View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0748_low_39 (Length: 250)

Name: NF0748_low_39
Description: NF0748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0748_low_39
NF0748_low_39
[»] chr4 (22 HSPs)
chr4 (42-246)||(30019788-30020000)
chr4 (76-246)||(32429268-32429433)
chr4 (62-163)||(34128221-34128322)
chr4 (67-163)||(34279479-34279575)
chr4 (42-246)||(35096082-35096292)
chr4 (42-148)||(3409548-3409655)
chr4 (62-148)||(18670987-18671073)
chr4 (42-246)||(35090969-35091179)
chr4 (62-137)||(54859138-54859214)
chr4 (62-141)||(14643706-14643785)
chr4 (62-163)||(22118847-22118950)
chr4 (95-141)||(3424704-3424750)
chr4 (62-124)||(34601999-34602061)
chr4 (192-246)||(18716543-18716597)
chr4 (62-161)||(25618268-25618360)
chr4 (62-140)||(47071550-47071634)
chr4 (193-245)||(34279588-34279640)
chr4 (192-246)||(14643826-14643880)
chr4 (192-246)||(18737216-18737270)
chr4 (194-243)||(47071465-47071514)
chr4 (192-246)||(18670894-18670948)
chr4 (192-246)||(34128333-34128387)
[»] chr6 (10 HSPs)
chr6 (42-246)||(21936626-21936830)
chr6 (62-246)||(24509757-24509943)
chr6 (42-219)||(21937651-21937830)
chr6 (42-246)||(20752078-20752268)
chr6 (42-246)||(21275827-21276037)
chr6 (42-148)||(24508800-24508907)
chr6 (62-126)||(11183148-11183212)
chr6 (194-246)||(24508926-24508978)
chr6 (194-250)||(2889262-2889318)
chr6 (194-246)||(2887544-2887596)
[»] chr2 (8 HSPs)
chr2 (62-246)||(42780238-42780416)
chr2 (48-246)||(30283396-30283591)
chr2 (42-246)||(45120440-45120651)
chr2 (42-246)||(17720466-17720676)
chr2 (42-173)||(716386-716518)
chr2 (42-246)||(14917322-14917532)
chr2 (51-161)||(20892299-20892409)
chr2 (62-123)||(16286003-16286064)
[»] chr3 (24 HSPs)
chr3 (62-246)||(49784550-49784729)
chr3 (42-246)||(4049861-4050072)
chr3 (42-246)||(4054995-4055206)
chr3 (42-246)||(33702539-33702750)
chr3 (42-246)||(5481428-5481638)
chr3 (42-246)||(8464804-8465014)
chr3 (42-246)||(10672878-10673088)
chr3 (42-246)||(31076342-31076552)
chr3 (42-246)||(31081447-31081657)
chr3 (76-246)||(6852927-6853102)
chr3 (76-246)||(6858030-6858205)
chr3 (48-246)||(5457957-5458162)
chr3 (42-246)||(10584798-10585008)
chr3 (42-246)||(1302184-1302395)
chr3 (76-246)||(8458365-8458541)
chr3 (76-246)||(10591270-10591445)
chr3 (48-163)||(29827546-29827661)
chr3 (99-246)||(33703353-33703506)
chr3 (42-246)||(10677991-10678203)
chr3 (95-148)||(20891184-20891237)
chr3 (95-148)||(18024174-18024227)
chr3 (194-250)||(18024246-18024302)
chr3 (193-246)||(3187551-3187604)
chr3 (192-250)||(29827474-29827532)
[»] chr5 (14 HSPs)
chr5 (62-246)||(2023018-2023196)
chr5 (42-246)||(13556244-13556455)
chr5 (42-246)||(9877479-9877689)
chr5 (42-246)||(39909012-39909222)
chr5 (42-246)||(9872364-9872574)
chr5 (62-246)||(35368862-35369041)
chr5 (76-246)||(39903899-39904074)
chr5 (53-145)||(43540733-43540824)
chr5 (185-246)||(4555707-4555768)
chr5 (62-146)||(43402094-43402178)
chr5 (65-139)||(43379554-43379623)
chr5 (194-246)||(43540857-43540909)
chr5 (95-148)||(4555777-4555830)
chr5 (206-246)||(25184146-25184186)
[»] chr1 (22 HSPs)
chr1 (62-246)||(10186542-10186729)
chr1 (42-243)||(43358810-43359007)
chr1 (62-246)||(44523992-44524172)
chr1 (42-246)||(28574351-28574561)
chr1 (42-246)||(28598363-28598573)
chr1 (42-246)||(3468121-3468332)
chr1 (42-246)||(19310878-19311077)
chr1 (42-170)||(21431621-21431751)
chr1 (62-146)||(13654468-13654552)
chr1 (62-148)||(16051342-16051428)
chr1 (176-246)||(3465527-3465596)
chr1 (62-123)||(35653214-35653275)
chr1 (88-148)||(17414555-17414615)
chr1 (176-221)||(13654416-13654461)
chr1 (192-246)||(35626226-35626280)
chr1 (62-163)||(1187953-1188054)
chr1 (193-246)||(17414633-17414686)
chr1 (95-136)||(3701492-3701533)
chr1 (48-87)||(43359020-43359059)
chr1 (192-246)||(1187882-1187935)
chr1 (99-137)||(10185836-10185874)
chr1 (192-246)||(21431768-21431822)
[»] chr8 (12 HSPs)
chr8 (42-246)||(43956790-43956999)
chr8 (42-246)||(14314851-14315061)
chr8 (42-246)||(14318555-14318765)
chr8 (42-246)||(18494117-18494326)
chr8 (62-246)||(25953136-25953309)
chr8 (42-246)||(26981815-26982026)
chr8 (42-246)||(10340907-10341107)
chr8 (42-246)||(26986929-26987139)
chr8 (42-246)||(34108283-34108495)
chr8 (42-147)||(18608590-18608695)
chr8 (62-148)||(1781975-1782061)
chr8 (192-246)||(18608724-18608778)
[»] chr7 (14 HSPs)
chr7 (62-148)||(5440261-5440347)
chr7 (62-148)||(5449271-5449357)
chr7 (42-246)||(12856843-12857053)
chr7 (42-246)||(26051075-26051285)
chr7 (42-246)||(26056188-26056398)
chr7 (42-246)||(26060434-26060644)
chr7 (42-246)||(26065547-26065757)
chr7 (62-163)||(4181364-4181465)
chr7 (42-246)||(12851728-12851940)
chr7 (176-246)||(14610418-14610487)
chr7 (62-136)||(37459824-37459898)
chr7 (192-246)||(4181478-4181532)
chr7 (42-122)||(14610512-14610593)
chr7 (193-246)||(37459938-37459991)
[»] scaffold0006 (2 HSPs)
scaffold0006 (62-146)||(144229-144313)
scaffold0006 (176-221)||(144177-144222)
[»] scaffold0223 (1 HSPs)
scaffold0223 (42-246)||(1959-2169)
[»] scaffold0005 (2 HSPs)
scaffold0005 (62-141)||(173507-173586)
scaffold0005 (192-246)||(173412-173466)


Alignment Details
Target: chr4 (Bit Score: 137; Significance: 1e-71; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 42 - 246
Target Start/End: Original strand, 30019788 - 30020000
Alignment:
Q  42 aacctgtggcaaaaaggtgct-aatgaaccataatattgattcaagtcaaatgagtgttttctctcatgtgaagggtcatataatgcactataaatgttt 140  Q
    ||||| ||||||||||||||| |||||||||||| || ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  30019788 aacctttggcaaaaaggtgcttaatgaaccataacat-gattcaagtcaaatgggtgctttctctcatgtgaagggtcatataatgcactataaatgttt 30019886  T
Q  141 ggcatttgaccattagtttgacagagaacag--------aacaacacacaattttggatagaattttgttacattaacaacataattcttcaccattctt 232  Q
    ||||||||  |||||||||||||||||||||        ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||     
T  30019887 ggcatttgggcattagtttgacagagaacagaacaacacaacaacacacaattttggacagaattttgttacattaacaacataattcttcaccattctc 30019986  T
Q  233 ttactctaaatcat 246  Q
    ||||||||||||||    
T  30019987 ttactctaaatcat 30020000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 76 - 246
Target Start/End: Original strand, 32429268 - 32429433
Alignment:
Q  76 attgattcaagtcaaatgagtgttttctctcatgtgaagggtcatataatgcactataaatgtttggcatttgaccattagtttgacagagaacagaaca 175  Q
    |||||||||||||||| | |||||||||||||| ||||| |||||||||||||||||||||| ||||||||||  |||||||| ||||     || ||||    
T  32429268 attgattcaagtcaaaggggtgttttctctcatttgaagagtcatataatgcactataaatgcttggcatttgtgcattagttggaca-----cacaaca 32429362  T
Q  176 acacacaattttggatagaattttgttacattaacaacataattcttcaccattcttttactctaaatcat 246  Q
    ||||||||||||||| |||||||||||  ||||||||||||||||| |  |||||| ||||||||||||||    
T  32429363 acacacaattttggacagaattttgttggattaacaacataattctccctcattctcttactctaaatcat 32429433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 62 - 163
Target Start/End: Original strand, 34128221 - 34128322
Alignment:
Q  62 taatgaaccataatattgattcaagtcaaatgagtgttttctctcatgtgaagggtcatataatgcactataaatgtttggcatttgaccattagtttga 161  Q
    |||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||| |||||| |||||    
T  34128221 taatgaactataacattgattcaagtcaaatgagtgttttctctaatgtgaagggtcatataatgcactataaatgcttgacatttggccattaatttga 34128320  T
Q  162 ca 163  Q
    ||    
T  34128321 ca 34128322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 67 - 163
Target Start/End: Original strand, 34279479 - 34279575
Alignment:
Q  67 aaccataatattgattcaagtcaaatgagtgttttctctcatgtgaagggtcatataatgcactataaatgtttggcatttgaccattagtttgaca 163  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||| ||||| |||||||    
T  34279479 aaccataacattgattcaagtcaaatgagtgttttctctcatgtgaagggtcatataatgcactataaatgctcgacatttgagcattaatttgaca 34279575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 42 - 246
Target Start/End: Complemental strand, 35096292 - 35096082
Alignment:
Q  42 aacctgtggcaaaaaggtgct-aatgaaccataatattgattcaagtcaaatgagtgttttctctcatgtgaagggtcatataatgcactataaatgttt 140  Q
    ||||| |||||||| |||||| |||||| |||   |||||||||||| |||   ||| |||||||||||||||| |||||||||||||||||||||| ||    
T  35096292 aacctttggcaaaagggtgcttaatgaatcatggcattgattcaagttaaagaggtgctttctctcatgtgaagagtcatataatgcactataaatgctt 35096193  T
Q  141 ggcatttgaccattagtttgacagagaa------cagaacaacacacaattttggatagaattttgttacattaacaacataattcttcaccattctttt 234  Q
    | ||||||  ||||||||  | | | ||      || ||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||    
T  35096192 gacatttgggcattagttgaatatacaaaaaccacacaactacacacaattt-ggacagaattttgttacattaacaacataattcttcaccattctatt 35096094  T
Q  235 actctaaatcat 246  Q
    | ||||||||||    
T  35096093 attctaaatcat 35096082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 42 - 148
Target Start/End: Original strand, 3409548 - 3409655
Alignment:
Q  42 aacctgtggcaaaaaggtgct-aatgaaccataatattgattcaagtcaaatgagtgttttctctcatgtgaagggtcatataatgcactataaatgttt 140  Q
    ||||| |||||||  |||||| |||||| ||||  |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||    
T  3409548 aacctttggcaaaggggtgcttaatgaatcatagcattgattcaagtcaaaggagtgttttctctcatgtgaagggtcatataatgcactataaatattt 3409647  T
Q  141 ggcatttg 148  Q
    | ||||||    
T  3409648 gacatttg 3409655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 62 - 148
Target Start/End: Complemental strand, 18671073 - 18670987
Alignment:
Q  62 taatgaaccataatattgattcaagtcaaatgagtgttttctctcatgtgaagggtcatataatgcactataaatgtttggcatttg 148  Q
    ||||||||||||  |||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  18671073 taatgaaccatagcattgattcaagtcaaatgggtgctttctctcatgtgaagggtcatataatggactataaatgcttggcatttg 18670987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 42 - 246
Target Start/End: Complemental strand, 35091179 - 35090969
Alignment:
Q  42 aacctgtggcaaaaaggtgct-aatgaaccataatattgattcaagtcaaatgagtgttttctctcatgtgaagggtcatataatgcactataaatgttt 140  Q
    ||||| |||||||| |||||| |||||| |||   |||||||||||| |||   ||| |||||||||||||||| |||||||||||||||||||||| ||    
T  35091179 aacctttggcaaaagggtgcttaatgaatcatggcattgattcaagttaaagaggtgctttctctcatgtgaagagtcatataatgcactataaatgctt 35091080  T
Q  141 ggcatttgaccattagtttgacagaga------acagaacaacacacaattttggatagaattttgttacattaacaacataattcttcaccattctttt 234  Q
    | ||||||  ||||||||  | ||| |      | | ||| |||||||| |||||| ||||||||||||||||||||||||||||| |||  ||||| ||    
T  35091079 gacatttgggcattagttgaagagacaaaaaccatacaactacacacaa-tttggacagaattttgttacattaacaacataattcatcaaaattctatt 35090981  T
Q  235 actctaaatcat 246  Q
    | ||||||||||    
T  35090980 attctaaatcat 35090969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 62 - 137
Target Start/End: Original strand, 54859138 - 54859214
Alignment:
Q  62 taatgaaccataatattgattcaagtcaaatgag-tgttttctctcatgtgaagggtcatataatgcactataaatg 137  Q
    ||||||||||||| |||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||    
