View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0748_low_34 (Length: 270)
Name: NF0748_low_34
Description: NF0748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0748_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 43 - 225
Target Start/End: Original strand, 55312677 - 55312857
Alignment:
| Q |
43 |
atgaatagtcgagaataattagaacgtgtgcgggtgagagagagtgtggttgatcaatctcaatctcaatctcaatctcaatgggatggcnnnnnnnnnc |
142 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
55312677 |
atgaatagtcgagaataattagaacgtgtgcgggtgagagagagtgtggttgatcaatctcaatctcaatctcaatctcaatgggatggc--aaaaaaac |
55312774 |
T |
|
| Q |
143 |
aagaggtgaaccgttggatcggagaaagcaaagcatggatggaggaaagaaatgaaagggtaaggtaatggtgatgatgatgt |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
55312775 |
aagaggtgaaccgttggatcggagaaagcaaagcatggatggagaaaagaaatgaaagggtaaggtaatggtgatgatgatgt |
55312857 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 124
Target Start/End: Original strand, 43586559 - 43586587
Alignment:
| Q |
96 |
tcaatctcaatctcaatctcaatctcaat |
124 |
Q |
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||||||||||||||||||||||||||||| |
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|
| T |
43586559 |
tcaatctcaatctcaatctcaatctcaat |
43586587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 124
Target Start/End: Original strand, 43586565 - 43586593
Alignment:
| Q |
96 |
tcaatctcaatctcaatctcaatctcaat |
124 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
43586565 |
tcaatctcaatctcaatctcaatctcaat |
43586593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 124
Target Start/End: Original strand, 43586571 - 43586599
Alignment:
| Q |
96 |
tcaatctcaatctcaatctcaatctcaat |
124 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
43586571 |
tcaatctcaatctcaatctcaatctcaat |
43586599 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 124
Target Start/End: Complemental strand, 6418104 - 6418076
Alignment:
| Q |
96 |
tcaatctcaatctcaatctcaatctcaat |
124 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
6418104 |
tcaatctcaatctcaatctcaatctcaat |
6418076 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 124
Target Start/End: Complemental strand, 6418110 - 6418082
Alignment:
| Q |
96 |
tcaatctcaatctcaatctcaatctcaat |
124 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
6418110 |
tcaatctcaatctcaatctcaatctcaat |
6418082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 124
Target Start/End: Complemental strand, 6418116 - 6418088
Alignment:
| Q |
96 |
tcaatctcaatctcaatctcaatctcaat |
124 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
6418116 |
tcaatctcaatctcaatctcaatctcaat |
6418088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 124
Target Start/End: Complemental strand, 6418122 - 6418094
Alignment:
| Q |
96 |
tcaatctcaatctcaatctcaatctcaat |
124 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
6418122 |
tcaatctcaatctcaatctcaatctcaat |
6418094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 124
Target Start/End: Original strand, 40441257 - 40441285
Alignment:
| Q |
96 |
tcaatctcaatctcaatctcaatctcaat |
124 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
40441257 |
tcaatctcaatctcaatctcaatctcaat |
40441285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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