View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0748_low_31 (Length: 295)
Name: NF0748_low_31
Description: NF0748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0748_low_31 |
 | |
|
| [»] scaffold0312 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-157; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 960419 - 960140
Alignment:
| Q |
1 |
aacagcttcaacattgtttccgagtttcgaaatagtgaaatcaaccatagattccaatgaagttacacaaagcttttcctcacctttgatgccatttgct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
960419 |
aacagcttcaacattgtttccgagtttcgaaatagtgaaatcaaccatagattccaatgaagttacacaaagcttttcctcacctttgatgccatttgct |
960320 |
T |
|
| Q |
101 |
tcacactcacttattgttctcttcacaatttcagcttcctttgatccttccttgatggaaaacttgttgagtatgttttccattttgtttgatgaaaagg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
960319 |
tcacactcacttattgttctcttcacaatttcagcttcctttgatccttccttgatggaaaacttgttgagtatgttttccattttgtttgatgaaaagg |
960220 |
T |
|
| Q |
201 |
gtatggaattagcaacttctctaggcaagaattttgttccattattatttgaagttgtctctttgaattgcaagttcaat |
280 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
960219 |
gtatggaattagcaacttctctaggcaagaattttgttccattattatttgaagttgtctctttgaattgcaagttcaat |
960140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 4 - 280
Target Start/End: Complemental strand, 949444 - 949168
Alignment:
| Q |
4 |
agcttcaacattgtttccgagtttcgaaatagtgaaatcaaccatagattccaatgaagttacacaaagcttttcctcacctttgatgccatttgcttca |
103 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
949444 |
agcttcaacattgtttccgagttttgaaatagtgaaatcaaccatagattccaatgaagttacacaaagcttttcctcacctttgatgccatttgcttca |
949345 |
T |
|
| Q |
104 |
cactcacttattgttctcttcacaatttcagcttcctttgatccttccttgatggaaaacttgttgagtatgttttccattttgtttgatgaaaagggta |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
949344 |
cactcacttattgttctcttcacaatttcagcttcctttgatccttccttgatggaaaacttgttgagtatgttttccaatttgtttgatgaaaagggta |
949245 |
T |
|
| Q |
204 |
tggaattagcaacttctctaggcaagaattttgttccattattatttgaagttgtctctttgaattgcaagttcaat |
280 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
949244 |
tggaattagcaacttctctaggcaagaattttgttccattattatttgaagttgtctcttggaattgcaagttcaat |
949168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 942458 - 942208
Alignment:
| Q |
1 |
aacagcttcaacattgtttccgagtttcgaaatagtgaaatcaaccatagattccaatgaagttacacaaagcttttcctcacctttgatgccatttgct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
942458 |
aacagcttcaacattgtttccgagtttcgaaatggtgaaatcaaccatagattccaatgaagttatacaaagcttttcctcacctttgatgccatttgct |
942359 |
T |
|
| Q |
101 |
tcacactcacttattgttctcttcacaatttcagcttcctttgatccttccttgatggaaaacttgttgagtatgttttccattttgtttgatgaaaagg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
942358 |
tcacactcacttattgttctcttcacaatttcagcttcctttgatccttccttgatggaaaacttgttgagtatgttttccattttgtttgatgaaaagg |
942259 |
T |
|
| Q |
201 |
gtatggaattagcaacttctctaggcaagaattttgttccattattatttg |
251 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| |||| ||||||||| |