T  54859138 taatgaaccataacattgattcaagtcaaagggggtgttttctctcatgtgaagggtcatataatgcactataaatg 54859214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 62 - 141
Target Start/End: Original strand, 14643706 - 14643785
Alignment:
Q  62 taatgaaccataatattgattcaagtcaaatgagtgttttctctcatgtgaagggtcatataatgcactataaatgtttg 141  Q
    ||||||||| ||  |||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||    
T  14643706 taatgaaccttagcattgattcaagtcaaatgggtgttttctatcatgtgaagggtcatataatgcgctataaatgtttg 14643785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 62 - 163
Target Start/End: Complemental strand, 22118950 - 22118847
Alignment:
Q  62 taatgaaccataatattgattcaagtcaaatgagtgt--tttctctcatgtgaagggtcatataatgcactataaatgtttggcatttgaccattagttt 159  Q
    |||||||||||| |||| |||||||||||| | ||||  |||||||||||||||||||||||||||  |||||||||| ||| ||||||  ||||| |||    
T  22118950 taatgaaccatattattcattcaagtcaaaggggtgtattttctctcatgtgaagggtcatataatatactataaatgcttgacatttgggcattaattt 22118851  T
Q  160 gaca 163  Q
    ||||    
T  22118850 gaca 22118847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 95 - 141
Target Start/End: Original strand, 3424704 - 3424750
Alignment:
Q  95 gtgttttctctcatgtgaagggtcatataatgcactataaatgtttg 141  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||    
T  3424704 gtgttttctctcatgtgaagggtcatataatgcactataaatatttg 3424750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 62 - 124
Target Start/End: Original strand, 34601999 - 34602061
Alignment:
Q  62 taatgaaccataatattgattcaagtcaaatgagtgttttctctcatgtgaagggtcatataa 124  Q
    |||||||| |||  |||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  34601999 taatgaactatagcattgattcaagtcaaatgagtgttttttctcatgtgaatggtcatataa 34602061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 192 - 246
Target Start/End: Complemental strand, 18716597 - 18716543
Alignment:
Q  192 agaattttgttacattaacaacataattcttcaccattcttttactctaaatcat 246  Q
    ||||||||||| |||||||||||||||||| | ||||||| ||||||||||||||    
T  18716597 agaattttgttgcattaacaacataattctcccccattctcttactctaaatcat 18716543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 62 - 161
Target Start/End: Original strand, 25618268 - 25618360
Alignment:
Q  62 taatgaaccataatattgattcaagtcaaatgagtgttttctctcatgtgaagggtcatataatgcactataaatgtttggcatttgaccattagtttga 161  Q
    ||||||| ||||| |||||||||||||| |   ||||||||||||||||       |||||||||||||||||||| ||||||||||  |||||||||||    
T  25618268 taatgaatcataacattgattcaagtcacagaggtgttttctctcatgt-------catataatgcactataaatgcttggcatttgggcattagtttga 25618360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 62 - 140
Target Start/End: Complemental strand, 47071634 - 47071550
Alignment:
Q  62 taatgaaccataatattgattcaagtcaaatgagtgttttctctcatgt------gaagggtcatataatgcactataaatgttt 140  Q
    |||||||||||   ||||||||||||||||  |||||||||||||||||      |||||||||||||||| |||||||||||||    
T  47071634 taatgaaccattgcattgattcaagtcaaaaaagtgttttctctcatgttcatgtgaagggtcatataatgtactataaatgttt 47071550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 193 - 245
Target Start/End: Original strand, 34279588 - 34279640
Alignment:
Q  193 gaattttgttacattaacaacataattcttcaccattcttttactctaaatca 245  Q
    |||||||||||||||||||||||||||||||  | |||| |||||||||||||    
T  34279588 gaattttgttacattaacaacataattcttcctcgttctcttactctaaatca 34279640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 192 - 246
Target Start/End: Original strand, 14643826 - 14643880
Alignment:
Q  192 agaattttgttacattaacaacataattcttcaccattcttttactctaaatcat 246  Q
    ||||||||||||||| ||||||||||||||||   ||||| ||||||||||||||    
T  14643826 agaattttgttacatcaacaacataattcttcctaattctcttactctaaatcat 14643880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 192 - 246
Target Start/End: Complemental strand, 18737270 - 18737216
Alignment:
Q  192 agaattttgttacattaacaacataattcttcaccattcttttactctaaatcat 246  Q
    ||||||||||| |||||||||||||||||| |  |||||| ||||||||||||||    
T  18737270 agaattttgttgcattaacaacataattctccctcattctcttactctaaatcat 18737216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 194 - 243
Target Start/End: Complemental strand, 47071514 - 47071465
Alignment:
Q  194 aattttgttacattaacaacataattcttcaccattcttttactctaaat 243  Q
    |||||||||||||||||||||||||||| |  |||||| |||||||||||    
T  47071514 aattttgttacattaacaacataattctccctcattctcttactctaaat 47071465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 246
Target Start/End: Complemental strand, 18670948 - 18670894
Alignment:
Q  192 agaattttgttacattaacaacataattcttcaccattcttttactctaaatcat 246  Q
    |||||| |||| |||||||||||||||||| |  |||||| ||||||||||||||    
T  18670948 agaattatgttgcattaacaacataattctccctcattctcttactctaaatcat 18670894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 246
Target Start/End: Original strand, 34128333 - 34128387
Alignment:
Q  192 agaattttgttacattaacaacataattcttcaccattcttttactctaaatcat 246  Q
    ||||||||||| |||||||| ||||||||| |  |||||| ||||||||||||||    
T  34128333 agaattttgttgcattaacatcataattctccctcattctcttactctaaatcat 34128387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 102; Significance: 9e-51; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 42 - 246
Target Start/End: Original strand, 21936626 - 21936830
Alignment:
Q  42 aacctgtggcaaaaaggtgct-aatgaaccataatattgattcaagtcaaatgagtgttttctctcatgtgaagggtcatataatgcactataaatgttt 140  Q
    ||||| ||||||||||||||| ||| |||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||    
T  21936626 aacctttggcaaaaaggtgcttaataaaccataacattgattcaagtcaaaggggtgttttctctcatgtgaagggtcatataatgcactataaatgctt 21936725  T
Q  141 ggcatttgaccattagtttgacagagaacagaacaacacacaattttggatagaattttgttacattaacaacataattcttcaccattcttttactcta 240  Q
      ||||||  ||||||||| ||| | |  | |||||||||||||||||||  ||| ||||||||||||||||||||||||| || ||||||  |||||||    
T  21936726 aacatttgggcattagtttaacaca-acaacaacaacacacaattttggactgaactttgttacattaacaacataattctccatcattctcatactcta 21936824  T
Q  241 aatcat 246  Q
    ||||||    
T  21936825 aatcat 21936830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 62 - 246
Target Start/End: Complemental strand, 24509943 - 24509757
Alignment:
Q  62 taatgaaccataatattgattcaagtcaaatgagtgttttctctcatgtgaagggtcatataatgcactataaatgtttggcatttgaccattagtttga 161  Q
    ||||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||  ||||||||| |    
T  24509943 taatgaaccataacattgattcaagtcaaatgggtgttttctctcatgtgaaggttcatataatgcactataaatgcttgacatttgggcattagtttaa 24509844  T
Q  162 ca-gagaac-agaacaacacacaattttggatagaattttgttacattaacaacataattcttcaccattcttttactctaaatcat 246  Q
    || || ||| | ||  | ||| ||||||| | | |||| ||||||||||||||||||||||| || |||||||||||| ||||||||    
T  24509843 cacgacaacaacaattatacataattttgtacaaaattatgttacattaacaacataattctccatcattcttttactttaaatcat 24509757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 42 - 219
Target Start/End: Complemental strand, 21937830 - 21937651
Alignment:
Q  42 aacctgtggcaaaaaggtgct-aatgaaccataatattgattcaagtcaaatgagtgttttctctcatgtgaagggtcatataatgcactataaatgttt 140  Q
    ||||| |||||||| |||| | |||||||||| | |||||||||||||||| | || ||||||||||||||||||||||||||| |||||||||||||||    
T  21937830 aacctttggcaaaagggtgtttaatgaaccatcacattgattcaagtcaaaggggtattttctctcatgtgaagggtcatataacgcactataaatgttt 21937731  T
Q  141 ggcatttgaccattagtttgaca-gagaac-agaacaacacacaattttggatagaattttgttacattaacaacataatt 219  Q
    ||||||||  ||||||||| |||  | ||| | ||||||||||||||||||| | ||||||| ||||||||||||||||||    
T  21937730 ggcatttgggcattagtttaacacaacaacaacaacaacacacaattttggacataattttg-tacattaacaacataatt 21937651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 42 - 246
Target Start/End: Original strand, 20752078 - 20752268
Alignment:
Q  42 aacctgtggcaaaaaggtgct-aatgaaccataatattgattcaagtcaaatgagtgttttctctcatgtgaagggtcatataatgcactataaatgttt 140  Q
    ||||| || ||||| |||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||  ||    
T  20752078 aacctttgacaaaatggtgcttaatgaaccataacattgattcaagtcaaatgagtgttttctctcatgtgaaaggtcatctaatgcactataaatactt 20752177  T
Q  141 ggcatttgaccattagtttgacagagaacagaacaacacacaattttggatagaattttgttacattaacaacataattcttcaccattcttttactcta 240  Q
    |||||||   |||||  |||               ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||    
T  20752178 ggcatttaggcattaacttg---------------acacacagttttggaaagaattttgttacattaacaacataattcttcaccattctcttactata 20752262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 42 - 246
Target Start/End: Complemental strand, 21276037 - 21275827
Alignment:
Q  42 aacctgtggcaaaaaggtgct-aatgaaccataatattgattcaagtcaaatgagtgttttctctcatgtgaagggtcatataatgcactataaatgttt 140  Q
    ||||| |||||||| |||||| |||||| |||   |||||||||||| |||   ||| |||||||||||||||| |||||||||||||||||||||| ||    
T  21276037 aacctttggcaaaagggtgcttaatgaatcatggcattgattcaagttaaagaggtgctttctctcatgtgaagagtcatataatgcactataaatgctt 21275938  T
Q  141 ggcatttgaccattagtttgacagagaa------cagaacaacacacaattttggatagaattttgttacattaacaacataattcttcaccattctttt 234  Q
    | ||||||  ||||||||  | | | ||      || ||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||    
T  21275937 gacatttgggcattagttgaatatacaaaaaccacacaactacacacaattt-ggacagaattttgttacattaacaacataattcttcaccattctatt 21275839  T
Q  235 actctaaatcat 246  Q
    | ||||||||||    
T  21275838 attctaaatcat 21275827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 42 - 148
Target Start/End: Original strand, 24508800 - 24508907
Alignment:
Q  42 aacctgtggcaaaaaggtgct-aatgaaccataatattgattcaagtcaaatgagtgttttctctcatgtgaagggtcatataatgcactataaatgttt 140  Q
    ||||| |||||||| |||||| |||||||||||| |||||||||||||||| | ||||||||||||||| |||||||||||| ||| ||| |||||||||    
T  24508800 aacctttggcaaaagggtgcttaatgaaccataacattgattcaagtcaaaggggtgttttctctcatgagaagggtcatattatgtactgtaaatgttt 24508899  T
Q  141 ggcatttg 148  Q
    ||||||||    
T  24508900 ggcatttg 24508907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 62 - 126
Target Start/End: Original strand, 11183148 - 11183212
Alignment:
Q  62 taatgaaccataatattgattcaagtcaaatgagtgttttctctcatgtgaagggtcatataatg 126  Q
    ||||||||||||| | |||||||||||||||| |||| ||||| |||||||||| ||||||||||    
T  11183148 taatgaaccataacactgattcaagtcaaatgggtgtgttctcccatgtgaaggctcatataatg 11183212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 194 - 246
Target Start/End: Original strand, 24508926 - 24508978
Alignment:
Q  194 aattttgttacattaacaacataattcttcaccattcttttactctaaatcat 246  Q
    |||| ||||||||||||||||||||||| || |||||||||||||||||||||    
T  24508926 aattatgttacattaacaacataattctccatcattcttttactctaaatcat 24508978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 250
Target Start/End: Complemental strand, 2889318 - 2889262
Alignment:
Q  194 aattttgttacattaacaacataattcttcaccattcttttactctaaatcattcat 250  Q
    ||||||||| ||||| |||||||||||| |  |||||| ||||||||||||||||||    
T  2889318 aattttgttccattaccaacataattctccctcattctcttactctaaatcattcat 2889262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 246
