View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0748_low_6 (Length: 479)
Name: NF0748_low_6
Description: NF0748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0748_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 397
Target Start/End: Original strand, 4670418 - 4670814
Alignment:
| Q |
1 |
catcacaatgttttctatagtagtgcagttggtgtccaatctattgtgtataggttctgcctaatcaccaacgattcaccatatgatcaacaacaatgat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
4670418 |
catcacaatgttttctatagtagtgcagttggtgtccaatctattgtgtataggttctgcctaatcactaacgattcaccatatgatcaacaacaatgat |
4670517 |
T |
|
| Q |
101 |
ctcttgatcgtcgtacaattgaatttttaatttgacgacaatgacgttgacttttgtccttctagtattttgttatattcaaagcttgttatgtagtttg |
200 |
Q |
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||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
4670518 |
ctcttga----cgtacaattgaatttttaatttgacaacaatgacgttgacttttgtccttctagtatattgttatattcaaagcttgttatgtagtttg |
4670613 |
T |
|
| Q |
201 |
aaataaatcaacaaactcatattgttgaagccttccttcaaaatcaagattaaccatcttgttgtcattgtctctaaatgannnnnnnataacgacgact |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||| |
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| T |
4670614 |
aaataaatcaacaaactcatattgttgaagccttccttcaaaatcaagattaaccatcttgatgtcattgtctctaaatgatttttttataactacgact |
4670713 |
T |
|
| Q |
301 |
tctcaatgatgataaatcactagtggattcgtcaatatacgattatatgcgttgcatttacaatcgtgcttactc----tgcattcgtaatttcttgcaa |
396 |
Q |
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||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |
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| T |
4670714 |
tctcaatgatgataaatcactagtggatttgtcaatatatgattatatgcgttgcacttacaatcgtgcttactctgcatgcattcgtaatttcttgcaa |
4670813 |
T |
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