtcattatatctttacgtattgcaattgagtccctgattaaatcaaaattaaac 550  Q
    ||||||||||| ||||||||||||| ||||||||||  |||| ||||||||||||||||||||    
T  6267431 ataaggtgtgttattatatctttacttattgcaattatgtccttgattaaatcaaaattaaac 6267369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 466 - 550
Target Start/End: Complemental strand, 35735929 - 35735845
Alignment:
Q  466 tatggtgcattacacatttgc-cataaggtgtgtcattatatctttacgtattgcaattgagtccctgattaaatcaaaattaaac 550  Q
    ||||||| ||| ||||||||| ||||||||||| || ||||||||||| |||| |||||| || ||||||||||| ||||||||||    
T  35735929 tatggtgtattgcacatttgctcataaggtgtgccactatatctttacctattacaattgtgt-cctgattaaataaaaattaaac 35735845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 486 - 547
Target Start/End: Original strand, 7290839 - 7290900
Alignment:
Q  486 ccataaggtgtgtcattatatctttacgtattgcaattgagtccctgattaaatcaaaatta 547  Q
    ||||||| ||| | ||||||||||||| |||||||||||  | |||||||||||||||||||    
T  7290839 ccataagatgtattattatatctttacttattgcaattgtattcctgattaaatcaaaatta 7290900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 488 - 544
Target Start/End: Complemental strand, 18756593 - 18756537
Alignment:
Q  488 ataaggtgtgtcattatatctttacgtattgcaattgagtccctgattaaatcaaaa 544  Q
    ||||| ||||||||||||||||||| ||||||||||| |||| ||||| ||| ||||    
T  18756593 ataagatgtgtcattatatctttacttattgcaattgtgtccatgattcaattaaaa 18756537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 514 - 550
Target Start/End: Complemental strand, 23176686 - 23176650
Alignment:
Q  514 tattgcaattgagtccctgattaaatcaaaattaaac 550  Q
    ||||||||||| |||||||||||||||||||||||||    
T  23176686 tattgcaattgtgtccctgattaaatcaaaattaaac 23176650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 502 - 550
Target Start/End: Complemental strand, 1879138 - 1879090
Alignment:
Q  502 tatatctttacgtattgcaattgagtccctgattaaatcaaaattaaac 550  Q
    ||||| ||||| |||||||| || |||| ||||||||||||||||||||    
T  1879138 tatatttttacttattgcaaatgtgtccttgattaaatcaaaattaaac 1879090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 5e-24; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 466 - 550
Target Start/End: Original strand, 15650947 - 15651032
Alignment:
Q  466 tatggtgcattacacatttgcc-ataaggtgtgtcattatatctttacgtattgcaattgagtccctgattaaatcaaaattaaac 550  Q
    ||||||| ||| |||||||||| ||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||    
T  15650947 tatggtgtatttcacatttgcccataaggtgtgtcattatatctttacttattgcaattgtgttcctgattaaatcaaaattaaac 15651032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 466 - 550
Target Start/End: Complemental strand, 34441872 - 34441787
Alignment:
Q  466 tatggtgcattacacatttgcc-ataaggtgtgtcattatatctttacgtattgcaattgagtccctgattaaatcaaaattaaac 550  Q
    ||||||| ||| |||||||||| ||||| |||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  34441872 tatggtgtattgcacatttgcccataagatgtgtcgttatatctttacttattgcaattgtgtccctgattaaatcaaaattaaac 34441787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 466 - 550
Target Start/End: Original strand, 41643971 - 41644056
Alignment:
Q  466 tatggtgcattacacatttgc-cataaggtgtgtcattatatctttacgtattgcaattgagtccctgattaaatcaaaattaaac 550  Q
    ||||||| ||| ||||||||  |||||||||||||||||||||||||| |||||||||||  ||||||||||||||||||||||||    
T  41643971 tatggtgtattgcacatttgatcataaggtgtgtcattatatctttacttattgcaattgtatccctgattaaatcaaaattaaac 41644056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 486 - 550