Target Start/End: Complemental strand, 2887596 - 2887544
Alignment:
Q  194 aattttgttacattaacaacataattcttcaccattcttttactctaaatcat 246  Q
    ||||||||| ||||| |||||||||||| |  |||||| ||||||||||||||    
T  2887596 aattttgttccattaccaacataattctccctcattctcttactctaaatcat 2887544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 101; Significance: 4e-50; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 62 - 246
Target Start/End: Complemental strand, 42780416 - 42780238
Alignment:
Q  62 taatgaaccataatattgattcaagtcaaatgagtgttttctctcatgtgaagggtcatataatgcactataaatgtttggcatttgaccattagtttga 161  Q
    ||||||||||||| |||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||| ||| || |||  |||||||| ||    
T  42780416 taatgaaccataacattgattcaagtcaaaggggtgttttctctcatgtgaagagtcatataatgcactataaatgattgacagttgggcattagttgga 42780317  T
Q  162 cagagaacagaacaacacacaattttggatagaattttgttacattaacaacataattcttcaccattcttttactctaaatcat 246  Q
    ||     || ||||||||||||||||||| |||||||||||||||| || |||||||||||||||||||| ||||||||||||||    
T  42780316 ca-----cacaacaacacacaattttggacagaattttgttacatt-actacataattcttcaccattctcttactctaaatcat 42780238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 48 - 246
Target Start/End: Original strand, 30283396 - 30283591
Alignment:
Q  48 tggcaaaaaggtgct-aatgaaccataatattgattcaagtcaaatgagtgttttctctcatgtgaagggtcatataatgcactataaatgtttggcatt 146  Q
    |||||||| |||||| ||||||||||||||||||||||||| ||| | ||||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  30283396 tggcaaaagggtgcttaatgaaccataatattgattcaagttaaaggggtgttttctttcatgtgaagagtcatataatgcactataaatgtttggcatt 30283495  T
Q  147 tgaccattagtttgacagagaacagaacaacacacaattttggatagaattttgttacattaacaacataattcttcaccattcttttactctaaatcat 246  Q
    ||  ||||||||    | |  ||| ||| | |||||| |||||| |||||||||||||||||||||||||||||| || | |||| ||||||||||||||    
T  30283496 tgggcattagtt---gaaaacacacaactaaacacaa-tttggacagaattttgttacattaacaacataattctccatccttctcttactctaaatcat 30283591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 42 - 246
Target Start/End: Complemental strand, 45120651 - 45120440
Alignment:
Q  42 aacctgtggcaaaaaggtgct-aatgaaccataatattgattcaagtcaaatgagtgttttctctcatgtgaagggtcatataatgcactataaatgttt 140  Q
    ||||| |||||||| |||||| |||||| ||| | |||||||||||| |||   ||| |||||||||||||||| |||||||||||||||||||||| ||    
T  45120651 aacctttggcaaaagggtgcttaatgaatcatgacattgattcaagttaaagaggtgctttctctcatgtgaagagtcatataatgcactataaatgctt 45120552  T
Q  141 ggcatttgaccattagtttgacagaga-------acagaacaacacacaattttggatagaattttgttacattaacaacataattcttcaccattcttt 233  Q
    | ||||||  |||||||| || | | |       ||| ||| |||||||| |||||| ||||||||||||||||||||||||||||||||| |||||| |    
T  45120551 gacatttgggcattagttggatatacaaaaaaccacacaactacacacaa-tttggacagaattttgttacattaacaacataattcttcatcattctat 45120453  T
Q  234 tactctaaatcat 246  Q
    || ||||||||||    
T  45120452 tattctaaatcat 45120440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 42 - 246
Target Start/End: Original strand, 17720466 - 17720676
Alignment:
Q  42 aacctgtggcaaaaaggtgct-aatgaaccataatattgattcaagtcaaatgagtgttttctctcatgtgaagggtcatataatgcactataaatgttt 140  Q
    ||||| |||||||| |||||| |||||| |||   |||||||||||| |||   ||| |||||||||||||||| |||||||||||||||||||||| ||    
T  17720466 aacctttggcaaaagggtgcttaatgaatcatggcattgattcaagttaaagaggtgctttctctcatgtgaagagtcatataatgcactataaatgctt 17720565  T
Q  141 ggcatttgaccattagtttgacagagaa------cagaacaacacacaattttggatagaattttgttacattaacaacataattcttcaccattctttt 234  Q
    | ||||||  ||||||||  | | | ||      || ||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||    
T  17720566 gacatttgggcattagttgaagatacaaaaaccacacaactacacacaattt-ggacagaattttgttacattaacaacataattcttcaccattctatt 17720664  T
Q  235 actctaaatcat 246  Q
    | ||||||||||    
T  17720665 attctaaatcat 17720676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 42 - 173
Target Start/End: Complemental strand, 716518 - 716386
Alignment:
Q  42 aacctgtggcaaaaaggtgct-aatgaaccataatattgattcaagtcaaatgagtgttttctctcatgtgaagggtcatataatgcactataaatgttt 140  Q
    ||||| ||||||||||||| | |||| ||| ||| |||||||||||||||| |  ||||||||||||| |||| ||||||||||||||||||||||||||    
T  716518 aacctttggcaaaaaggtgtttaatggaccgtaacattgattcaagtcaaagggatgttttctctcatatgaaaggtcatataatgcactataaatgttt 716419  T
Q  141 ggcatttgaccattagtttgacagagaacagaa 173  Q
    ||||||||  ||||||| |||| || |||||||    
T  716418 ggcatttgggcattagtgtgactgacaacagaa 716386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 42 - 246
Target Start/End: Original strand, 14917322 - 14917532
Alignment:
Q  42 aacctgtggcaaaaaggtgct-aatgaaccataatattgattcaagtcaaatgagtgttttctctcatgtgaagggtcatataatgcactataaatgttt 140  Q
    ||||| |||||||| |||||| |||||| |||   |||||||||||| ||||   ||||||||||||||||||| |||||||||||||||||||||| ||    
T  14917322 aacctttggcaaaagggtgcttaatgaatcatggcattgattcaagttaaatagctgttttctctcatgtgaagagtcatataatgcactataaatgctt 14917421  T
Q  141 ggcatttgaccattagtttgacagaga------acagaacaacacacaattttggatagaattttgttacattaacaacataattcttcaccattctttt 234  Q
    | ||||||  ||||||||  | | | |      ||| ||| ||||||||  ||||| ||||||||||||||||||||||||||||||||| |||||| ||    
T  14917422 gacatttgggcattagttgaagatacaaaaaccacacaactacacacaa-cttggacagaattttgttacattaacaacataattcttcatcattctatt 14917520  T
Q  235 actctaaatcat 246  Q
    | ||||||||||    
T  14917521 attctaaatcat 14917532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 51 - 161
Target Start/End: Original strand, 20892299 - 20892409
Alignment:
Q  51 caaaaaggtgct-aatgaaccataatattgattcaagtcaaatgagtgttttctctcatgtgaagggtcatataatgcactataaatgtttggcatttga 149  Q
    |||||||||||| ||||||||| || |||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||  ||| ||||||     
T  20892299 caaaaaggtgcttaatgaacca-aacattgattcaaatcaaatgagtgttttctctcgtgtgaagagtcatataatgcactataaatacttgacatttgg 20892397  T
Q  150 ccattagtttga 161  Q
     |||||||||||    
T  20892398 gcattagtttga 20892409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 62 - 123
Target Start/End: Complemental strand, 16286064 - 16286003
Alignment:
Q  62 taatgaaccataatattgattcaagtcaaatgagtgttttctctcatgtgaagggtcatata 123  Q
    |||||||| ||||  |||||| |||| ||||| |||||||||||||||||||||||||||||    
T  16286064 taatgaactataacgttgattgaagttaaatgggtgttttctctcatgtgaagggtcatata 16286003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 97; Significance: 9e-48; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 62 - 246
Target Start/End: Complemental strand, 49784729 - 49784550
Alignment:
Q  62 taatgaaccataatattgattcaagtcaaatgagtgttttctctcatgtgaagggtcatataatgcactataaatgtttggcatttgaccattagtttga 161  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||  |||||||| ||    
T  49784729 taatgaatcataacattgattcaagtcaaatgagtgttttctctcatgtgaagagtcatataatgcactataaatgcttgacatttgggcattagttgga 49784630  T
Q  162 cagagaacagaacaacacacaattttggatagaattttgttacattaacaacataattcttcaccattcttttactctaaatcat 246  Q
    |     | | ||||||||||||||||||| ||||||||||| |||||||||||||||||  |  |||||||||||| ||||||||    
T  49784629 c-----atacaacaacacacaattttggacagaattttgttgcattaacaacataattccccctcattcttttactttaaatcat 49784550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 42 - 246
Target Start/End: Complemental strand, 4050072 - 4049861
Alignment:
Q  42 aacctgtggcaaaaaggtgct-aatgaaccataatattgattcaagtcaaatgagtgttttctctcatgtgaagggtcatataatgcactataaatgttt 140  Q
    ||||| |||||||| |||||| |||||| |||   |||||||||||| |||   |||||||||||||||||||| |||||||||||||||||||||| ||    
T  4050072 aacctttggcaaaagggtgcttaatgaatcatggcattgattcaagttaaagaggtgttttctctcatgtgaagagtcatataatgcactataaatgctt 4049973  T
Q  141 ggcatttgaccattagtttgacagagaa-------cagaacaacacacaattttggatagaattttgttacattaacaacataattcttcaccattcttt 233  Q
    | ||||||  ||||||||  | | | ||       || ||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |    
T  4049972 gacatttgggcattagttgaagatacaaaaaaccacacaactacacacaattt-ggacagaattttgttacattaacaacataattcttcaccattctat 4049874  T
Q  234 tactctaaatcat 246  Q
    || ||||||||||    
T  4049873 tattctaaatcat 4049861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 42 - 246
Target Start/End: Complemental strand, 4055206 - 4054995
Alignment:
Q  42 aacctgtggcaaaaaggtgct-aatgaaccataatattgattcaagtcaaatgagtgttttctctcatgtgaagggtcatataatgcactataaatgttt 140  Q
    ||||| |||||||| |||||| |||||| |||   |||||||||||| |||   ||| |||||||||||||||| |||||||||||||||||||||| ||    
T  4055206 aacctttggcaaaagggtgcttaatgaatcatggcattgattcaagttaaagaggtgctttctctcatgtgaagagtcatataatgcactataaatgctt 4055107  T
Q  141 ggcatttgaccattagtttgacagagaa-------cagaacaacacacaattttggatagaattttgttacattaacaacataattcttcaccattcttt 233  Q
    | ||||||  ||||||||  | | | ||       || ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |    
T  4055106 gacatttgggcattagttgaagatacaaaaaaccacacaactacacacaattt-ggatagaattttgttacattaacaacataattcttcaccattctat 4055008  T
Q  234 tactctaaatcat 246  Q
    || ||||||||||    
T  4055007 tattctaaatcat 4054995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 42 - 246
Target Start/End: Original strand, 33702539 - 33702750
Alignment:
Q  42 aacctgtggcaaaaaggtgct-aatgaaccataatattgattcaagtcaaatgagtgttttctctcatgtgaagggtcatataatgcactataaatgttt 140  Q
    ||||| |||||||| |||||| |||||| |||   |||||||||||| |||   ||| |||||||||||||||| |||||||||||||||||||||| ||    
T  33702539 aacctttggcaaaagggtgcttaatgaatcatggcattgattcaagttaaagaggtgctttctctcatgtgaagagtcatataatgcactataaatgctt 33702638  T
Q  141 ggcatttgaccattagtttgacagagaa-------cagaacaacacacaattttggatagaattttgttacattaacaacataattcttcaccattcttt 233  Q
    | ||||||  ||||||||  | ||| ||       || ||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |    
T  33702639 gacatttgggcattagttgaatagacaaaaaaccacacaactacacacaattt-ggacagaattttgttacattaacaacataattcttcaccattctat 33702737  T
Q  234 tactctaaatcat 246  Q
    || ||||||||||    
T  33702738 tattctaaatcat 33702750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 42 - 246
Target Start/End: Original strand, 5481428 - 5481638
Alignment:
Q  42 aacctgtggcaaaaaggtgct-aatgaaccataatattgattcaagtcaaatgagtgttttctctcatgtgaagggtcatataatgcactataaatgttt 140  Q
    ||||| |||||||| |||||| |||||| ||| | |||||||||||| ||||  ||| |||||||||||||||| |||||||||||||||||||||| ||    
T  5481428 aacctttggcaaaagggtgcttaatgaatcatgacattgattcaagttaaataggtgctttctctcatgtgaagagtcatataatgcactataaatgctt 5481527  T
Q  141 ggcatttgaccattagtttgacagaga------acagaacaacacacaattttggatagaattttgttacattaacaacataattcttcaccattctttt 234  Q
    | ||||||  ||||||||  | | | |      ||| ||| ||||||||  ||||| ||||||||||||||||||||||||||||||||| |||||| ||    
T  5481528 gacatttgggcattagttgaagataaaaaaaccacacaactacacacaa-cttggacagaattttgttacattaacaacataattcttcatcattctatt 5481626  T
Q  235 actctaaatcat 246  Q
    | ||||||||||    
T  5481627 attctaaatcat 5481638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 42 - 246
