View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0749_high_18 (Length: 262)

Name: NF0749_high_18
Description: NF0749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0749_high_18
NF0749_high_18
[»] chr5 (4 HSPs)
chr5 (22-126)||(34658469-34658573)
chr5 (22-126)||(19185766-19185871)
chr5 (22-126)||(20933015-20933119)
chr5 (22-111)||(20929152-20929241)
[»] chr7 (6 HSPs)
chr7 (22-126)||(7160111-7160215)
chr7 (22-129)||(47920974-47921084)
chr7 (22-126)||(15933910-15934014)
chr7 (22-126)||(22075837-22075941)
chr7 (22-126)||(15942253-15942357)
chr7 (71-127)||(3844857-3844913)
[»] chr3 (5 HSPs)
chr3 (22-126)||(23047943-23048047)
chr3 (22-126)||(11176371-11176475)
chr3 (22-114)||(3791129-3791221)
chr3 (38-114)||(3828904-3828980)
chr3 (78-129)||(11295701-11295752)
[»] chr4 (8 HSPs)
chr4 (22-126)||(16636969-16637074)
chr4 (46-127)||(11165528-11165609)
chr4 (37-126)||(35976053-35976143)
chr4 (22-126)||(14224732-14224836)
chr4 (22-126)||(39372710-39372814)
chr4 (22-126)||(25157542-25157645)
chr4 (22-126)||(14234827-14234931)
chr4 (35-104)||(27078921-27078990)
[»] chr6 (3 HSPs)
chr6 (22-126)||(7845986-7846090)
chr6 (22-126)||(7960911-7961015)
chr6 (22-126)||(7840002-7840106)
[»] scaffold0513 (1 HSPs)
scaffold0513 (22-128)||(6277-6383)
[»] scaffold0010 (1 HSPs)
scaffold0010 (22-126)||(117273-117377)
[»] chr8 (1 HSPs)
chr8 (22-126)||(19900546-19900650)
[»] scaffold0177 (1 HSPs)
scaffold0177 (22-126)||(33451-33554)
[»] chr2 (1 HSPs)
chr2 (22-126)||(28387287-28387391)
[»] chr1 (2 HSPs)
chr1 (22-126)||(18476637-18476741)
chr1 (22-126)||(18486732-18486836)
[»] scaffold0226 (1 HSPs)
scaffold0226 (22-126)||(4821-4925)
[»] scaffold0158 (1 HSPs)
scaffold0158 (46-126)||(27844-27924)
[»] scaffold0029 (2 HSPs)
scaffold0029 (22-126)||(75625-75729)
scaffold0029 (27-126)||(87350-87449)
[»] scaffold0001 (1 HSPs)
scaffold0001 (22-126)||(187375-187479)
[»] scaffold1407 (1 HSPs)
scaffold1407 (22-115)||(289-381)
[»] scaffold0059 (1 HSPs)
scaffold0059 (22-127)||(37769-37875)
[»] scaffold0453 (1 HSPs)
scaffold0453 (46-126)||(12968-13048)
[»] scaffold0035 (2 HSPs)
scaffold0035 (22-126)||(86782-86886)
scaffold0035 (22-126)||(96476-96580)
[»] scaffold0267 (1 HSPs)
scaffold0267 (48-104)||(4571-4627)


Alignment Details
Target: chr5 (Bit Score: 89; Significance: 6e-43; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 22 - 126
Target Start/End: Original strand, 34658469 - 34658573
Alignment:
Q  22 agatgaacaacgtgacaatagataacggtacttgacattggtctctgtgggattcgacatcttttatactaaaaccgatattttcgtgcacttgtggacc 121  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |||||    
T  34658469 agataaacaacgtgacaatagataacggtacttgacattggtctctgtgggattcgacatcttttatactaaaatcgatatttccgtgcacttgcggacc 34658568  T
Q  122 tatca 126  Q
    |||||    
T  34658569 tatca 34658573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 22 - 126
Target Start/End: Original strand, 19185766 - 19185871
Alignment:
Q  22 agatgaacaacgtgacaatagataacggtacttgacattggtctctgtgggattcgacatcttttatactaaaa-ccgatattttcgtgcacttgtggac 120  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||| ||||    
T  19185766 agataaacaacgtgacaatagataacagtacttgacattggtctctgtgggattcgacatcttttatactaaaatctgatatttttgtgcacttgcggac 19185865  T
Q  121 ctatca 126  Q
    ||||||    
T  19185866 ctatca 19185871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 22 - 126
Target Start/End: Complemental strand, 20933119 - 20933015
Alignment:
Q  22 agatgaacaacgtgacaatagataacggtacttgacattggtctctgtgggattcgaca-tcttttatactaaaaccgatattttcgtgcacttgtggac 120  Q
    |||| |||||||| |||||  || ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||| ||||    
T  20933119 agataaacaacgtaacaattaattacggtacttgacattggtctctgtggg-ttcgacaatcttttatactaaaaccgatatttccgtgcacttgcggac 20933021  T
Q  121 ctatca 126  Q
    ||||||    
T  20933020 ctatca 20933015  T