Target Start/End: Complemental strand, 27138949 - 27138885
Alignment:
Q  486 ccataaggtgtgtcattatatctttacgtattgcaattgagtccctgattaaatcaaaattaaac 550  Q
    |||||| |||||||||||||||||||||  ||||||||| |||||||||||||||||||||||||    
T  27138949 ccataaagtgtgtcattatatctttacgggttgcaattgtgtccctgattaaatcaaaattaaac 27138885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 466 - 550
Target Start/End: Original strand, 19073457 - 19073542
Alignment:
Q  466 tatggtgcattacacatttgcc-ataaggtgtgtcattatatctttacgtattgcaattgagtccctgattaaatcaaaattaaac 550  Q
    ||||||| ||| |||||||| | ||||||||||||||||||| ||||| ||||| ||||| |||||||||||||||||| ||||||    
T  19073457 tatggtgtattccacatttgtctataaggtgtgtcattatatatttacttattgaaattgtgtccctgattaaatcaaagttaaac 19073542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 466 - 550
Target Start/End: Original strand, 42005486 - 42005571
Alignment:
Q  466 tatggtgcattacacatttgccataaggtgtgtcattatatctttacgtattgcaattgagt-ccctgattaaatcaaaattaaac 550  Q
    ||||||| ||| ||||||  |||||||||||||||||| |||||||| ||||| ||||| || |||||||||||||||||||||||    
T  42005486 tatggtgtattgcacattgcccataaggtgtgtcattacatctttacttattgtaattgtgtcccctgattaaatcaaaattaaac 42005571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 496 - 548
Target Start/End: Complemental strand, 38250052 - 38250000
Alignment:
Q  496 tgtcattatatctttacgtattgcaattgagtccctgattaaatcaaaattaa 548  Q
    ||||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  38250052 tgtcattatatctttacttattgcaattgtgtccctgattaaatcaaaattaa 38250000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 478 - 550
Target Start/End: Original strand, 30844958 - 30845031
Alignment:
Q  478 cacatttg-ccataaggtgtgtcattatatctttacgtattgcaattgagtccctgattaaatcaaaattaaac 550  Q
    |||||||| ||||||| |||||||||| |||||||| ||||||| ||||||| || ||||||||||||||||||    
T  30844958 cacatttgtccataagatgtgtcattaaatctttacttattgcatttgagtctctaattaaatcaaaattaaac 30845031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 466 - 545
Target Start/End: Original strand, 6177874 - 6177954
Alignment:
Q  466 tatggtgcattacacatttgcc-ataaggtgtgtcattatatctttacgtattgcaattgagtccctgattaaatcaaaat 545  Q
    ||||||| ||| | |||||||| ||||||| ||||||||||| ||||| |||| |||||| ||||||||||||||||||||    
T  6177874 tatggtgtattgcgcatttgcccataaggtatgtcattatatatttacttattccaattgtgtccctgattaaatcaaaat 6177954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 466 - 550
Target Start/End: Original strand, 41713261 - 41713346
Alignment:
Q  466 tatggtgcattacacatttgcc-ataaggtgtgtcattatatctttacgtattgcaattgagtccctgattaaatcaaaattaaac 550  Q
    |||||||  ||||||||||||| ||||| ||||||||||||| | ||| |||| ||||||  ||||| ||||||||||||||||||    
T  41713261 tatggtgtgttacacatttgcccataagatgtgtcattatatgtatacttattacaattgtttccctaattaaatcaaaattaaac 41713346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 486 - 549
Target Start/End: Complemental strand, 18059290 - 18059227
Alignment:
Q  486 ccataaggtgtgtcattatatctttacgtattgcaattgagtccctgattaaatcaaaattaaa 549  Q
    |||||| |||||| ||||||||||||| ||||||||||| |||| |||||| || |||||||||    
T  18059290 ccataatgtgtgttattatatctttacttattgcaattgtgtccttgattagattaaaattaaa 18059227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 488 - 550
Target Start/End: Complemental strand, 18779325 - 18779263
Alignment:
Q  488 ataaggtgtgtcattatatctttacgtattgcaattgagtccctgattaaatcaaaattaaac 550  Q