Target Start/End: Complemental strand, 8465014 - 8464804
Alignment:
Q  42 aacctgtggcaaaaaggtgct-aatgaaccataatattgattcaagtcaaatgagtgttttctctcatgtgaagggtcatataatgcactataaatgttt 140  Q
    ||||| |||||||| |||||| |||||| ||| | |||||||||||| |||   ||| |||||||||||||||| |||||||||||||||||||||| ||    
T  8465014 aacctttggcaaaatggtgcttaatgaatcatgacattgattcaagttaaagaggtgctttctctcatgtgaagagtcatataatgcactataaatgctt 8464915  T
Q  141 ggcatttgaccattagtttgacagaga------acagaacaacacacaattttggatagaattttgttacattaacaacataattcttcaccattctttt 234  Q
    | ||||||  ||||||||  | | | |      ||| ||| |||||||| |||||| ||||||||||||||||||||||||||||||||| |||||| ||    
T  8464914 gacatttgggcattagttgaatatacaaaaaccacacaactacacacaa-tttggacagaattttgttacattaacaacataattcttcatcattctatt 8464816  T
Q  235 actctaaatcat 246  Q
    | ||||||||||    
T  8464815 attctaaatcat 8464804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 42 - 246
Target Start/End: Original strand, 10672878 - 10673088
Alignment:
Q  42 aacctgtggcaaaaaggtgct-aatgaaccataatattgattcaagtcaaatgagtgttttctctcatgtgaagggtcatataatgcactataaatgttt 140  Q
    ||||| |||||||| |||||| |||||| |||   |||||||||||| |||   ||| |||||||||||||||| |||||||||||||||||||||| ||    
T  10672878 aacctttggcaaaagggtgcttaatgaatcatggcattgattcaagttaaagaggtgctttctctcatgtgaagagtcatataatgcactataaatgctt 10672977  T
Q  141 ggcatttgaccattagtttgacagagaa------cagaacaacacacaattttggatagaattttgttacattaacaacataattcttcaccattctttt 234  Q
    | ||||||  ||||||||  | | | ||      || ||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||    
T  10672978 gacatttgggcattagttgaaaatacaaaaaccacacaactacacacaattt-ggacagaattttgttacattaacaacataattcttcaccattctatt 10673076  T
Q  235 actctaaatcat 246  Q
    | ||||||||||    
T  10673077 attctaaatcat 10673088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 42 - 246
Target Start/End: Original strand, 31076342 - 31076552
Alignment:
Q  42 aacctgtggcaaaaaggtgct-aatgaaccataatattgattcaagtcaaatgagtgttttctctcatgtgaagggtcatataatgcactataaatgttt 140  Q
    ||||| |||||||| |||||| |||||| |||   |||||||||||| |||   ||| |||||||||||||||| ||||||||||||| |||||||| ||    
T  31076342 aacctttggcaaaagggtgcttaatgaatcatggcattgattcaagttaaagaggtgctttctctcatgtgaagagtcatataatgcattataaatgctt 31076441  T
Q  141 ggcatttgaccattagtttgacagagaa------cagaacaacacacaattttggatagaattttgttacattaacaacataattcttcaccattctttt 234  Q
    | ||||||  ||||||||  ||| | ||      || ||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||    
T  31076442 gacatttgggcattagttgaacatacaaaaaccacacaactacacacaattt-ggacagaattttgttacattaacaacataattcttcaccattctatt 31076540  T
Q  235 actctaaatcat 246  Q
    | ||||||||||    
T  31076541 attctaaatcat 31076552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 42 - 246
Target Start/End: Original strand, 31081447 - 31081657
Alignment:
Q  42 aacctgtggcaaaaaggtgct-aatgaaccataatattgattcaagtcaaatgagtgttttctctcatgtgaagggtcatataatgcactataaatgttt 140  Q
    ||||| |||||||| |||||| |||||| |||   |||||||||||| |||   ||| |||||||||||||||| ||||||||||||| |||||||| ||    
T  31081447 aacctttggcaaaagggtgcttaatgaatcatggcattgattcaagttaaagaggtgctttctctcatgtgaagagtcatataatgcattataaatgctt 31081546  T
Q  141 ggcatttgaccattagtttgacagagaa------cagaacaacacacaattttggatagaattttgttacattaacaacataattcttcaccattctttt 234  Q
    | ||||||  ||||||||  ||| | ||      || ||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||    
T  31081547 gacatttgggcattagttgaacatacaaaaaccacacaactacacacaattt-ggacagaattttgttacattaacaacataattcttcaccattctatt 31081645  T
Q  235 actctaaatcat 246  Q
    | ||||||||||    
T  31081646 attctaaatcat 31081657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 76 - 246
Target Start/End: Original strand, 6852927 - 6853102
Alignment:
Q  76 attgattcaagtcaaatgagtgttttctctcatgtgaagggtcatataatgcactataaatgtttggcatttgaccattagtttgacagagaa------c 169  Q
    |||||||||||| |||   ||| |||||||||||||||| |||||||||||||||||||||| ||| ||||||  |||||||| || | | ||      |    
T  6852927 attgattcaagttaaagaggtgctttctctcatgtgaagagtcatataatgcactataaatgcttgacatttgggcattagttggatatacaaaaaccac 6853026  T
Q  170 agaacaacacacaattttggatagaattttgttacattaacaacataattcttcaccattcttttactctaaatcat 246  Q
    | ||| ||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||    
T  6853027 acaactacacacaattt-ggacagaattttgttacattaacaacataattcttcatcattctattattctaaatcat 6853102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 76 - 246
Target Start/End: Original strand, 6858030 - 6858205
Alignment:
Q  76 attgattcaagtcaaatgagtgttttctctcatgtgaagggtcatataatgcactataaatgtttggcatttgaccattagtttgacagagaa------c 169  Q
    |||||||||||| |||   ||| |||||||||||||||| |||||||||||||||||||||| ||| ||||||  |||||||| || | | ||      |    
T  6858030 attgattcaagttaaagaggtgatttctctcatgtgaagagtcatataatgcactataaatgcttgacatttgggcattagttggatatacaaaaaccac 6858129  T
Q  170 agaacaacacacaattttggatagaattttgttacattaacaacataattcttcaccattcttttactctaaatcat 246  Q
    | ||| ||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||    
T  6858130 acaactacacacaattt-ggacagaattttgttacattaacaacataattcttcatcattctattattctaaatcat 6858205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 48 - 246
Target Start/End: Original strand, 5457957 - 5458162
Alignment:
Q  48 tggcaaaaaggtgct-aatgaaccataatattgattcaagtcaaatgagtgttttctctcatgtgaagggtcatataatgcactataaatgtttggcatt 146  Q
    |||||||| |||||| |||||| ||| | |||||||||||| ||||  ||| |||||||||||||||| |||||||||||||||||||||| ||| ||||    
T  5457957 tggcaaaagggtgcttaatgaatcatgacattgattcaagttaaataggtgctttctctcatgtgaagagtcatataatgcactataaatgcttgacatt 5458056  T
Q  147 tgaccattagtttgacagaga-------acagaacaacacacaattttggatagaattttgttacattaacaacataattcttcaccattcttttactct 239  Q
    ||  ||||||||  | | | |       ||| ||| ||||||||  ||||| ||||||||||||||||||||||||||||||||| |||||| ||| |||    
T  5458057 tgggcattagttgaagataaaaaaaaccacacaactacacacaa-cttggacagaattttgttacattaacaacataattcttcatcattctattattct 5458155  T
Q  240 aaatcat 246  Q
    |||||||    
T  5458156 aaatcat 5458162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 42 - 246
Target Start/End: Original strand, 10584798 - 10585008
Alignment:
Q  42 aacctgtggcaaaaaggtgct-aatgaaccataatattgattcaagtcaaatgagtgttttctctcatgtgaagggtcatataatgcactataaatgttt 140  Q
    ||||| |||||||| |||||| |||||| |||   |||||||||||| |||   |||||||||||||||||||| |||||||||||||||||||||| ||    
T  10584798 aacctttggcaaaagggtgcttaatgaatcatggcattgattcaagttaaagaggtgttttctctcatgtgaagagtcatataatgcactataaatgctt 10584897  T
Q  141 ggcatttgaccattagtttgacagaga------acagaacaacacacaattttggatagaattttgttacattaacaacataattcttcaccattctttt 234  Q
    | ||||||  ||||||||  | | | |      ||| ||| |||||||| |||||| ||||||||||||||||||||||||||||| ||| |||||| ||    
T  10584898 gacatttgggcattagttgaaaatacaaaaaccacacaactacacacaa-tttggacagaattttgttacattaacaacataattcctcatcattctatt 10584996  T
Q  235 actctaaatcat 246  Q
    | ||||||||||    
T  10584997 attctaaatcat 10585008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 42 - 246
Target Start/End: Original strand, 1302184 - 1302395
Alignment:
Q  42 aacctgtggcaaaaaggtgct-aatgaaccataatattgattcaagtcaaatgagtgttttctctcatgtgaagggtcatataatgcactataaatgttt 140  Q
    ||||| |||||||| |||||| |||||| |||   |||||||||||| |||   ||| |||||||||||||||| |||||||||||||||||||||| ||    
T  1302184 aacctttggcaaaagggtgcttaatgaatcatggcattgattcaagttaaagaggtgctttctctcatgtgaagagtcatataatgcactataaatgctt 1302283  T
Q  141 ggcatttgaccattagtttgacagagaa-------cagaacaacacacaattttggatagaattttgttacattaacaacataattcttcaccattcttt 233  Q
    | ||||||  ||||||||  | | | ||       || ||| ||||||||||| ||| | |||||||||||||||||||||||||||||||||||||| |    
T  1302284 gacatttgggcattagttgaatatacaaaaaaccacacaactacacacaattt-ggacaaaattttgttacattaacaacataattcttcaccattctat 1302382  T
Q  234 tactctaaatcat 246  Q
    || ||||||||||    
T  1302383 tattctaaatcat 1302395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 76 - 246
Target Start/End: Complemental strand, 8458541 - 8458365
Alignment:
Q  76 attgattcaagtcaaatgagtgttttctctcatgtgaagggtcatataatgcactataaatgtttggcattt-gaccattagtttgacagagaa------ 168  Q
    |||||||||||| |||   |||||||||||||||||||| |||||||||||||||||||||| ||| ||||| |  ||||||||  | | | ||          
T  8458541 attgattcaagttaaagaggtgttttctctcatgtgaagagtcatataatgcactataaatgcttgacattttgggcattagttgaatatacaaaaacca 8458442  T
Q  169 cagaacaacacacaattttggatagaattttgttacattaacaacataattcttcaccattcttttactctaaatcat 246  Q
    || ||| ||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||    
T  8458441 cacaactacacacaattt-ggacagaattttgttacattaacaacataattcttcatcattctattattctaaatcat 8458365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 76 - 246
Target Start/End: Original strand, 10591270 - 10591445
Alignment:
Q  76 attgattcaagtcaaatgagtgttttctctcatgtgaagggtcatataatgcactataaatgtttggcatttgaccattagtttgacagaga------ac 169  Q
    |||||||||||| |||   ||| |||||||||||||||| |||||||||||||||||||||| ||| ||||||  ||||||||  | | | |      ||    
T  10591270 attgattcaagttaaagaggtgctttctctcatgtgaagagtcatataatgcactataaatgcttgacatttgggcattagttgaaaatacaaaaaccac 10591369  T
Q  170 agaacaacacacaattttggatagaattttgttacattaacaacataattcttcaccattcttttactctaaatcat 246  Q
    | ||| |||||||| |||||| ||||||||||||||||||||||||||||| ||| |||||| ||| ||||||||||    
T  10591370 acaactacacacaa-tttggacagaattttgttacattaacaacataattcctcatcattctattattctaaatcat 10591445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 48 - 163
Target Start/End: Complemental strand, 29827661 - 29827546
Alignment:
Q  48 tggcaaaaaggtgct-aatgaaccataatattgattcaagtcaaatgagtgttttctctcatgtgaagggtcatataatgcactataaatgtttggcatt 146  Q
    |||||||| |||||| |||||| ||||| |||||||||||||||| | ||||||||| ||||||||| | |||||||||||| |||||||| ||||||||    
T  29827661 tggcaaaatggtgcttaatgaatcataacattgattcaagtcaaaggggtgttttctatcatgtgaaag-tcatataatgcattataaatgcttggcatt 29827563  T
Q  147 tgaccattagtttgaca 163  Q
    ||  |||||||||||||    
T  29827562 tgggcattagtttgaca 29827546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 99 - 246
Target Start/End: Complemental strand, 33703506 - 33703353
Alignment:
Q  99 tttctctcatgtgaagggtcatataatgcactataaatgtttggcatttgaccattagtttgacagagaa-------cagaacaacacacaattttggat 191  Q
    |||||||||||||||| |||||||||||||||||||||| ||| ||||||  ||||||||  | | | ||       || ||| ||||||||||| |||     
T  33703506 tttctctcatgtgaagagtcatataatgcactataaatgcttgacatttgggcattagttgaatatacaaaaaaccacacaactacacacaattt-ggac 33703408  T
Q  192 agaattttgttacattaacaacataattcttcaccattcttttactctaaatcat 246  Q
    | |||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  33703407 ataattttgttacattaacaacataattcttcaccattctattattctaaatcat 33703353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 42 - 246
Target Start/End: Original strand, 10677991 - 10678203
Alignment:
Q  42 aacctgtggcaaaaaggtgct-aatgaaccataatattgattcaagtcaaatgagtgttttctctcatgtgaagggtca--tataatgcactataaatgt 138  Q