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Target: chr5; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 22 - 111
Target Start/End: Original strand, 20929152 - 20929241
Alignment:
Q  22 agatgaacaacgtgacaatagataacggtacttgacattggtctctgtgggattcgac-atcttttatactaaaaccgatattttcgtgca 111  Q
    |||| |||||||| |||||  || ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||    
T  20929152 agataaacaacgtaacaattaattacggtacttgacattggtctctgtggg-ttcgacaatcttttatactaaaaccgatatttccgtgca 20929241  T

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Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 22 - 126
Target Start/End: Original strand, 7160111 - 7160215
Alignment:
Q  22 agatgaacaacgtgacaatagataacggtacttgacattggtctctgtgggattcgacatcttttatactaaaaccgatattttcgtgcacttgtggacc 121  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |    
T  7160111 agataaacaacgtgacaatagttaacggtacttgacattggtctctgtgggattcgacatcttttatactaaaaccgatatttccgtgcacttgcggatc 7160210  T
Q  122 tatca 126  Q
    |||||    
T  7160211 tatca 7160215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 22 - 129
Target Start/End: Complemental strand, 47921084 - 47920974
Alignment:
Q  22 agatgaacaacgtgacaatagataacggtacttgacattggtctctgtgggattcgacatcttttatactaaa---accgatattttcgtgcacttgtgg 118  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||   ||||||||||  ||||||||||||    
T  47921084 agataaacaacgtgacaatagataacggtacttgacattgatctctgtgggattcgacatcttttatactaaaaccaccgatatttctgtgcacttgtgg 47920985  T
Q  119 acctatcatat 129  Q
    |||||||||||    
T  47920984 acctatcatat 47920974  T

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Target: chr7; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 22 - 126
Target Start/End: Original strand, 15933910 - 15934014
Alignment:
Q  22 agatgaacaacgtgacaatagataacggtacttgacattggtctctgtgggattcgaca-tcttttatactaaaaccgatattttcgtgcacttgtggac 120  Q
    |||| |||||||| |||||  || ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||| ||||    
T  15933910 agataaacaacgtaacaattaattacggtacttgacattggtctctgtggg-ttcgacaatcttttatactaaaaccgatatttccgtgcacttgcggac 15934008  T
Q  121 ctatca 126  Q
    ||||||    
T  15934009 ctatca 15934014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 22 - 126
Target Start/End: Original strand, 22075837 - 22075941
Alignment:
Q  22 agatgaacaacgtgacaatagataacggtacttgacattggtctctgtgggattcgacatcttttatactaaaaccgatattttcgtgcacttgtggacc 121  Q
    |||| ||||| ||| | |||||||||||||| |||||||| |||  ||||||||| ||||||||||||||||||| ||||||| |||||||||| |||||    
T  22075837 agataaacaatgtggcgatagataacggtacatgacattgctctgagtgggattcaacatcttttatactaaaactgatatttccgtgcacttgcggacc 22075936  T
Q  122 tatca 126  Q
    |||||    
T  22075937 tatca 22075941  T

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Target: chr7; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 22 - 126
Target Start/End: Original strand, 15942253 - 15942357
Alignment:
Q  22 agatgaacaacgtgacaatagataacggtacttgacattggtctctgtgggattcgac-atcttttatactaaaaccgatattttcgtgcacttgtggac 120  Q
    |||| |||||||| |||||  || ||||||||||||||||||||||||||| |||||| |||||||| | |||||||||||||| |||||||||| ||||    
T  15942253 agataaacaacgtaacaattaattacggtacttgacattggtctctgtggg-ttcgacaatcttttaaaataaaaccgatatttccgtgcacttgcggac 15942351  T
Q  121 ctatca 126  Q
    ||||||    
T  15942352 ctatca 15942357  T