    |||| |||||| ||| ||||||||| ||||||||||| || ||||||||||||||| ||||||    
T  18779325 ataaagtgtgttattttatctttacttattgcaattgtgttcctgattaaatcaaagttaaac 18779263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 487 - 550
Target Start/End: Original strand, 7553475 - 7553538
Alignment:
Q  487 cataaggtgtgtcattatatctttacgtattgcaattgagtccctgattaaatcaaaattaaac 550  Q
    |||| ||||| ||| ||||| ||||| ||||||||||| |||  ||||||||||||||||||||    
T  7553475 catatggtgtatcactatatttttacttattgcaattgtgtcattgattaaatcaaaattaaac 7553538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 406 - 461
Target Start/End: Original strand, 30844860 - 30844916
Alignment:
Q  406 aagtcatgagaatgactttttcggtgaa-ttaatcctatgatcaatcattgaacatt 461  Q
    |||| |||||||||||||||  |||||| ||||||| ||||||||||||||| ||||    
T  30844860 aagttatgagaatgacttttaaggtgaagttaatcccatgatcaatcattgagcatt 30844916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 502 - 550
Target Start/End: Original strand, 32651973 - 32652021
Alignment:
Q  502 tatatctttacgtattgcaattgagtccctgattaaatcaaaattaaac 550  Q
    ||||| ||||| | ||||||||| |||| ||||||||||||||||||||    
T  32651973 tatatttttacttgttgcaattgtgtccttgattaaatcaaaattaaac 32652021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 470 - 549
Target Start/End: Complemental strand, 40913244 - 40913164
Alignment:
Q  470 gtgcattacacatttgc-cataaggtgtgtcattatatctttacgtattgcaattgagtccctgattaaatcaaaattaaa 549  Q
    |||||||  |||||||| |||| |||||  || ||||| ||||  ||||||||||| |||| |||||||||||||||||||    
T  40913244 gtgcattgtacatttgctcatatggtgtaccactatatttttatttattgcaattgtgtccttgattaaatcaaaattaaa 40913164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 8e-23; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 491 - 550
Target Start/End: Original strand, 2707998 - 2708057
Alignment:
Q  491 aggtgtgtcattatatctttacgtattgcaattgagtccctgattaaatcaaaattaaac 550  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  2707998 aggtgtgtcattatatctttacttattgcaattgagtccctgattaaatcaaaattaaac 2708057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 466 - 550
Target Start/End: Original strand, 1012395 - 1012481
Alignment:
Q  466 tatggtgcattacacatttgcc-ataaggtgtgtcattatatctttacgtattgcaa-ttgagtccctgattaaatcaaaattaaac 550  Q
    ||||||| ||| |||||||||| ||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||||||||||    
T  1012395 tatggtgtattgcacatttgcccataaggtgtgtcattatatctttacttattgcaatttgtgtccctgattaaatcaaaattaaac 1012481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 478 - 550
Target Start/End: Complemental strand, 33036139 - 33036066
Alignment:
Q  478 cacatttgcc-ataaggtgtgtcattatatctttacgtattgcaattgagtccctgattaaatcaaaattaaac 550  Q
    |||||||||| ||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  33036139 cacatttgcctataaggtttgtcattatatctttacttattgcaattgagtctctgattaaatcaaaattaaac 33036066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 478 - 549
Target Start/End: Complemental strand, 54995736 - 54995664
Alignment:
Q  478 cacatttg-ccataaggtgtgtcattatatctttacgtattgcaattgagtccctgattaaatcaaaattaaa 549  Q
    |||||||| |||||| ||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  54995736 cacatttgtccataatgtgtgtctttatatctttacttattgcaattgtgtccctgattaaatcaaaattaaa 54995664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 467 - 550
Target Start/End: Complemental strand, 2266804 - 2266720