    ||||| |||||||| |||||| |||||| |||   |||||||||||| |||   ||| ||||| |||||||||| ||||  ||||||||||||||||||     
T  10677991 aacctttggcaaaagggtgcttaatgaatcatggcattgattcaagttaaaaaggtgctttctttcatgtgaagagtcacatataatgcactataaatgc 10678090  T
Q  139 ttggcatttgaccattagtttgacagagaa------cagaacaacacacaattttggatagaattttgttacattaacaacataattcttcaccattctt 232  Q
    ||| ||||||  ||||||||  | | | ||      || ||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||     
T  10678091 ttgacatttgggcattagttgaaaatacaaaaaccacacaactacacacaattt-ggacagaattttgttacattaacaacataattcttcaccattcta 10678189  T
Q  233 ttactctaaatcat 246  Q
    ||| ||||||||||    
T  10678190 ttattctaaatcat 10678203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 95 - 148
Target Start/End: Complemental strand, 20891237 - 20891184
Alignment:
Q  95 gtgttttctctcatgtgaagggtcatataatgcactataaatgtttggcatttg 148  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  20891237 gtgttttctctcatgtgaagggtcatataatgcactataaatgcttggcatttg 20891184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 95 - 148
Target Start/End: Original strand, 18024174 - 18024227
Alignment:
Q  95 gtgttttctctcatgtgaagggtcatataatgcactataaatgtttggcatttg 148  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  18024174 gtgttttctctcatgtgaagggtcatataatgcactataaatgcttgacatttg 18024227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 194 - 250
Target Start/End: Original strand, 18024246 - 18024302
Alignment:
Q  194 aattttgttacattaacaacataattcttcaccattcttttactctaaatcattcat 250  Q
    |||||||||||||||||||||||||||| |  |||||| ||||||||||||||||||    
T  18024246 aattttgttacattaacaacataattctccctcattctcttactctaaatcattcat 18024302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 193 - 246
Target Start/End: Original strand, 3187551 - 3187604
Alignment:
Q  193 gaattttgttacattaacaacataattcttcaccattcttttactctaaatcat 246  Q
    ||||||||| ||||||||||||||||||| |  |||||| ||||||||||||||    
T  3187551 gaattttgtgacattaacaacataattctccctcattctcttactctaaatcat 3187604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 250
Target Start/End: Complemental strand, 29827532 - 29827474
Alignment:
Q  192 agaattttgttacattaacaacataattcttcaccattcttttactctaaatcattcat 250  Q
    ||||||||||| |||||| ||| ||||||| |  |||||| ||||||||||||||||||    
T  29827532 agaattttgttgcattaataacctaattctccctcattctcttactctaaatcattcat 29827474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 93; Significance: 2e-45; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 62 - 246
Target Start/End: Complemental strand, 2023196 - 2023018
Alignment:
Q  62 taatgaaccataatattgattcaagtcaaatgagtgttttctctcatgtgaagggtcatataatgcactataaatgtttggcatttgaccattagtttga 161  Q
    ||||||| ||||| |||||||||||||||| | ||| |||||||||||||||| |||||||||||||||||||||| ||| ||| ||  |||||||| ||    
T  2023196 taatgaatcataacattgattcaagtcaaagg-gtgctttctctcatgtgaagagtcatataatgcactataaatgcttgacatatgggcattagttgga 2023098  T
Q  162 cagagaacagaacaacacacaattttggatagaattttgttacattaacaacataattcttcaccattcttttactctaaatcat 246  Q
    ||     || ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  2023097 ca-----cacaacaacacataattttggacagaattttgttacattaacaacataattcttcaccattctcttattctaaatcat 2023018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 42 - 246
Target Start/End: Original strand, 13556244 - 13556455
Alignment:
Q  42 aacctgtggcaaaaaggtgct-aatgaaccataatattgattcaagtcaaatgagtgttttctctcatgtgaagggtcatataatgcactataaatgttt 140  Q
    ||||| ||||||||||||||| |||||| ||||  |||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||| ||    
T  13556244 aacctttggcaaaaaggtgcttaatgaatcatagcattgattcaagtcaaatgggtgctttctctcatgtgaagagtcatataatgcactataaatgctt 13556343  T
Q  141 ggcatttgaccattagtttgac-------agagaacagaacaacacacaattttggatagaattttgttacattaacaacataattcttcaccattcttt 233  Q
    | ||||||  |||||||| |||       | || ||| ||| |||||||| |||||| |||| |||||||||||||||||||||||||||| |||||| |    
T  13556344 gacatttgggcattagttggacatacagaaaaggacacaactacacacaa-tttggacagaagtttgttacattaacaacataattcttcatcattctct 13556442  T
Q  234 tactctaaatcat 246  Q
    || ||||||||||    
T  13556443 tattctaaatcat 13556455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 42 - 246
Target Start/End: Original strand, 9877479 - 9877689
Alignment:
Q  42 aacctgtggcaaaaaggtgct-aatgaaccataatattgattcaagtcaaatgagtgttttctctcatgtgaagggtcatataatgcactataaatgttt 140  Q
    ||||| |||||||| |||||| |||||| |||   |||||||||||| ||||  ||| |||||||||||||||| |||||||||||||||||||||| ||    
T  9877479 aacctttggcaaaagggtgcttaatgaatcatggcattgattcaagttaaataggtgctttctctcatgtgaagagtcatataatgcactataaatgctt 9877578  T
Q  141 ggcatttgaccattagtttgacagagaa------cagaacaacacacaattttggatagaattttgttacattaacaacataattcttcaccattctttt 234  Q
    | ||||||  ||||||||  | | | ||      || ||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||    
T  9877579 gacatttgggcattagttgaatatacaaaaaccacacaactacacacaattt-ggacagaattttgttacattaacaacataattcttcaccattctatt 9877677  T
Q  235 actctaaatcat 246  Q
    | ||||||||||    
T  9877678 attctaaatcat 9877689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 42 - 246
Target Start/End: Complemental strand, 39909222 - 39909012
Alignment:
Q  42 aacctgtggcaaaaaggtgct-aatgaaccataatattgattcaagtcaaatgagtgttttctctcatgtgaagggtcatataatgcactataaatgttt 140  Q
    ||||| |||||||| |||||| |||||| |||   |||||||||||| ||||  ||| |||||||||||||||| |||||||||||||||||||||| ||    
T  39909222 aacctttggcaaaagggtgcttaatgaatcatggcattgattcaagttaaataggtgctttctctcatgtgaagagtcatataatgcactataaatgctt 39909123  T
Q  141 ggcatttgaccattagtttgacagagaa------cagaacaacacacaattttggatagaattttgttacattaacaacataattcttcaccattctttt 234  Q
    | ||||||  ||||||||  | | | ||      || ||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||    
T  39909122 gacatttgggcattagttgaaaaaacaaaaatcacacaactacacacaattt-ggacagaattttgttacattaacaacataattcttcaccattctatt 39909024  T
Q  235 actctaaatcat 246  Q
    | ||||||||||    
T  39909023 attctaaatcat 39909012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 42 - 246
Target Start/End: Original strand, 9872364 - 9872574
Alignment:
Q  42 aacctgtggcaaaaaggtgct-aatgaaccataatattgattcaagtcaaatgagtgttttctctcatgtgaagggtcatataatgcactataaatgttt 140  Q
    ||||| |||||||| |||||| |||||| |||   |||||||||||| ||||  ||| |||||||||||||||| |||||||||||||||||||||| ||    
T  9872364 aacctttggcaaaagggtgcttaatgaatcatggcattgattcaagttaaataggtgctttctctcatgtgaagagtcatataatgcactataaatgctt 9872463  T
Q  141 ggcatttgaccattagtttgacagaga------acagaacaacacacaattttggatagaattttgttacattaacaacataattcttcaccattctttt 234  Q
    | ||||||  ||||||||  | | | |      ||| ||| |||||||| |||||| |||||||||||||||||||||||||||||||||| ||||| ||    
T  9872464 gacatttgggcattagttgaatatacaaaaaccacacaactacacacaa-tttggacagaattttgttacattaacaacataattcttcacaattctatt 9872562  T
Q  235 actctaaatcat 246  Q
    | ||||||||||    
T  9872563 attctaaatcat 9872574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 62 - 246
Target Start/End: Original strand, 35368862 - 35369041
Alignment:
Q  62 taatgaaccataatattgattcaagtcaaatgagtgttttctctcatgtgaagggtcatataatgcactataaatgtttggcatttgaccattagtttga 161  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| ||| ||||||  ||||| |||||    
T  35368862 taatgaatcataacattgattcaagtcaaatgagtgttttctctcatgtgaaaagtcatataatgcactataaatgcttgacatttgggcattaatttga 35368961  T
Q  162 cagagaacagaacaacacacaattttggatagaattttgttacattaacaacataattcttcaccattcttttactctaaatcat 246  Q
    |     ||| ||||||||||||        ||||||||||| ||| || |||||||||||||  |||||| ||||||||||||||    
T  35368962 c-----acacaacaacacacaacaaaaacaagaattttgttgcatcaaaaacataattcttcctcattctcttactctaaatcat 35369041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 76 - 246
Target Start/End: Complemental strand, 39904074 - 39903899
Alignment:
Q  76 attgattcaagtcaaatgagtgttttctctcatgtgaagggtcatataatgcactataaatgtttggcatttgaccattagtttgacagagaa------c 169  Q
    |||||||||||| ||||  ||| |||||||||||||||| |||||||||||||||||||||| ||| |||||   ||||||||  | | | ||      |    
T  39904074 attgattcaagttaaataggtgctttctctcatgtgaagagtcatataatgcactataaatgcttgacattttggcattagttgaaaaaacaaaaaccac 39903975  T
Q  170 agaacaacacacaattttggatagaattttgttacattaacaacataattcttcaccattcttttactctaaatcat 246  Q
    | ||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  39903974 acaactacacacaattt-ggacagaattttgttacattaacaacataattcttcaccattctattattctaaatcat 39903899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 53 - 145
Target Start/End: Original strand, 43540733 - 43540824
Alignment:
Q  53 aaaaggtgct-aatgaaccataatattgattcaagtcaaatgagtgttttctctcatgtgaagggtcatataatgcactataaatgtttggcat 145  Q
    |||||||||| |||||||||||| ||||| ||||||||||||||||||  |||||||||||||||||||||||||||||||||||  |||||||    
T  43540733 aaaaggtgcttaatgaaccataacattgactcaagtcaaatgagtgtt--ctctcatgtgaagggtcatataatgcactataaatacttggcat 43540824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 185 - 246
Target Start/End: Complemental strand, 4555768 - 4555707
Alignment:
Q  185 tttggatagaattttgttacattaacaacataattcttcaccattcttttactctaaatcat 246  Q
    |||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  4555768 tttggacacaattttgttacattaacaacataattcttcaccattctattactctaaatcat 4555707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 62 - 146
Target Start/End: Original strand, 43402094 - 43402178
Alignment:
Q  62 taatgaaccataatattgattcaagtcaaatgagtgttttctctcatgtgaagggtcatataatgcactataaatgtttggcatt 146  Q
    ||||||||||||| |||||||| | ||||||   |||||||| |||| |||||| ||||||||||||||||||||||||| ||||    
T  43402094 taatgaaccataacattgattcgaatcaaattgatgttttctttcatatgaaggatcatataatgcactataaatgtttgtcatt 43402178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 65 - 139
Target Start/End: Complemental strand, 43379623 - 43379554
Alignment:
Q  65 tgaaccataatattgattcaagtcaaatgagtgttttctctcatgtgaagggtcatataatgcactataaatgtt 139  Q
    |||| ||||| |||||||||||| |||||||||||||     |||||||||||||||||||||||||||||||||    
T  43379623 tgaatcataacattgattcaagtaaaatgagtgtttt-----atgtgaagggtcatataatgcactataaatgtt 43379554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 194 - 246
Target Start/End: Original strand, 43540857 - 43540909
Alignment:
Q  194 aattttgttacattaacaacataattcttcaccattcttttactctaaatcat 246  Q
    ||||||||||||||||||||||| |||| || |||||| ||||||||||||||    
T  43540857 aattttgttacattaacaacatagttctccatcattctcttactctaaatcat 43540909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 95 - 148
Target Start/End: Complemental strand, 4555830 - 4555777
Alignment:
Q  95 gtgttttctctcatgtgaagggtcatataatgcactataaatgtttggcatttg 148  Q
    |||||||||||||||| ||  |||||||||||||||||||||| ||| ||||||    
T  4555830 gtgttttctctcatgttaatagtcatataatgcactataaatgcttgacatttg 4555777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 206 - 246
Target Start/End: Complemental strand, 25184186 - 25184146
Alignment:
Q  206 ttaacaacataattcttcaccattcttttactctaaatcat 246  Q
    ||||||||||| |||||||||||||| ||||||||||||||    
T  25184186 ttaacaacatatttcttcaccattctcttactctaaatcat 25184146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 92; Significance: 8e-45; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 62 - 246
Target Start/End: Original strand, 10186542 - 10186729
Alignment:
Q  62 taatgaaccataatattgattcaagtcaaatgagtgttttctctcatgtgaagggtcatataatgcactataaatgtttggcatttgaccattagtttg- 160  Q
    ||||||||||||  |||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||  ||||| ||||     
T  10186542 taatgaaccatagcattggttcaagtcaaatgggtgctttctctcatgtgaagggtcatataatgcactataaatgtttgacatttgggcattaatttga 10186641  T
Q  161 acagagaa-cagaacaac-acacaattttggatagaattttgttacattaacaacataattcttcaccattcttttactctaaatcat 246  Q
    ||| ||||  | || ||| ||| ||||||||| |||||||||||||||||||||||||||||| || |||||| ||||||||||||||    
T  10186642 acacagaagaacaataacaacataattttggacagaattttgttacattaacaacataattctccatcattctcttactctaaatcat 10186729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 42 - 243
Target Start/End: Complemental strand, 43359007 - 43358810
Alignment:
Q  42 aacctgtggcaaaaaggtgct-aatgaaccataatattgattcaagtcaaatgagtgttttctctcatgtgaagggtcatataatgcactataaatgttt 140  Q
    ||||| |||||||  |||||| |||||| ||||  |||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||| ||    
T  43359007 aacctttggcaaaggggtgcttaatgaatcatagcattgattcaagtcaaatgagtgctttctctcatgtgaagagtcctataatgcactataaatgctt 43358908  T
Q  141 ggcatttgaccattagtttgacagagaacagaacaacacacaattttggatagaattttgttacattaacaacataattcttcaccattcttttactcta 240  Q
    ||||||||  |||||||| |||     |||  ||||||||||||||||||  ||||||||||||||||||||||||||||| |  |||||| ||||||||    
T  43358907 ggcatttgggcattagttggac-----acactacaacacacaattttggactgaattttgttacattaacaacataattctccctcattctcttactcta 43358813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 62 - 246
Target Start/End: Original strand, 44523992 - 44524172
Alignment:
Q  62 taatgaaccataatattgattcaagtcaaatgagtgttttctctcat--gtgaagggtcatataatgcactataaatgtttggcatttgaccattagttt 159  Q
    ||||||||||||| |||||||||||||||||| |||||||| |||||  ||||||||||||||||||||||||||||||||| ||||||  ||||| |||    
T  44523992 taatgaaccataacattgattcaagtcaaatgggtgttttccctcatatgtgaagggtcatataatgcactataaatgtttgacatttgggcattaattt 44524091  T
Q  160 gacagagaacagaacaacacacaattttggatagaattttgttacattaacaacataattcttcaccattcttttactctaaatcat 246  Q
    ||   | |||  |||||||||||| |||| | ||||| ||||| |||||||||||||||||| || |||||| ||||| ||||||||    
T  44524092 ga---acaac--aacaacacacaa-tttgaacagaatattgttgcattaacaacataattctccatcattctcttactttaaatcat 44524172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 42 - 246
Target Start/End: Complemental strand, 28574561 - 28574351
Alignment:
Q  42 aacctgtggcaaaaaggtgct-aatgaaccataatattgattcaagtcaaatgagtgttttctctcatgtgaagggtcatataatgcactataaatgttt 140  Q
    ||||| |||||||| |||||| |||||| |||   |||||||||||| ||||  |||||||||||||||||||| |||||||||||||||||||||| ||    
T  28574561 aacctttggcaaaagggtgcttaatgaatcatggcattgattcaagttaaataggtgttttctctcatgtgaagagtcatataatgcactataaatgctt 28574462  T
Q  141 ggcatttgaccattagtttgacagaga------acagaacaacacacaattttggatagaattttgttacattaacaacataattcttcaccattctttt 234  Q
    | ||||||  ||||||||  | | | |      ||| ||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||    
T  28574461 gacatttgggcattagttgaatatacaaaaaccacacaactacacacaa-tttggacagaattttgttacattaacaacataattcttcaccattctatt 28574363  T
Q  235 actctaaatcat 246  Q
    | ||||||||||    
T  28574362 attctaaatcat 28574351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 42 - 246
Target Start/End: Complemental strand, 28598573 - 28598363
Alignment:
Q  42 aacctgtggcaaaaaggtgct-aatgaaccataatattgattcaagtcaaatgagtgttttctctcatgtgaagggtcatataatgcactataaatgttt 140  Q
    ||||| |||||||| |||||| |||||| |||   |||||||||||| ||||  |||||||||||||||||||| |||||||||||||||||||||| ||    
T  28598573 aacctttggcaaaagggtgcttaatgaatcatggcattgattcaagttaaataggtgttttctctcatgtgaagagtcatataatgcactataaatgctt 28598474  T
Q  141 ggcatttgaccattagtttgacagaga------acagaacaacacacaattttggatagaattttgttacattaacaacataattcttcaccattctttt 234  Q
    | ||||||  ||||||||  | | | |      ||| ||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||    
T  28598473 gacatttgggcattagttgaatatacaaaaaccacacaactacacacaa-tttggacagaattttgttacattaacaacataattcttcaccattctatt 28598375  T
Q  235 actctaaatcat 246  Q
    | ||||||||||    
T  28598374 attctaaatcat 28598363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 42 - 246
Target Start/End: Complemental strand, 3468332 - 3468121
Alignment:
Q  42 aacctgtggcaaaaaggtgct-aatgaaccataatattgattcaagtcaaatgagtgttttctctcatgtgaagggtcatataatgcactataaatgttt 140  Q
    ||||| |||||||| |||||| |||||| ||| | |||||||||||| |||   ||| |||||||||||||||| |||||||||||||||||||||| ||    
T  3468332 aacctttggcaaaagggtgcttaatgaatcatgacattgattcaagttaaagatgtgctttctctcatgtgaagagtcatataatgcactataaatgctt 3468233  T
Q  141 ggcatttgaccattagtttgacagagaa-------cagaacaacacacaattttggatagaattttgttacattaacaacataattcttcaccattcttt 233  Q
    | ||||||  ||||||||  | | | ||       || ||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |    
T  3468232 gacatttgggcattagttgaagatacaaaaaaccacacaactacacacaattt-ggacagaattttgttacattaacaacataattcttcaccattctat 3468134  T
Q  234 tactctaaatcat 246  Q
    || ||||||||||    
T  3468133 tattctaaatcat 3468121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 42 - 246
Target Start/End: Complemental strand, 19311077 - 19310878
Alignment:
Q  42 aacctgtggcaaaaaggtgct-aatgaaccataatattgattcaagtcaaatgagtgttttctctcatgtgaagggtcatataatgcactataaatgttt 140  Q
    ||||| ||| |||| |||||| ||||||| |||| |||||||||||||||| | ||| |||||||||||||||||||||| |||||||||||||||||||    
T  19311077 aacctttggtaaaagggtgcttaatgaactataacattgattcaagtcaaaggggtgctttctctcatgtgaagggtcatgtaatgcactataaatgttt 19310978  T
Q  141 ggcatttgaccattagtttgacagagaacagaacaacacacaattttggatagaattttgttacattaacaacataattcttcaccattcttttactcta 240  Q
    | ||||||  ||||| ||||||  | || || |    ||| ||||||||| ||| ||||||||||||||||| |||||||| |  |||||| ||||| ||    
T  19310977 gacatttgggcattaatttgac--acaaaagca----acataattttggacagagttttgttacattaacaatataattctccctcattctcttactata 19310884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 42 - 170
Target Start/End: Original strand, 21431621 - 21431751
Alignment:
Q  42 aacctgtggcaaaaaggtgct-aatgaaccataatattgattcaagtcaaatgag-tgttttctctcatgtgaagggtcatataatgcactataaatgtt 139  Q
    ||||| |||||||| |||||| |||||||||||| ||||||| |||||||| | | || ||||||||||||||||||||||||||||||||||||||| |    
T  21431621 aacctttggcaaaagggtgcttaatgaaccataacattgatttaagtcaaagggggtgctttctctcatgtgaagggtcatataatgcactataaatgct 21431720  T
Q  140 tggcatttgaccattagtttgacagagaaca 170  Q
    || ||||||  |||||||| |||||||||||    
T  21431721 tgacatttgggcattagttggacagagaaca 21431751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 62 - 146
Target Start/End: Complemental strand, 13654552 - 13654468
Alignment:
Q  62 taatgaaccataatattgattcaagtcaaatgagtgttttctctcatgtgaagggtcatataatgcactataaatgtttggcatt 146  Q
    ||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  13654552 taatgaaccataacattgattcaagtcaaaggggtgttttctctcatgtgaagggtcatataatgcactataaatacttggcatt 13654468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 62 - 148
Target Start/End: Complemental strand, 16051428 - 16051342
Alignment:
Q  62 taatgaaccataatattgattcaagtcaaatgagtgttttctctcatgtgaagggtcatataatgcactataaatgtttggcatttg 148  Q
    ||||||||||||  |||||||||||||||| | |||||||| |||||||||| ||||||||||||||||||||||||||| ||||||    
T  16051428 taatgaaccatatcattgattcaagtcaaaagggtgttttcactcatgtgaatggtcatataatgcactataaatgtttgacatttg 16051342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 176 - 246
Target Start/End: Complemental strand, 3465596 - 3465527
Alignment:
Q  176 acacacaattttggatagaattttgttacattaacaacataattcttcaccattcttttactctaaatcat 246  Q
    ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  3465596 acacacaattt-ggacagaattttgttacattaacaacataattcttcaccattctattattctaaatcat 3465527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 62 - 123
Target Start/End: Original strand, 35653214 - 35653275
Alignment:
Q  62 taatgaaccataatattgattcaagtcaaatgagtgttttctctcatgtgaagggtcatata 123  Q
    ||||||||||||  |||||||||| |||||||||||||||||||||||||||||||||||||    
T  35653214 taatgaaccatatcattgattcaattcaaatgagtgttttctctcatgtgaagggtcatata 35653275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 88 - 148
Target Start/End: Original strand, 17414555 - 17414615
Alignment:
Q  88 caaatgagtgttttctctcatgtgaagggtcatataatgcactataaatgtttggcatttg 148  Q
    |||||| ||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  17414555 caaatgggtggtttctctcatgtgaatggtcatataatgcactataaatgcttggcatttg 17414615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 176 - 221
Target Start/End: Complemental strand, 13654461 - 13654416
Alignment:
Q  176 acacacaattttggatagaattttgttacattaacaacataattct 221  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  13654461 acacacaattttggatagaattttgttgcattaacaacataattct 13654416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 192 - 246
Target Start/End: Complemental strand, 35626280 - 35626226
Alignment:
Q  192 agaattttgttacattaacaacataattcttcaccattcttttactctaaatcat 246  Q
    |||||||||||||||||||||||||||||| |  |||||| ||||||||||||||    
T  35626280 agaattttgttacattaacaacataattctccctcattctcttactctaaatcat 35626226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 62 - 163
Target Start/End: Complemental strand, 1188054 - 1187953
Alignment:
Q  62 taatgaaccataatattgattcaagtcaaatgagtgttttctctcatgtgaagggtcatataatgcactataaatgtttggcatttgaccattagtttga 161  Q
    ||||||||||||| ||| |||||||||||| | |||||| |||||||||| || |||||||||| ||  |||| || ||| ||||||  ||||| |||||    
T  1188054 taatgaaccataacattaattcaagtcaaaggggtgtttactctcatgtgtagagtcatataatccataataagtgcttgccatttgggcattaatttga 1187955  T
Q  162 ca 163  Q
    ||    
T  1187954 ca 1187953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 193 - 246
Target Start/End: Original strand, 17414633 - 17414686
Alignment:
Q  193 gaattttgttacattaacaacataattcttcaccattcttttactctaaatcat 246  Q
    ||||||||||||||||||||||||||||| |  |||||| ||||||||||||||    
T  17414633 gaattttgttacattaacaacataattctccctcattctcttactctaaatcat 17414686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 95 - 136
Target Start/End: Original strand, 3701492 - 3701533
Alignment:
Q  95 gtgttttctctcatgtgaagggtcatataatgcactataaat 136  Q
    |||||||||||||||||||| |||| ||||||||||||||||    
T  3701492 gtgttttctctcatgtgaagagtcacataatgcactataaat 3701533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 87
Target Start/End: Complemental strand, 43359059 - 43359020
Alignment:
Q  48 tggcaaaaaggtgctaatgaaccataatattgattcaagt 87  Q
    |||||||| |||||||||||||||||| ||||||||||||    