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Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 127
Target Start/End: Complemental strand, 3844913 - 3844857
Alignment:
Q  71 ggattcgacatcttttatactaaaaccgatattttcgtgcacttgtggacctatcat 127  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||  ||||||||||    
T  3844913 ggattcaacaacttttatactaaaaccgatattttcgtgcacttgcagacctatcat 3844857  T

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Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 22 - 126
Target Start/End: Original strand, 23047943 - 23048047
Alignment:
Q  22 agatgaacaacgtgacaatagataacggtacttgacattggtctctgtgggattcgacatcttttatactaaaaccgatattttcgtgcacttgtggacc 121  Q
    |||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |||    
T  23047943 agataaacaacgtgacaatagataacgatacttgacattggtctttgtgggattcgacatcttttatactaaaaccgatattttcgtgcacttgggaacc 23048042  T
Q  122 tatca 126  Q
    |||||    
T  23048043 tatca 23048047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 22 - 126
Target Start/End: Complemental strand, 11176475 - 11176371
Alignment:
Q  22 agatgaacaacgtgacaatagataacggtacttgacattggtctctgtgggattcgaca-tcttttatactaaaaccgatattttcgtgcacttgtggac 120  Q
    |||| |||||||| |||||  || ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||| ||||    
T  11176475 agataaacaacgtaacaattaattacggtacttgacattggtctctgtggg-ttcgacaatcttttatactaaaaccgatatttccgtgcacttgcggac 11176377  T
Q  121 ctatca 126  Q
    ||||||    
T  11176376 ctatca 11176371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 22 - 114
Target Start/End: Complemental strand, 3791221 - 3791129
Alignment:
Q  22 agatgaacaacgtgacaatagataacggtacttgacattggtctctgtgggattcgacatcttttatactaaaaccgatattttcgtgcactt 114  Q
    |||| ||||| |||||||||||||| |||||||||||||||||||||||  |||||| |||||||||||| ||| ||||||||  ||||||||    
T  3791221 agataaacaatgtgacaatagataatggtacttgacattggtctctgtgaaattcgagatcttttatactgaaatcgatatttctgtgcactt 3791129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 38 - 114
Target Start/End: Complemental strand, 3828980 - 3828904
Alignment:
Q  38 aatagataacggtacttgacattggtctctgtgggattcgacatcttttatactaaaaccgatattttcgtgcactt 114  Q
    ||||||||| | |||||||||||||||||||||  |||||| |||||||||||| ||| ||||||||  ||||||||    
T  3828980 aatagataatgatacttgacattggtctctgtgaaattcgagatcttttatactgaaatcgatatttctgtgcactt 3828904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 78 - 129
Target Start/End: Complemental strand, 11295752 - 11295701
Alignment:
Q  78 acatcttttatactaaaaccgatattttcgtgcacttgtggacctatcatat 129  Q
    |||| |||||||||||||||||||||| |||||||||  |||||| ||||||    
T  11295752 acattttttatactaaaaccgatatttccgtgcacttacggacctgtcatat 11295701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 22 - 126
Target Start/End: Original strand, 16636969 - 16637074
Alignment:
Q  22 agatgaacaacgtgacaatagataacggtacttgacattggtctctgtgggattcgacatctttta-tactaaaaccgatattttcgtgcacttgtggac 120  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||| ||||||||| ||||    
T  16636969 agataaacaacgtgacaatagataacggtacttgacattggtctctgtggaattcgacatcttttattactaaaatcgatatttttgtgcacttgcggac 16637068  T
Q  121 ctatca 126  Q
    ||||||    
T  16637069 ctatca 16637074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 46 - 127
Target Start/End: Original strand, 11165528 - 11165609
Alignment:
Q  46 acggtacttgacattggtctctgtgggattcgaca-tcttttatactaaaaccgatattttcgtgcacttgtggacctatcat 127  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||    
T  11165528 acggtacttgacattggtctctgtggg-ttcgacaatcttttatactaaaaccgatatttccgtgcacttgtggacctatcat 11165609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 37 - 126
Target Start/End: Original strand, 35976053 - 35976143
Alignment:
Q  37 caatagataacggtacttgacattggtctct-gtgggattcgacatcttttatactaaaaccgatattttcgtgcacttgtggacctatca 126  Q
