View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0748_low_40 (Length: 249)

Name: NF0748_low_40
Description: NF0748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0748_low_40
NF0748_low_40
[»] chr8 (2 HSPs)
chr8 (45-146)||(32533767-32533868)
chr8 (92-146)||(32548669-32548722)


Alignment Details
Target: chr8 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 45 - 146
Target Start/End: Original strand, 32533767 - 32533868
Alignment:
Q  45 atcacactcactgaaacaagttaaaatttaaccagacgggacacatactatactacatgcacaaacatcagaatgcaaagataaagagtctgccatccta 144  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32533767 atcacacccactgaaacaagttaaaatttaaccagacgggacgcatactatactacatgcacaaacatcagaatgcaaagataaagagtctgccatccta 32533866  T
Q  145 at 146  Q
    ||    
T  32533867 at 32533868  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 146
Target Start/End: Original strand, 32548669 - 32548722
Alignment:
Q  92 ctatactacatgcacaaacatcagaatgcaaagataaagagtctgccatcctaat 146  Q
    ||||||||||| |||||||||||| ||||||| ||||||||||||  ||||||||    
T  32548669 ctatactacattcacaaacatcag-atgcaaaaataaagagtctggtatcctaat 32548722  T

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