|
|
| T |
942258 |
gtatggaattagcaacttctttaggcaagaattttgctccactattatttg |
942208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 971728 - 971478
Alignment:
| Q |
1 |
aacagcttcaacattgtttccgagtttcgaaatagtgaaatcaaccatagattccaatgaagttacacaaagcttttcctcacctttgatgccatttgct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
971728 |
aacagcttcaacattgtttccgagtttcgaaatggtgaaatcaaccatagattccaatgaagttatacaaagcttttcctcacctttgatgccatttgct |
971629 |
T |
|
| Q |
101 |
tcacactcacttattgttctcttcacaatttcagcttcctttgatccttccttgatggaaaacttgttgagtatgttttccattttgtttgatgaaaagg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
971628 |
tcacactcacttattgttctcttcacaatttcagcttcctttgatccttccttgatggaaaacttgttgagtatgttttccattttgtttgatgaaaagg |
971529 |
T |
|
| Q |
201 |
gtatggaattagcaacttctctaggcaagaattttgttccattattatttg |
251 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| |||| ||||||||| |
|
|
| T |
971528 |
gtatggaattagcaacttctttaggcaagaattttgctccactattatttg |
971478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 936538 - 936263
Alignment:
| Q |
1 |
aacagcttcaacattgtttccgagtttcgaaatagtgaaatcaaccatagattccaatgaagttacacaaagcttttcctcacctttgatgccatttgct |
100 |
Q |
| |
|
||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| || |
|
|
| T |
936538 |
aacagcttcgacattgtttccaagtttcgaagtagtgaaatcaaccatagattccaatgatgttacacaaagcttttcctctcctttgatgccattttct |
936439 |
T |
|
| Q |
101 |
tcacactcacttattgttctcttcacaatttcagcttcctttgatccttccttgatggaaaacttgttgagtatgttttccattttgtttgatgaaaagg |
200 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| ||| | || ||||||||||||||| ||| ||| || |||||||| | |||| |||| ||||| | |
|
|
| T |
936438 |
tcacactcacttattgtgttcttcacaatttcagattcttctgttccttccttgatggagaacaagttaaggatgttttcaactttgcttgaagaaaaag |
936339 |
T |
|
| Q |
201 |
gtatggaattagcaacttctctaggcaagaattttgttccattattatttgaagttgtctctttgaattgcaagttcaa |
279 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||||||| ||| || ||||||| | || | | |||||||||||||||| |
|
|
| T |
936338 |
gtattgaattagcaacttctttaggcaagaattttg---catcatcatttgaattggtttttgtgaattgcaagttcaa |
936263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 8 - 232
Target Start/End: Complemental strand, 909781 - 909557
Alignment:
| Q |
8 |
tcaacattgtttccgagtttcgaaatagtgaaatcaaccatagattccaatgaagttacacaaagcttttcctcacctttgatgccatttgcttcacact |
107 |
Q |
| |
|
|||||||||||||| || ||| || |||||||||||| ||||||||||||||| || ||||||||||||||||| |||||||| |||| ||||||||| | |
|
|
| T |
909781 |
tcaacattgtttccaagcttcaaagtagtgaaatcaatcatagattccaatgatgtcacacaaagcttttcctctcctttgataccatatgcttcacatt |
909682 |
T |
|
| Q |
108 |
cacttattgttctcttcacaatttcagcttcctttgatccttccttgatggaaaacttgttgagtatgttttccattttgtttgatgaaaagggtatgga |
207 |
Q |
| |
|
|||||||||| ||||||||||||||| |||| | ||||||| ||||||||| || | ||| || |||||||||| |||||||||||||||||| ||||| |
|
|
| T |
909681 |
cacttattgtgttcttcacaatttcagattccgtcgatccttgcttgatggagaagtagttaaggatgttttccaatttgtttgatgaaaagggaatgga |
909582 |
