View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0749_high_12 (Length: 363)
Name: NF0749_high_12
Description: NF0749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0749_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 25 - 222
Target Start/End: Complemental strand, 43744829 - 43744632
Alignment:
| Q |
25 |
atacgcactctttctcaagattattgatcggctaattactttattaagatttgacaaatctgattattttaaattttatgctatgaggtgggcattattt |
124 |
Q |
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| T |
43744829 |
atacgcactctttctcaagattattgatcggctaattactttattaagatttgacaaatctgattattttaaattttatgctatgaggtgggcattattt |
43744730 |
T |
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| Q |
125 |
agggtccctaaaactattcaatttgcatgtatgccgtagggattggaatggtcaaacctatgaagtataataatgtatcctcaccacccttttataac |
222 |
Q |
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| T |
43744729 |
agggtccctaaaactattcaatttgcatgtatgccgtagggattggaatggtcaaacctatgaagtataataatgtatcctcaccacccttttataac |
43744632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 212 - 328
Target Start/End: Complemental strand, 43744226 - 43744110
Alignment:
| Q |
212 |
ccttttataacccgtttatcattttcaattaattaggattccaattctttccattttttaattgaatgagaaagcttcccgttacagtcagcaaagtaac |
311 |
Q |
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| T |
43744226 |
ccttttataacccgtttatcattttcaattaattaggattccaattctttccattttttaattgaatgagaaagcttcccgttacagtcagcaaagtaac |
43744127 |
T |
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| Q |
312 |
tctattttcagcgtttt |
328 |
Q |
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| T |
43744126 |
tctattttcagcgtttt |
43744110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 324 - 358
Target Start/End: Complemental strand, 33858584 - 33858550
Alignment:
| Q |
324 |
gttttttggctggtccggttttaaggggggttttt |
358 |
Q |
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| T |
33858584 |
gttttttggctggtccggttttaaggggggttttt |
33858550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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