T  43359059 tggcaaaagggtgctaatgaaccataacattgattcaagt 43359020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 246
Target Start/End: Complemental strand, 1187935 - 1187882
Alignment:
Q  192 agaattttgttacattaacaacataattcttcaccattcttttactctaaatcat 246  Q
    |||||||||||||||||||||||||| || ||  |||||| ||||||||||||||    
T  1187935 agaattttgttacattaacaacataaatc-tcctcattctcttactctaaatcat 1187882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 137
Target Start/End: Complemental strand, 10185874 - 10185836
Alignment:
Q  99 tttctctcatgtgaagggtcatataatgcactataaatg 137  Q
    |||||||||| |||| |||||||||||||||||||||||    
T  10185874 tttctctcatatgaatggtcatataatgcactataaatg 10185836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 246
Target Start/End: Original strand, 21431768 - 21431822
Alignment:
Q  192 agaattttgttacattaacaacataattcttcaccattcttttactctaaatcat 246  Q
    ||||||||||| |||||||||||||||||| |  |||||| ||| ||||||||||    
T  21431768 agaattttgttgcattaacaacataattctccctcattctcttaatctaaatcat 21431822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 91; Significance: 3e-44; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 42 - 246
Target Start/End: Original strand, 43956790 - 43956999
Alignment:
Q  42 aacctgtggcaaaaaggtgct-aatgaaccataatattgattcaagtcaaatgagtgttttctctcatgtgaagggtcatataatgcactataaatgttt 140  Q
    ||||| ||||||||||||||| |||||| ||||  |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| ||    
T  43956790 aacctttggcaaaaaggtgcttaatgaatcatagcattgattcaagtcaaatgagtgctttctctcatgtgaagagtcatataatgcactataaatgctt 43956889  T
Q  141 ggcatttgaccattagtttgacagaga-----acagaacaacacacaattttggatagaattttgttacattaacaacataattcttcaccattctttta 235  Q
    | ||||||  |||||||| |||| | |     ||| ||| |||||||| |||||| | ||||||||| ||||||||||||||||||||| |||||| |||    
T  43956890 gacatttgggcattagttggacatacaaaaacacacaactacacacaa-tttggacataattttgttgcattaacaacataattcttcatcattctctta 43956988  T
Q  236 ctctaaatcat 246  Q
     ||||||||||    
T  43956989 ttctaaatcat 43956999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 42 - 246
Target Start/End: Original strand, 14314851 - 14315061
Alignment:
Q  42 aacctgtggcaaaaaggtgct-aatgaaccataatattgattcaagtcaaatgagtgttttctctcatgtgaagggtcatataatgcactataaatgttt 140  Q
    ||||| |||||||| |||||| |||||| |||   |||||||||||| ||||  |||||||||||||||||||| |||||||||||||||||||||| ||    
T  14314851 aacctttggcaaaagggtgcttaatgaatcatggcattgattcaagttaaataggtgttttctctcatgtgaagagtcatataatgcactataaatgctt 14314950  T
Q  141 ggcatttgaccattagtttgacagaga------acagaacaacacacaattttggatagaattttgttacattaacaacataattcttcaccattctttt 234  Q
    | ||||||  ||||||||  | ||| |      ||| ||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||    
T  14314951 gacatttgggcattagttgaagagacaaaaaccacacaactacacacaa-tttggacagaattttgttacattaacaacataattcttcaccattctatt 14315049  T
Q  235 actctaaatcat 246  Q
    | ||||||||||    
T  14315050 attctaaatcat 14315061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 42 - 246
Target Start/End: Original strand, 14318555 - 14318765
Alignment:
Q  42 aacctgtggcaaaaaggtgct-aatgaaccataatattgattcaagtcaaatgagtgttttctctcatgtgaagggtcatataatgcactataaatgttt 140  Q
    ||||| |||||||| |||||| |||||| |||   |||||||||||| ||||  |||||||||||||||||||| |||||||||||||||||||||| ||    
T  14318555 aacctttggcaaaagggtgcttaatgaatcatggcattgattcaagttaaataggtgttttctctcatgtgaagagtcatataatgcactataaatgctt 14318654  T
Q  141 ggcatttgaccattagtttgacagaga------acagaacaacacacaattttggatagaattttgttacattaacaacataattcttcaccattctttt 234  Q
    | ||||||  ||||||||  | ||| |      ||| ||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||    
T  14318655 gacatttgggcattagttgaagagacaaaaaccacacaactacacacaa-tttggacagaattttgttacattaacaacataattcttcaccattctatt 14318753  T
Q  235 actctaaatcat 246  Q
    | ||||||||||    
T  14318754 attctaaatcat 14318765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 42 - 246
Target Start/End: Original strand, 18494117 - 18494326
Alignment:
Q  42 aacctgtggcaaaaaggtgct-aatgaaccataatattgattcaagtcaaatgagtgttttctctcatgtgaagggtcatataatgcactataaatgttt 140  Q
    ||||| |||||||| |||||| |||||| ||| | |||||||||||| ||| | ||| |||||||||||||||| |||||||||||||||||||||| ||    
T  18494117 aacctttggcaaaagggtgcttaatgaatcatgacattgattcaagttaaaag-gtgctttctctcatgtgaagagtcatataatgcactataaatgctt 18494215  T
Q  141 ggcatttgaccattagtttgacagagaa------cagaacaacacacaattttggatagaattttgttacattaacaacataattcttcaccattctttt 234  Q
    | ||||||  ||||||||  | | | ||      || ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||    
T  18494216 gacatttgggcattagttgaagatacaaaaaccacacaactacacacaattt-ggatagaattttgttacattaacaacataattcttcaccattctatt 18494314  T
Q  235 actctaaatcat 246  Q
    | ||||||||||    
T  18494315 attctaaatcat 18494326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 62 - 246
Target Start/End: Original strand, 25953136 - 25953309
Alignment:
Q  62 taatgaaccataatattgattcaagtcaaatgagtgttttctctcatgtgaagggtcatataatgcactataaatgtttggcatttgaccattagtttga 161  Q
    ||||||||||||| ||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||       | | || ||    
T  25953136 taatgaaccataaaattgatttaagtcaaatgggtgttttctctcatgtgaatggtcatataatgcactataaatgtttggcat-------taatttgga 25953228  T
Q  162 cagagaacagaacaacacacaattttggatagaattttgttacattaacaacataattcttcaccattcttttactctaaatcat 246  Q
    || | |  | ||||  ||||||||||||| |||||||||||||||||||||||||||||| || ||||||  |||||||||||||    
T  25953229 caaaca--ataaca--acacaattttggacagaattttgttacattaacaacataattctccatcattctcatactctaaatcat 25953309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 42 - 246
Target Start/End: Original strand, 26981815 - 26982026
Alignment:
Q  42 aacctgtggcaaaaaggtgct-aatgaaccataatattgattcaagtcaaatgagtgttttctctcatgtgaagggtcatataatgcactataaatgttt 140  Q
    ||||| |||||||| |||||| |||||| |||   |||||||||||| |||   ||| |||||||||||||||| |||||||||||||||||||||||||    
T  26981815 aacctttggcaaaagggtgcttaatgaatcatggcattgattcaagttaaagaggtgctttctctcatgtgaagagtcatataatgcactataaatgttt 26981914  T
Q  141 ggcatttgaccattagtttgacagagaa-------cagaacaacacacaattttggatagaattttgttacattaacaacataattcttcaccattcttt 233  Q
    | ||||||  ||||||||  | | | ||       || ||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |    
T  26981915 gacatttgggcattagttgaatatacaaaaaaccacacaactacacacaattt-ggacagaattttgttacattaacaacataattcttcaccattctat 26982013  T
Q  234 tactctaaatcat 246  Q
    || ||||||||||    
T  26982014 tattctaaatcat 26982026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 42 - 246
Target Start/End: Original strand, 10340907 - 10341107
Alignment:
Q  42 aacctgtggcaaaaaggtgct-aatgaaccataatattgattcaagtcaaatgagtgttttctctcatgtgaagggtcatataatgcactataaatgttt 140  Q
    ||||| || ||||| |||||| |||||| ||||  ||||||||||||||||   ||| ||| |||||||||||| |||||||||||||| ||||||| ||    
T  10340907 aacctttgacaaaagggtgcttaatgaatcatagcattgattcaagtcaaagaggtgctttttctcatgtgaagagtcatataatgcaccataaatgctt 10341006  T
Q  141 ggcatttgaccattagtttgacagagaacagaacaacacacaattttggatagaattttgttacattaacaacataattcttcaccattcttttactcta 240  Q
    ||||||||  |||||||| |||     | | || |||| ||||||||||| ||||||||||| |||||||||||||||||| |  |||||| ||||||||    
T  10341007 ggcatttgggcattagttggac-----atataaaaacatacaattttggacagaattttgttgcattaacaacataattctccctcattctcttactcta 10341101  T
Q  241 aatcat 246  Q
    ||||||    
T  10341102 aatcat 10341107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 42 - 246
Target Start/End: Original strand, 26986929 - 26987139
Alignment:
Q  42 aacctgtggcaaaaaggtgct-aatgaaccataatattgattcaagtcaaatgagtgttttctctcatgtgaagggtcatataatgcactataaatgttt 140  Q
    ||||| |||||||| |||||| |||||| |||   |||||||||||| |||   ||| |||||||||||||||| |||||||||||||||||||||| ||    
T  26986929 aacctttggcaaaagggtgcttaatgaatcatggcattgattcaagttaaagaggtgctttctctcatgtgaagagtcatataatgcactataaatgctt 26987028  T
Q  141 ggcatttgaccattagtttgacagagaa------cagaacaacacacaattttggatagaattttgttacattaacaacataattcttcaccattctttt 234  Q
    | ||||||  ||||||||  | | | ||      || ||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||    
T  26987029 gacatttgggcattagttgaatatacaaaaaccacacaactacacacaattt-ggacagaattttgttacattaacaacataattcttcaccattctatt 26987127  T
Q  235 actctaaatcat 246  Q
    | ||||||||||    
T  26987128 attctaaatcat 26987139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 42 - 246
Target Start/End: Complemental strand, 34108495 - 34108283
Alignment:
Q  42 aacctgtggcaaaaaggtgct-aatgaaccataatattgattcaagtcaaatgagtgttttctctcatgtgaagggtcatataatgcactataaatgttt 140  Q
    ||||| |||||||| |||||| |||||| ||| | |||||||||||| |||   ||| |||||||||||||||| |||||||||||||||||||||| ||    
T  34108495 aacctttggcaaaagggtgcttaatgaatcatgacattgattcaagttaaagaggtgctttctctcatgtgaagagtcatataatgcactataaatgctt 34108396  T
Q  141 ggcatttgaccattagtttgacagaga--------acagaacaacacacaattttggatagaattttgttacattaacaacataattcttcaccattctt 232  Q
    | ||||||  ||||||||  | | | |        ||| ||| ||||||||  ||||| ||||||||||||||||||||||||||||||||| ||||||     
T  34108395 gacatttgggcattagttgaatatatacaaaaaccacacaactacacacaa-cttggacagaattttgttacattaacaacataattcttcatcattcta 34108297  T
Q  233 ttactctaaatcat 246  Q
    ||| ||||||||||    
T  34108296 ttattctaaatcat 34108283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 42 - 147
Target Start/End: Original strand, 18608590 - 18608695
Alignment:
Q  42 aacctgtggcaaaaaggtgct-aatgaaccataatattgattcaagtcaaatgagtgttttctctcatgtgaagggtcatataatgcactataaatgttt 140  Q
    ||||| |||||||  |||||| |||||||||||| |||||||||||| ||| | ||||||||||||||||||| ||||||||||||||||| ||||||||    
T  18608590 aacctttggcaaaggggtgcttaatgaaccataacattgattcaagttaaaggggtgttttctctcatgtgaa-ggtcatataatgcactacaaatgttt 18608688  T
Q  141 ggcattt 147  Q
    |||||||    
T  18608689 ggcattt 18608695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 62 - 148
Target Start/End: Complemental strand, 1782061 - 1781975
Alignment:
Q  62 taatgaaccataatattgattcaagtcaaatgagtgttttctctcatgtgaagggtcatataatgcactataaatgtttggcatttg 148  Q
    ||||||||||||| ||||||||||||||||  ||| |||||||||||||||| |||| |||| ||||||||||||||||| ||||||    
T  1782061 taatgaaccataacattgattcaagtcaaaatagtattttctctcatgtgaaaggtcgtatactgcactataaatgtttgacatttg 1781975  T

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Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 192 - 246
Target Start/End: Original strand, 18608724 - 18608778
Alignment:
Q  192 agaattttgttacattaacaacataattcttcaccattcttttactctaaatcat 246  Q
    |||||||||||||||||||||||||||||| |  |||||| ||||||||||||||    
T  18608724 agaattttgttacattaacaacataattctccctcattctcttactctaaatcat 18608778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 62 - 148
Target Start/End: Original strand, 5440261 - 5440347
Alignment:
Q  62 taatgaaccataatattgattcaagtcaaatgagtgttttctctcatgtgaagggtcatataatgcactataaatgtttggcatttg 148  Q
    ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  5440261 taatgaaccataacattgattcaagtcaaatgggtgttttctctcatgtgaagggtcatataatgcactataaatgcttggcatttg 5440347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 62 - 148
Target Start/End: Original strand, 5449271 - 5449357
Alignment:
Q  62 taatgaaccataatattgattcaagtcaaatgagtgttttctctcatgtgaagggtcatataatgcactataaatgtttggcatttg 148  Q
    ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  5449271 taatgaaccataacattgattcaagtcaaatgggtgttttctctcatgtgaagggtcatataatgcactataaatgcttggcatttg 5449357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 42 - 246
Target Start/End: Complemental strand, 12857053 - 12856843
Alignment:
Q  42 aacctgtggcaaaaaggtgct-aatgaaccataatattgattcaagtcaaatgagtgttttctctcatgtgaagggtcatataatgcactataaatgttt 140  Q
    ||||| |||||||| |||||| |||||| |||   |||||||||||| |||   ||| |||||||||||||||| |||||||||||||||||||||| ||    
T  12857053 aacctttggcaaaagggtgcttaatgaatcatggcattgattcaagttaaagaggtgctttctctcatgtgaagagtcatataatgcactataaatgctt 12856954  T
Q  141 ggcatttgaccattagtttgacagagaa------cagaacaacacacaattttggatagaattttgttacattaacaacataattcttcaccattctttt 234  Q
    | ||||||  ||||||||  | | | ||      || ||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||    
T  12856953 gacatttgggcattagttgaatatacaaaaaccacacaactacacacaattt-ggacagaattttgttacattaacaacataattcttcaccattctatt 12856855  T
Q  235 actctaaatcat 246  Q
    | ||||||||||    
T  12856854 attctaaatcat 12856843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 42 - 246
Target Start/End: Complemental strand, 26051285 - 26051075
Alignment:
Q  42 aacctgtggcaaaaaggtgct-aatgaaccataatattgattcaagtcaaatgagtgttttctctcatgtgaagggtcatataatgcactataaatgttt 140  Q
    ||||| |||||||| |||||| |||||| |||   |||||||||||| |||   ||| |||||||||||||||| |||||||||||||||||||||| ||    
T  26051285 aacctttggcaaaagggtgcttaatgaatcatggcattgattcaagttaaagaggtgctttctctcatgtgaagagtcatataatgcactataaatgctt 26051186  T
Q  141 ggcatttgaccattagtttgacagagaa------cagaacaacacacaattttggatagaattttgttacattaacaacataattcttcaccattctttt 234  Q
    | |||||   ||||||||  | | | ||      || ||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||    
T  26051185 gacatttaggcattagttgaatatacaaaaaccacacaactacacacaattt-ggacagaattttgttacattaacaacataattcttcaccattctatt 26051087  T
Q  235 actctaaatcat 246  Q
    | ||||||||||    
T  26051086 attctaaatcat 26051075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 42 - 246
Target Start/End: Complemental strand, 26056398 - 26056188
Alignment:
Q  42 aacctgtggcaaaaaggtgct-aatgaaccataatattgattcaagtcaaatgagtgttttctctcatgtgaagggtcatataatgcactataaatgttt 140  Q
    ||||| |||||||| |||||| |||||| |||   |||||||||||| |||   ||| |||||||||||||||| |||||||||||||||||||||| ||    
T  26056398 aacctttggcaaaagggtgcttaatgaatcatggcattgattcaagttaaagaggtgctttctctcatgtgaagagtcatataatgcactataaatgctt 26056299  T
Q  141 ggcatttgaccattagtttgacagagaa------cagaacaacacacaattttggatagaattttgttacattaacaacataattcttcaccattctttt 234  Q
    | |||||   ||||||||  | | | ||      || ||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||    
T  26056298 gacatttaggcattagttgaatatacaaaaaccacacaactacacacaattt-ggacagaattttgttacattaacaacataattcttcaccattctatt 26056200  T
Q  235 actctaaatcat 246  Q
    | ||||||||||    
T  26056199 attctaaatcat 26056188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 42 - 246
Target Start/End: Complemental strand, 26060644 - 26060434
Alignment:
Q  42 aacctgtggcaaaaaggtgct-aatgaaccataatattgattcaagtcaaatgagtgttttctctcatgtgaagggtcatataatgcactataaatgttt 140  Q
    ||||| |||||||| |||||| |||||| |||   |||||||||||| |||   ||| |||||||||||||||| |||||||||||||||||||||| ||    
T  26060644 aacctttggcaaaagggtgcttaatgaatcatggcattgattcaagttaaagaggtgctttctctcatgtgaagagtcatataatgcactataaatgctt 26060545  T
Q  141 ggcatttgaccattagtttgacagagaa------cagaacaacacacaattttggatagaattttgttacattaacaacataattcttcaccattctttt 234  Q
    | |||||   ||||||||  | | | ||      || ||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||    
T  26060544 gacatttaggcattagttgaatatacaaaaaccacacaactacacacaattt-ggacagaattttgttacattaacaacataattcttcaccattctatt 26060446  T
Q  235 actctaaatcat 246  Q
    | ||||||||||    
T  26060445 attctaaatcat 26060434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 42 - 246
Target Start/End: Complemental strand, 26065757 - 26065547
Alignment:
Q  42 aacctgtggcaaaaaggtgct-aatgaaccataatattgattcaagtcaaatgagtgttttctctcatgtgaagggtcatataatgcactataaatgttt 140  Q
    ||||| |||||||| |||||| |||||| |||   |||||||||||| |||   ||| |||||||||||||||| |||||||||||||||||||||| ||    
T  26065757 aacctttggcaaaagggtgcttaatgaatcatggcattgattcaagttaaagaggtgctttctctcatgtgaagagtcatataatgcactataaatgctt 26065658  T
Q  141 ggcatttgaccattagtttgacagagaa------cagaacaacacacaattttggatagaattttgttacattaacaacataattcttcaccattctttt 234  Q
    | |||||   ||||||||  | | | ||      || ||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||    
T  26065657 gacatttaggcattagttgaatatacaaaaaccacacaactacacacaattt-ggacagaattttgttacattaacaacataattcttcaccattctatt 26065559  T
Q  235 actctaaatcat 246  Q
    | ||||||||||    
T  26065558 attctaaatcat 26065547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 62 - 163
Target Start/End: Original strand, 4181364 - 4181465
Alignment:
Q  62 taatgaaccataatattgattcaagtcaaatgagtgttttctctcatgtgaagggtcatataatgcactataaatgtttggcatttgaccattagtttga 161  Q
    ||||||||| ||| ||||||||||||||||   |||||||||||||| ||||| |||||||||||||||||||||||||| ||||||  ||||| |||||    
T  4181364 taatgaaccttaacattgattcaagtcaaaatggtgttttctctcatatgaagagtcatataatgcactataaatgtttgacatttgggcattaatttga 4181463  T
Q  162 ca 163  Q
    ||    
T  4181464 ca 4181465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 42 - 246
Target Start/End: Complemental strand, 12851940 - 12851728
Alignment:
Q  42 aacctgtggcaaaaaggtgct-aatgaaccataatattgattcaagtcaaatgagtgttttctctcatgtgaagggtcatataatgcactataaatgttt 140  Q
    ||||| |||||||| |||||| |||||| ||| | |||||||||||| ||||  ||| |||||||||||||||| |||||||||||||||||||||  ||    
T  12851940 aacctttggcaaaagggtgcttaatgaatcatgacattgattcaagttaaataggtgctttctctcatgtgaagagtcatataatgcactataaatactt 12851841  T
Q  141 ggcatttgaccattagtttgacagaga--------acagaacaacacacaattttggatagaattttgttacattaacaacataattcttcaccattctt 232  Q
    | ||||||  ||||||||  | | | |        | | ||| |||||||| |||||| | ||||||||||||||||||||||||||||||| ||||||     
T  12851840 gacatttgggcattagttgaagatatacaaaaaccatacaactacacacaa-tttggacaaaattttgttacattaacaacataattcttcatcattcta 12851742  T
Q  233 ttactctaaatcat 246  Q
    ||| ||||||||||    
T  12851741 ttattctaaatcat 12851728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 176 - 246
Target Start/End: Complemental strand, 14610487 - 14610418
Alignment:
Q  176 acacacaattttggatagaattttgttacattaacaacataattcttcaccattcttttactctaaatcat 246  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||    
T  14610487 acacacaattt-ggacagaattttgttacattaacaacataattcttcatcattctcttattctaaatcat 14610418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 62 - 136
Target Start/End: Original strand, 37459824 - 37459898
Alignment:
Q  62 taatgaaccataatattgattcaagtcaaatgagtgttttctctcatgtgaagggtcatataatgcactataaat 136  Q
    ||||||||||||| ||  |||||| ||||||| ||||||||||||||||||| || |||||||||||||||||||    
T  37459824 taatgaaccataacatcaattcaaatcaaatgcgtgttttctctcatgtgaatggacatataatgcactataaat 37459898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 246
Target Start/End: Original strand, 4181478 - 4181532
Alignment:
Q  192 agaattttgttacattaacaacataattcttcaccattcttttactctaaatcat 246  Q
    ||||||||||| |||||||||||||||||| |  |||||| ||| ||||||||||    
T  4181478 agaattttgttgcattaacaacataattctccctcattctcttaatctaaatcat 4181532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 122
Target Start/End: Complemental strand, 14610593 - 14610512
Alignment:
Q  42 aacctgtggcaaaaaggtgct-aatgaaccataatattgattcaagtcaaatgagtgttttctctcatgtgaagggtcatat 122  Q
    ||||| |||||||| |||||| |||||| |||   ||||||||||||||||   ||| |||||||||||||||| |||||||    
T  14610593 aacctttggcaaaagggtgcttaatgaatcatggcattgattcaagtcaaagaggtgctttctctcatgtgaagagtcatat 14610512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 246
Target Start/End: Original strand, 37459938 - 37459991
Alignment:
Q  193 gaattttgttacattaacaacataattcttcaccattcttttactctaaatcat 246  Q
    ||||| |||||||| |||||||||||||| |  |||||| ||||||||||||||    
T  37459938 gaattatgttacatgaacaacataattctcccacattctcttactctaaatcat 37459991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 62 - 146
Target Start/End: Complemental strand, 144313 - 144229
Alignment:
Q  62 taatgaaccataatattgattcaagtcaaatgagtgttttctctcatgtgaagggtcatataatgcactataaatgtttggcatt 146  Q
    ||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  144313 taatgaaccataacattgattcaagtcaaaggggtgttttctctcatgtgaagggtcatataatgcactataaatacttggcatt 144229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 176 - 221
Target Start/End: Complemental strand, 144222 - 144177
Alignment:
Q  176 acacacaattttggatagaattttgttacattaacaacataattct 221  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  144222 acacacaattttggatagaattttgttgcattaacaacataattct 144177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 42 - 246
Target Start/End: Original strand, 1959 - 2169
Alignment:
Q  42 aacctgtggcaaaaaggtgct-aatgaaccataatattgattcaagtcaaatgagtgttttctctcatgtgaagggtcatataatgcactataaatgttt 140  Q
    ||||| |||||||| |||||| |||||| |||   |||||||||||| |||   |||||||||||||||||||| |||||||||||||||||||||| ||    
T  1959 aacctttggcaaaagggtgcttaatgaatcatggcattgattcaagttaaagaggtgttttctctcatgtgaagagtcatataatgcactataaatgctt 2058  T
Q  141 ggcatttgaccattagtttgacagaga------acagaacaacacacaattttggatagaattttgttacattaacaacataattcttcaccattctttt 234  Q
    | ||||||  ||||||||  | | | |      ||| ||| ||||||||  ||||| |||||||| |||||||||||||||||||||||| |||||| ||    
T  2059 gacatttgggcattagttgaatatacaaaaaccacacaactacacacaa-cttggacagaattttattacattaacaacataattcttcatcattctatt 2157  T
Q  235 actctaaatcat 246  Q
    | ||||||||||    
T  2158 attctaaatcat 2169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 62 - 141
Target Start/End: Complemental strand, 173586 - 173507
Alignment:
Q  62 taatgaaccataatattgattcaagtcaaatgagtgttttctctcatgtgaagggtcatataatgcactataaatgtttg 141  Q
    ||||||||| ||  |||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||    
T  173586 taatgaaccttagcattgattcaagtcaaatgggtgttttctatcatgtgaagggtcatataatgcgctataaatgtttg 173507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 192 - 246
Target Start/End: Complemental strand, 173466 - 173412
Alignment:
Q  192 agaattttgttacattaacaacataattcttcaccattcttttactctaaatcat 246  Q
    ||||||||||||||| ||||||||||||||||   ||||| ||||||||||||||    
T  173466 agaattttgttacatcaacaacataattcttcctaattctcttactctaaatcat 173412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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