    ||||||||||||||||||||||||| ||| | |||  |||||| |||||||||||||||||| ||||||||||||||||||||||||||||    
T  35976053 caatagataacggtacttgacattgatcttttgtgaaattcgatatcttttatactaaaaccaatattttcgtgcacttgtggacctatca 35976143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 22 - 126
Target Start/End: Original strand, 14224732 - 14224836
Alignment:
Q  22 agatgaacaacgtgacaatagataacggtacttgacattggtctctgtgggattcgaca-tcttttatactaaaaccgatattttcgtgcacttgtggac 120  Q
    |||| |||||||| |||||  || ||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||| ||||    
T  14224732 agataaacaacgtaacaattaattacgatacttgacattggtctctgtggg-ttcgacaatcttttatactaaaaccgatatttccgtgcacttgcggac 14224830  T
Q  121 ctatca 126  Q
    ||||||    
T  14224831 ctatca 14224836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 22 - 126
Target Start/End: Original strand, 39372710 - 39372814
Alignment:
Q  22 agatgaacaacgtgacaatagataacggtacttgacattggtctctgtgggattcgaca-tcttttatactaaaaccgatattttcgtgcacttgtggac 120  Q
    |||| |||||||| |||||  || ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||| | ||    
T  39372710 agataaacaacgtaacaattaattacggtacttgacattggtctctgtggg-ttcgacaatcttttatactaaaaccgatatttccgtgcacttgcgaac 39372808  T
Q  121 ctatca 126  Q
    ||||||    
T  39372809 ctatca 39372814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 22 - 126
Target Start/End: Original strand, 25157542 - 25157645
Alignment:
Q  22 agatgaacaacgtgacaatagataacggtacttgacattggtctctgtgggattcgacatcttttatactaaaaccgatattttcgtgcacttgtggacc 121  Q
    |||| |||||| |||||||| |||||| |||||||||||||||| |||  ||||||||||| ||||||||||||||||||||| |||||||||| || ||    
T  25157542 agataaacaacatgacaataaataacgatacttgacattggtctatgtaagattcgacatc-tttatactaaaaccgatatttccgtgcacttgcgggcc 25157640  T
Q  122 tatca 126  Q
    |||||    
T  25157641 tatca 25157645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 22 - 126
Target Start/End: Original strand, 14234827 - 14234931
Alignment:
Q  22 agatgaacaacgtgacaatagataacggtacttgacattggtctctgtgggattcgaca-tcttttatactaaaaccgatattttcgtgcacttgtggac 120  Q
    |||| |||||||| |||||  || ||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||  |||    
T  14234827 agataaacaacgtaacaattaattacgatacttgacattggtctctgtggg-ttcgacaatcttttatactaaaaccgatatttccgtgcacttgcagac 14234925  T
Q  121 ctatca 126  Q
    ||||||    
T  14234926 ctatca 14234931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 35 - 104
Target Start/End: Complemental strand, 27078990 - 27078921
Alignment:
Q  35 gacaatagataacggtacttgacattggtctctgtgggattcgacatcttttatactaaaaccgatattt 104  Q
    |||||||||||||||||||| ||||| |||| |||||||||| |||||||||||| ||||||||||||||    
T  27078990 gacaatagataacggtacttaacattagtctatgtgggattcaacatcttttatattaaaaccgatattt 27078921  T

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Target: chr6 (Bit Score: 77; Significance: 8e-36; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 22 - 126
Target Start/End: Original strand, 7845986 - 7846090
Alignment:
Q  22 agatgaacaacgtgacaatagataacggtacttgacattggtctctgtgggattcgacatcttttatactaaaaccgatattttcgtgcacttgtggacc 121  Q
    |||| ||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||    
T  7845986 agataaacaatgtgacaatatataacggtacttgacgttggtctctgtgggattcgacatcttttatactaaaaccgatatttccatgcacttgcggacc 7846085  T
Q  122 tatca 126  Q
    |||||    
T  7846086 tatca 7846090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 22 - 126
Target Start/End: Original strand, 7960911 - 7961015
Alignment:
Q  22 agatgaacaacgtgacaatagataacggtacttgacattggtctctgtgggattcgacatcttttatactaaaaccgatattttcgtgcacttgtggacc 121  Q
    |||| ||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||| |||||||| |||||||||| |||||    
T  7960911 agataaacaacgtgacaatagataacggtacttgacattgatctatgtgggattcaacatcttttatactaaaatcgatatttccgtgcacttgcggacc 7961010  T
Q  122 tatca 126  Q
    |||||    
T  7961011 tatca 7961015  T