Alignment:
Q  467 atggtgcattacacatttgcc-ataaggtgtgtcattatatctttacgtattgcaattgagtccctgattaaatcaaaattaaac 550  Q
    |||||| |||||||||||| | ||||||||||||||||||||||||| |||||||| |  | |  ||||||||||||||||||||    
T  2266804 atggtgtattacacatttgtctataaggtgtgtcattatatctttacttattgcaactatgactttgattaaatcaaaattaaac 2266720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 488 - 550
Target Start/End: Original strand, 2570600 - 2570662
Alignment:
Q  488 ataaggtgtgtcattatatctttacgtattgcaattgagtccctgattaaatcaaaattaaac 550  Q
    |||| |||||||||||||||||||  ||||||||||| |||||| |||||||||||| |||||    
T  2570600 ataaagtgtgtcattatatctttatttattgcaattgtgtccctaattaaatcaaaagtaaac 2570662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 478 - 550
Target Start/End: Original strand, 17612445 - 17612518
Alignment:
Q  478 cacatttgcca-taaggtgtgtcattatatctttacgtattgcaattgagtccctgattaaatcaaaattaaac 550  Q
    ||||||||||| ||||||||||||||  |||||||| ||||||||||  ||||  |||||||||||||||||||    
T  17612445 cacatttgccaataaggtgtgtcattgcatctttacttattgcaattatgtcctagattaaatcaaaattaaac 17612518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 488 - 550
Target Start/End: Complemental strand, 17513072 - 17513010
Alignment:
Q  488 ataaggtgtgtcattatatctttacgtattgcaattgagtccctgattaaatcaaaattaaac 550  Q
    |||| |||||||||||||||||||  ||||| |||||||||  | ||||||||||||||||||    
T  17513072 ataatgtgtgtcattatatctttatttattgtaattgagtctataattaaatcaaaattaaac 17513010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 466 - 550
Target Start/End: Original strand, 9743687 - 9743772
Alignment:
Q  466 tatggtgcattacacatttg-ccataaggtgtgtcattatatctttacgtattgcaattgagtccctgattaaatcaaaattaaac 550  Q
    ||||||| ||| |||||||  |||||| |||| |||||| |||||||| ||||||||||  || | ||||||||||||||||||||    
T  9743687 tatggtgtattgcacatttttccataaagtgtttcattaaatctttacttattgcaattatgttcttgattaaatcaaaattaaac 9743772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 406 - 468
Target Start/End: Complemental strand, 20097523 - 20097460
Alignment:
Q  406 aagtcatgagaatgactttttcggtgaa-ttaatcctatgatcaatcattgaacatttgtgtat 468  Q
    ||||||||||||||||||||  |||||| |||| ||||||||||||||||   |||||||||||    
T  20097523 aagtcatgagaatgacttttctggtgaagttaaccctatgatcaatcattccgcatttgtgtat 20097460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 406 - 456
Target Start/End: Complemental strand, 28293269 - 28293218
Alignment:
Q  406 aagtcatgagaatgactttttcggtgaa-ttaatcctatgatcaatcattga 456  Q
    |||||||||||||||||||||||||||| |||| | |||| |||||||||||    
T  28293269 aagtcatgagaatgactttttcggtgaagttaaccatatggtcaatcattga 28293218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 493 - 550
Target Start/End: Original strand, 47236989 - 47237046
Alignment:
Q  493 gtgtgtcattatatctttacgtattgcaattgagtccctgattaaatcaaaattaaac 550  Q
    ||||||||||| || ||||| ||||||||||| |  |||||||||||| |||||||||    
T  47236989 gtgtgtcattagatttttacttattgcaattgcgcacctgattaaatcgaaattaaac 47237046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 466 - 510
Target Start/End: Original strand, 51204682 - 51204727
Alignment:
Q  466 tatggtgcattacacatttgcca-taaggtgtgtcattatatcttt 510  Q
    ||||||||||| ||||||||| | ||||||||||||||||||||||    
T  51204682 tatggtgcattgcacatttgctaataaggtgtgtcattatatcttt 51204727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 502 - 550