T |
|
| Q |
208 |
attagcaacttctctaggcaagaat |
232 |
Q |
| |
|
||| ||||| || | |||||||||| |
|
|
| T |
909581 |
attcgcaacgtcaccaggcaagaat |
909557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 975344 - 975127
Alignment:
| Q |
1 |
aacagcttcaacattgtttccgagtttcgaaatagtgaaatcaaccatagattccaatgaagttacacaaagcttttcctcacctttgatgccatttgct |
100 |
Q |
| |
|
|||||| |||||||| || || ||||| ||| | ||||||||||||||||| |||||||| |||||||||| ||||||||| |||||||| || | || |
|
|
| T |
975344 |
aacagcctcaacatttttaccaagtttagaagtcgtgaaatcaaccatagactccaatgatgttacacaaaccttttcctctcctttgatcccttgctct |
975245 |
T |
|
| Q |
101 |
tcacactcacttattgttctcttcacaatttcagcttcctttgatccttccttgatggaaaacttgttgagtatgttttccattttgtttgatgaaaagg |
200 |
Q |
| |
|
||||||||||| || || |||||||||| | | | ||||||| |||| ||||||| |||||||||| ||||| |||||| |||||||||||||||| |
|
|
| T |
975244 |
tcacactcactgatggtgttcttcacaatctgaacaccctttgaccctttcttgatgtttaacttgttgattatgtattccatcttgtttgatgaaaagg |
975145 |
T |
|
| Q |
201 |
gtatggaattagcaactt |
218 |
Q |
| |
|
|||| ||||||||||||| |
|
|
| T |
975144 |
gtattgaattagcaactt |
975127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 419817 - 420034
Alignment:
| Q |
1 |
aacagcttcaacattgtttccgagtttcgaaatagtgaaatcaaccatagattccaatgaagttacacaaagcttttcctcacctttgatgccatttgct |
100 |
Q |
| |
|
|||||| |||||||| || || ||||| ||| ||||||||||||||||||| |||||||| |||||||||| ||||||||| |||||||| || | || |
|
|
| T |
419817 |
aacagcctcaacatttttaccaagtttagaagtagtgaaatcaaccatagactccaatgatgttacacaaaccttttcctctcctttgatcccttgctct |
419916 |
T |
|
| Q |
101 |
tcacactcacttattgttctcttcacaatttcagcttcctttgatccttccttgatggaaaacttgttgagtatgttttccattttgtttgatgaaaagg |
200 |
Q |
| |
|
||||||||||| || || |||||||||| | | | ||||||| |||| ||||||| |||||||||| ||||| ||||| |||||| ||||||| | |
|
|
| T |
419917 |
tcacactcactgatggtgttcttcacaatctgaacaccctttgaccctttcttgatgtttaacttgttgattatgtattccaccttgtttaatgaaaaag |
420016 |
T |
|
| Q |
201 |
gtatggaattagcaactt |
218 |
Q |
| |
|
|||| ||||||||||||| |
|
|
| T |
420017 |
gtattgaattagcaactt |
420034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 924321 - 924080
Alignment:
| Q |
1 |
aacagcttcaacattgtttccgagtttcgaaatagtgaaatcaaccatagattccaatgaagttacacaaagcttttcctcacctttgatgccatttgct |
100 |
Q |
| |
|
||||||||||||||||||||| || || ||| |||||||||||||||| || || ||||| ||||||||| ||||||||| |||| ||| || | |
|
|
| T |
924321 |
aacagcttcaacattgtttccaagcttagaagtagtgaaatcaaccattgactctaatgatgttacacaactcttttcctctccttcgatagcaggcatt |
924222 |
T |
|
| Q |
101 |
tcacactcacttattgttctcttcacaatttcagcttcctttgatccttccttgatggaaaacttgttgagtatgttttccattttgtttgatgaaaagg |
200 |
Q |
| |
|
||||| || || || | |||||||||||| |||| ||||||| ||||||||| || | ||| || |||||||||| ||||||||||||||| | |
|
|
| T |
924221 |
tcacaactaccaatggtgtttttcacaatttcatattccgccgatccttgcttgatggagaagtagttaaggatgttttccactttgtttgatgaaaatg |
924122 |
T |
|
| Q |
201 |
gtatggaattagcaacttctctaggcaagaattttgttccat |
242 |
Q |
| |
|
||||||||||||||||||| | |||||||||| ||| ||||| |
|
|
| T |
924121 |
