View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0748_low_41 (Length: 247)
Name: NF0748_low_41
Description: NF0748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0748_low_41 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 10 - 247
Target Start/End: Complemental strand, 34986162 - 34985925
Alignment:
| Q |
10 |
atataacctaaggtaattaaaacatcaaaactgaactattatactccagtttttgtttataatcaaaactaaaaggagtatatgtatgtatcgaaccttg |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
34986162 |
atataacctaaggtaattaaaacatcaaaactgaactattatactccattttttgtttataatcaaaactaaaagcagtatatgtatgtatcaaaccttg |
34986063 |
T |
|
| Q |
110 |
gagtttccatcgggcattccttcaatcaaacagcctgaaggtctcttatgaaaattgtttgaaggagattgtaaaatgtcctccaaagatacatcaacaa |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34986062 |
gagtttccatcgggcattccttcaatcaaacagccagaaggtcttttatgaaaattgttagaaggagattgtaaaatgtcctccaaagatacatcaacaa |
34985963 |
T |
|
| Q |
210 |
cagcccatatgttatgagtgaattgtttgctatatctt |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34985962 |
cagcccatatgttatgagtgaattgtttgctatatctt |
34985925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 61 - 247
Target Start/End: Complemental strand, 34994475 - 34994289
Alignment:
| Q |
61 |
tttgtttataatcaaaactaaaaggagtatatgtatgtatcgaaccttggagtttccatcgggcattccttcaatcaaacagcctgaaggtctcttatga |
160 |
Q |
| |
|
|||| |||||| |||| |||| |||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
34994475 |
tttgcttataaagaaaattaaagggagtatatgtatgtaaagaaccttggagtttccattgggcattcctataatcaaacagcctgaaggtcttttatga |
34994376 |
T |
|
| Q |
161 |
aaattgtttgaaggagattgtaaaatgtcctccaaagatacatcaacaacagcccatatgttatgagtgaattgtttgctatatctt |
247 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
34994375 |
aaattgtttgagaaagaaggtaaaatgtcctccaaagatacatcaacaacagcccatatgttatgagtaaattgtttgctatatctt |
34994289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3614 times since January 2019
Visitors: 4816