Target Start/End: Complemental strand, 5915707 - 5915659
Alignment:
Q  502 tatatctttacgtattgcaattgagtccctgattaaatcaaaattaaac 550  Q
    ||||| ||||| | ||||||||| |||| ||||||||||||||||||||    
T  5915707 tatatttttacttgttgcaattgtgtccttgattaaatcaaaattaaac 5915659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 8e-23; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 487 - 550
Target Start/End: Original strand, 27118451 - 27118514
Alignment:
Q  487 cataaggtgtgtcattatatctttacgtattgcaattgagtccctgattaaatcaaaattaaac 550  Q
    |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  27118451 cataaggtgtgtcattatatctttacttattgcaattgtgtccctgattaaatcaaaattaaac 27118514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 469 - 550
Target Start/End: Original strand, 16132577 - 16132659
Alignment:
Q  469 ggtgcattacacatttgc-cataaggtgtgtcattatatctttacgtattgcaattgagtccctgattaaatcaaaattaaac 550  Q
    |||| ||| ||||||||| ||||| |||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||    
T  16132577 ggtgtattgcacatttgcacataatgtgtgtcattatatctttacttattgcaattgtgtctctgattaaatcaaaattaaac 16132659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 466 - 550
Target Start/End: Complemental strand, 13876868 - 13876783
Alignment:
Q  466 tatggtgcattacacatttgcc-ataaggtgtgtcattatatctttacgtattgcaattgagtccctgattaaatcaaaattaaac 550  Q
    ||||||| |||||||||||||| |||| |||||||||||||| ||||  |||||||||||  ||| ||||||||||||||||||||    
T  13876868 tatggtgtattacacatttgcccataaagtgtgtcattatatttttagttattgcaattgtatccttgattaaatcaaaattaaac 13876783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 493 - 550
Target Start/End: Complemental strand, 10758221 - 10758164
Alignment:
Q  493 gtgtgtcattatatctttacgtattgcaattgagtccctgattaaatcaaaattaaac 550  Q
    |||||||||||||| ||||| ||||||||||| |||||| ||||||||||||||||||    
T  10758221 gtgtgtcattatatttttacttattgcaattgtgtccctaattaaatcaaaattaaac 10758164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 491 - 550
Target Start/End: Complemental strand, 17695930 - 17695871
Alignment:
Q  491 aggtgtgtcattatatctttacgtattgcaattgagtccctgattaaatcaaaattaaac 550  Q
    ||||||||||||||| |||||| ||||| |||||||||  ||||||||||||||||||||    
T  17695930 aggtgtgtcattataactttacttattgtaattgagtctttgattaaatcaaaattaaac 17695871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 466 - 550
Target Start/End: Complemental strand, 31805033 - 31804948
Alignment:
Q  466 tatggtgcattacacatttgcc-ataaggtgtgtcattatatctttacgtattgcaattgagtccctgattaaatcaaaattaaac 550  Q
    ||||||| ||| |||||||||| ||||  | ||||||||||||||||| | ||| ||||| ||| |||||||||||||||||||||    
T  31805033 tatggtgtattgcacatttgccgataacatatgtcattatatctttacttcttgaaattgtgtcactgattaaatcaaaattaaac 31804948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 499 - 550
Target Start/End: Original strand, 421526 - 421577
Alignment:
Q  499 cattatatctttacgtattgcaattgagtccctgattaaatcaaaattaaac 550  Q
    ||||||||||||||  |||||||||| |||| ||||||||||||||||||||    
T  421526 cattatatctttactaattgcaattgtgtccttgattaaatcaaaattaaac 421577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 478 - 550
Target Start/End: Original strand, 15964211 - 15964284
Alignment:
Q  478 cacatttg-ccataaggtgtgtcattatatctttacgtattgcaattgagtccctgattaaatcaaaattaaac 550  Q
    |||||||| ||||||| |||||||||||||  ||||  ||  |||||| |||||||||||||||||||||||||    