gtatggaattagcaacttcacgaggcaagaatgttgctccat |
924080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 73 - 228
Target Start/End: Complemental strand, 902002 - 901845
Alignment:
| Q |
73 |
cttttcctcacctttgatgccatttgcttcacactcactt--attgttctcttcacaatttcagcttcctttgatccttccttgatggaaaacttgttga |
170 |
Q |
| |
|
||||| ||| ||||||||| ||||| ||||||||||||| || || |||||||||||| || || |||||||||| |||||||||||| | ||| | |
|
|
| T |
902002 |
cttttgctctcctttgatgtcattttcttcacactcactataatggtattcttcacaattttagactcttttgatccttgcttgatggaaaagtggttaa |
901903 |
T |
|
| Q |
171 |
gtatgttttccattttgtttgatgaaaagggtatggaattagcaacttctctaggcaa |
228 |
Q |
| |
|
| || ||||||| |||||||||||||||||| ||||||||||||||||| | |||||| |
|
|
| T |
901902 |
ggattttttccactttgtttgatgaaaagggaatggaattagcaacttcacgaggcaa |
901845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 916270 - 916039
Alignment:
| Q |
1 |
aacagcttcaacattgtttccgagtttcgaaatagtgaaatcaaccatagattccaatgaagttacacaaagcttttcctcacctttgatgccatttgct |
100 |
Q |
| |
|
||||||||||||||||||||| || || ||| |||||||||||||||| ||||| ||||| ||||||||| ||||||||| |||| ||| | | | |
|
|
| T |
916270 |
aacagcttcaacattgtttccaagcttagaagtagtgaaatcaaccattgattctaatgatgttacacaactcttttcctctccttcgatagtaggcgtt |
916171 |
T |
|
| Q |
101 |
tcacactcacttattgttctcttcacaatttcagcttcctttgatccttccttgatggaaaacttgttgagtatgttttccattttgtttgatgaaaagg |
200 |
Q |
| |
|
||||| | || || | | |||| | |||||| |||| |||||||| ||||||||| || | || || |||||||||| ||||||||||||||| | |
|
|
| T |
916170 |
tcacaataaccaatggcttgtttcaaattttcagattccgctgatccttgcttgatggagaagtaattaaggatgttttccactttgtttgatgaaaatg |
916071 |
T |
|
| Q |
201 |
gtatggaattagcaacttctctaggcaagaat |
232 |
Q |
| |
|
||||||||||||| ||||| | |||||||||| |
|
|
| T |
916070 |
gtatggaattagcgacttcacgaggcaagaat |
916039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0312 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: scaffold0312
Description:
Target: scaffold0312; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 10754 - 10537
Alignment:
| Q |
1 |
aacagcttcaacattgtttccgagtttcgaaatagtgaaatcaaccatagattccaatgaagttacacaaagcttttcctcacctttgatgccatttgct |
100 |
Q |
| |
|
|||||| |||||||| || || ||||| ||| ||||||||||||||||||| |||||||| |||||||||| ||||||||| |||||||| || | || |
|
|
| T |
10754 |
aacagcctcaacatttttaccaagtttagaagtagtgaaatcaaccatagactccaatgatgttacacaaaccttttcctctcctttgatcccttgctct |
10655 |
T |
|
| Q |
101 |
tcacactcacttattgttctcttcacaatttcagcttcctttgatccttccttgatggaaaacttgttgagtatgttttccattttgtttgatgaaaagg |
200 |
Q |
| |
|
||||||||||| || || |||||||||| | | | ||||||| |||| ||||||| |||||||||| ||||| ||||| |||||| ||||||| | |
|
|
| T |
10654 |
tcacactcactgatggtgttcttcacaatctgaacaccctttgaccctttcttgatgtttaacttgttgattatgtattccaccttgtttaatgaaaaag |
10555 |
T |
|
| Q |
201 |
gtatggaattagcaactt |
218 |
Q |
| |
|
|||| ||||||||||||| |
|
|
| T |
10554 |
gtattgaattagcaactt |
10537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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