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Target: chr6; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 22 - 126
Target Start/End: Original strand, 7840002 - 7840106
Alignment:
Q  22 agatgaacaacgtgacaatagataacggtacttgacattggtctctgtgggattcgacatcttttatactaaaaccgatattttcgtgcacttgtggacc 121  Q
    |||| ||| |||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||| ||||||| |||||||||| | |||    
T  7840002 agataaacgacgtgataatagataacggtacttgacgttggtccctgtgggattcgacatcttttatactgaaacggatatttccgtgcacttgcgcacc 7840101  T
Q  122 tatca 126  Q
    |||||    
T  7840102 tatca 7840106  T

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Target: scaffold0513 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: scaffold0513
Description:

Target: scaffold0513; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 22 - 128
Target Start/End: Original strand, 6277 - 6383
Alignment:
Q  22 agatgaacaacgtgacaatagataacggtacttgacattggtctctgtgggattcgaca-tcttttatactaaaaccgatattttcgtgcacttgtggac 120  Q
    |||| |||||||| |||||  || ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||| ||||    
T  6277 agataaacaacgtaacaattaattacggtacttgacattggtctctgtggg-ttcgacaatcttttatactaaaaccgatatttccgtgcacttgcggac 6375  T
Q  121 ctatcata 128  Q
    ||||||||    
T  6376 ctatcata 6383  T

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Target: scaffold0010 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 22 - 126
Target Start/End: Original strand, 117273 - 117377
Alignment:
Q  22 agatgaacaacgtgacaatagataacggtacttgacattggtctctgtgggattcgaca-tcttttatactaaaaccgatattttcgtgcacttgtggac 120  Q
    |||| |||||||| |||||  || ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||| ||||    
T  117273 agataaacaacgtaacaattaattacggtacttgacattggtctctgtggg-ttcgacaatcttttatactaaaaccgatatttccgtgcacttgcggac 117371  T
Q  121 ctatca 126  Q
    ||||||    
T  117372 ctatca 117377  T

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Target: chr8 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 22 - 126
Target Start/End: Complemental strand, 19900650 - 19900546
Alignment:
Q  22 agatgaacaacgtgacaatagataacggtacttgacattggtctctgtgggattcgaca-tcttttatactaaaaccgatattttcgtgcacttgtggac 120  Q
    |||| |||||||| |||||  || ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||| ||||    
T  19900650 agataaacaacgtaacaattaattacggtacttgacattggtctctgtggg-ttcgacaatcttttatactaaaaccgatatttccgtgcacttgcggac 19900552  T
Q  121 ctatca 126  Q
    ||||||    
T  19900551 ctatca 19900546  T

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Target: scaffold0177 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0177
Description:

Target: scaffold0177; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 22 - 126
Target Start/End: Original strand, 33451 - 33554
Alignment:
Q  22 agatgaacaacgtgacaatagataacggtacttgacattggtctctgtgggattcgaca-tcttttatactaaaaccgatattttcgtgcacttgtggac 120  Q
    |||| |||||||| |||||  || ||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||||| |||||||||| ||||    
T  33451 agataaacaacgtaacaattaattacggtacttgacattggtctctgtgg--ttcgacaatcttttatactaaaaccgatatttccgtgcacttgcggac 33548  T
Q  121 ctatca 126  Q
    ||||||    
T  33549 ctatca 33554  T

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Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 22 - 126
Target Start/End: Original strand, 28387287 - 28387391
Alignment:
Q  22 agatgaacaacgtgacaatagataacggtacttgacattggtctctgtgggattcgaca-tcttttatactaaaaccgatattttcgtgcacttgtggac 120  Q
    |||| |||||||| |||||  || ||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||| ||||    
T  28387287 agataaacaacgtaacaattaattacgatacttgacattggtctctgtggg-ttcgacaatcttttatactaaaaccgatatttccgtgcacttgcggac 28387385  T
Q  121 ctatca 126  Q
    ||||||    
T  28387386 ctatca 28387391  T