T  15964211 cacatttgtccataagatgtgtcattatatacttactgatatcaattgtgtccctgattaaatcaaaattaaac 15964284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 487 - 543
Target Start/End: Original strand, 16127641 - 16127695
Alignment:
Q  487 cataaggtgtgtcattatatctttacgtattgcaattgagtccctgattaaatcaaa 543  Q
    |||||||||||||||||||| ||||| ||||||||||  |||||||| |||||||||    
T  16127641 cataaggtgtgtcattatatgtttacttattgcaatt--gtccctgaataaatcaaa 16127695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 502 - 550
Target Start/End: Complemental strand, 21263957 - 21263909
Alignment:
Q  502 tatatctttacgtattgcaattgagtccctgattaaatcaaaattaaac 550  Q
    ||||| ||||| ||||||||||| |||| ||||||||||||||||||||    
T  21263957 tatatttttacttattgcaattgtgtccttgattaaatcaaaattaaac 21263909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 1e-21; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 489 - 550
Target Start/End: Original strand, 19786407 - 19786468
Alignment:
Q  489 taaggtgtgtcattatatctttacgtattgcaattgagtccctgattaaatcaaaattaaac 550  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  19786407 taaggtgtgtcattatatctttacttattgcaattgagtccttgattaaatcaaaattaaac 19786468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 466 - 550
Target Start/End: Original strand, 7743018 - 7743103
Alignment:
Q  466 tatggtgcattacacatttg-ccataaggtgtgtcattatatctttacgtattgcaattgagtccctgattaaatcaaaattaaac 550  Q
    ||||||| |||  ||||||| |||||||| |||||||||||||||||| ||||||||||| | |||||||||||| ||||||||||    
T  7743018 tatggtgtattgtacatttgtccataaggcgtgtcattatatctttacttattgcaattgtgcccctgattaaattaaaattaaac 7743103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 466 - 550
Target Start/End: Complemental strand, 22955261 - 22955176
Alignment:
Q  466 tatggtgcattacacatttgc-cataaggtgtgtcattatatctttacgtattgcaattgagtccctgattaaatcaaaattaaac 550  Q
    ||||||| ||| ||||||||| |||||||| ||||||| ||||||||| ||||||||||| |||||| |||||||||| |||||||    
T  22955261 tatggtgtattgcacatttgctcataaggtatgtcattgtatctttacttattgcaattgtgtcccttattaaatcaacattaaac 22955176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 488 - 550
Target Start/End: Complemental strand, 8133485 - 8133423
Alignment:
Q  488 ataaggtgtgtcattatatctttacgtattgcaattgagtccctgattaaatcaaaattaaac 550  Q
    ||||||| |||||||||||| |||| ||||||||||| |||||| ||||||||||||||||||    
T  8133485 ataaggtctgtcattatatcattacttattgcaattgcgtccctaattaaatcaaaattaaac 8133423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 466 - 550
Target Start/End: Complemental strand, 37854243 - 37854160
Alignment:
Q  466 tatggtgcattacacatttgc-cataaggtgtgtcattatatctttacgtattgcaattgagtccctgattaaatcaaaattaaac 550  Q
    ||||||| ||| ||||||||| |||||||| |||  ||||||||||||  |||||||||| |||||||||||||||||||||||||    
T  37854243 tatggtgtattgcacatttgctcataaggtatgt--ttatatctttactgattgcaattgtgtccctgattaaatcaaaattaaac 37854160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 466 - 550
Target Start/End: Original strand, 5781615 - 5781700
Alignment:
Q  466 tatggtgcattacacatttg-ccataaggtgtgtcattatatctttacgtattgcaattgagtccctgattaaatcaaaattaaac 550  Q
    ||||||| ||| || ||||| ||||||  ||||||||||||||||||  ||||||||||| |||| ||||||||||||||||||||    
T  5781615 tatggtgtattgcatatttgaccataaaatgtgtcattatatctttatttattgcaattgtgtccttgattaaatcaaaattaaac 5781700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 495 - 550
Target Start/End: Original strand, 49002353 - 49002408
Alignment:
Q  495 gtgtcattatatctttacgtattgcaattgagtccctgattaaatcaaaattaaac 550  Q
    |||||||||||||||||| ||||||||||| ||  |||||||||||||||||||||    
T  49002353 gtgtcattatatctttacttattgcaattgtgtgtctgattaaatcaaaattaaac 49002408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 466 - 545
Target Start/End: Complemental strand, 23402320 - 23402240
Alignment:
Q  466 tatggtgcattacacatttg-ccataaggtgtgtcattatatctttacgtattgcaattgagtccctgattaaatcaaaat 545  Q
    ||||||| ||| | |||||| ||||||| | ||||||||||| ||||| |||| |||||| ||||||||||||||||||||    
T  23402320 tatggtgtattgcgcatttgtccataagatatgtcattatatatttacttatttcaattgtgtccctgattaaatcaaaat 23402240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 466 - 550
Target Start/End: Complemental strand, 4618704 - 4618619
Alignment:
Q  466 tatggtgcattacacatttgc-cataaggtgtgtcattatatctttacgtattgcaattgagtccctgattaaatcaaaattaaac 550  Q
    ||||||| ||| ||||||||  |||||  ||||||||||||| ||||  |||||||||||  | ||| ||||||||||||||||||    
T  4618704 tatggtgtattgcacatttgttcataaaatgtgtcattatatatttatttattgcaattgtatacctcattaaatcaaaattaaac 4618619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 494 - 550
Target Start/End: Original strand, 40382016 - 40382073
Alignment:
Q  494 tgtgtcattatatctttacgtattgcaa-ttgagtccctgattaaatcaaaattaaac 550  Q
    ||||||||||||||||||| |||| ||| ||| |||||| ||||||| ||||||||||    
T  40382016 tgtgtcattatatctttacttattacaatttgtgtccctaattaaataaaaattaaac 40382073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 514 - 550
Target Start/End: Original strand, 4902468 - 4902504
Alignment:
Q  514 tattgcaattgagtccctgattaaatcaaaattaaac 550  Q
    ||||||||| | |||||||||||||||||||||||||    
T  4902468 tattgcaatagtgtccctgattaaatcaaaattaaac 4902504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 466 - 550
Target Start/End: Original strand, 5689 - 5774
Alignment:
Q  466 tatggtgcattacacatttgcc-ataaggtgtgtcattatatctttacgtattgcaattgagtccctgattaaatcaaaattaaac 550  Q
    ||||||| ||| |||||||||| ||||||||||||||||||| ||| | ||||||||||  |||||| ||||||||||||||||||    
T  5689 tatggtgtattgcacatttgcctataaggtgtgtcattatatatttccttattgcaattatgtccctcattaaatcaaaattaaac 5774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 486 - 549
Target Start/End: Complemental strand, 12094 - 12031
Alignment:
Q  486 ccataaggtgtgtcattatatctttacgtattgcaattgagtccctgattaaatcaaaattaaa 549  Q
    ||||||| ||||||||||||| ||||| ||||||||||| || |||||||||||||||||||||    
T  12094 ccataagatgtgtcattatatatttacttattgcaattgtgttcctgattaaatcaaaattaaa 12031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 466 - 545
Target Start/End: Complemental strand, 24766 - 24686
Alignment:
Q  466 tatggtgcattacacatttgcc-ataaggtgtgtcattatatctttacgtattgcaattgagtccctgattaaatcaaaat 545  Q
    ||||||| ||| | |||||||| ||||||| ||| ||||||| ||||| |||| |||||| ||||||||||||||||||||    
T  24766 tatggtgtattgcgcatttgcccataaggtatgttattatatatttacttattccaattgtgtccctgattaaatcaaaat 24686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0312 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 499 - 550
Target Start/End: Complemental strand, 9046 - 8995
Alignment:
Q  499 cattatatctttacgtattgcaattgagtccctgattaaatcaaaattaaac 550  Q
    ||||||||||||||  |||||||||| |||| ||||||||||||||||||||    
T  9046 cattatatctttactaattgcaattgtgtccttgattaaatcaaaattaaac 8995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 3134 times since January 2019
Visitors: 4805