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Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 22 - 126
Target Start/End: Complemental strand, 18476741 - 18476637
Alignment:
Q  22 agatgaacaacgtgacaatagataacggtacttgacattggtctctgtgggattcgaca-tcttttatactaaaaccgatattttcgtgcacttgtggac 120  Q
    |||| |||||||| |||||  || |||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  18476741 agataaacaacgtaacaattaattacggtacttgacattggtgtctgtggg-ttcgacaatcttttatactaaaaccgatattttcgtgcacttgcggac 18476643  T
Q  121 ctatca 126  Q
    | ||||    
T  18476642 cgatca 18476637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 22 - 126
Target Start/End: Complemental strand, 18486836 - 18486732
Alignment:
Q  22 agatgaacaacgtgacaatagataacggtacttgacattggtctctgtgggattcgaca-tcttttatactaaaaccgatattttcgtgcacttgtggac 120  Q
    |||| |||||||| |||||  || ||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||| ||||    
T  18486836 agataaacaacgtaacaattaattacgatacttgacattggtctctgtggg-ttcgacaatcttttatactaaaaccgatatttccgtgcacttgcggac 18486738  T
Q  121 ctatca 126  Q
    ||||||    
T  18486737 ctatca 18486732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0226 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0226
Description:

Target: scaffold0226; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 22 - 126
Target Start/End: Original strand, 4821 - 4925
Alignment:
Q  22 agatgaacaacgtgacaatagataacggtacttgacattggtctctgtgggattcgaca-tcttttatactaaaaccgatattttcgtgcacttgtggac 120  Q
    |||| |||||||| |||||  || ||| ||||||||||||||||||||||| ||||| | |||||||||||||||||||||||| |||||||||| ||||    
T  4821 agataaacaacgtaacaattaattacgatacttgacattggtctctgtggg-ttcgataatcttttatactaaaaccgatatttccgtgcacttgcggac 4919  T
Q  121 ctatca 126  Q
    ||||||    
T  4920 ctatca 4925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0158 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0158
Description:

Target: scaffold0158; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 46 - 126
Target Start/End: Complemental strand, 27924 - 27844
Alignment:
Q  46 acggtacttgacattggtctctgtgggattcgaca-tcttttatactaaaaccgatattttcgtgcacttgtggacctatca 126  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||| |||||||||| ||||||||||    
T  27924 acggtacttgacattggtctctgtggg-ttcgacaatcttttatactaaaacagatatttccgtgcacttgcggacctatca 27844  T

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Target: scaffold0029 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 22 - 126
Target Start/End: Complemental strand, 75729 - 75625
Alignment:
Q  22 agatgaacaacgtgacaatagataacggtacttgacattggtctctgtgggattcgaca-tcttttatactaaaaccgatattttcgtgcacttgtggac 120  Q
    |||| |||||||| |||||  || ||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||  ||||||||| ||||    
T  75729 agataaacaacgtaacaattaattacggtacttgacattggtctctgtggg-ttcgacaatcttttatactaaaacagatatttctgtgcacttgcggac 75631  T
Q  121 ctatca 126  Q
    ||||||    
T  75630 ctatca 75625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 27 - 126
Target Start/End: Complemental strand, 87449 - 87350
Alignment:
Q  27 aacaacgtgacaatagataacggtacttgacattggtctctgtgggattcgaca-tcttttatactaaaaccgatattttcgtgcacttgtggacctatc 125  Q
    |||||||| |||||  || ||||||||||||||||||||||||||| ||||| | |||||||||||||||| ||||||| |||||||||| |||||||||    
T  87449 aacaacgtaacaattaattacggtacttgacattggtctctgtggg-ttcgaaaatcttttatactaaaacagatatttccgtgcacttgcggacctatc 87351  T

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Target: scaffold0001 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 22 - 126
Target Start/End: Original strand, 187375 - 187479
Alignment:
Q  22 agatgaacaacgtgacaatagataacggtacttgacattggtctctgtgggattcgac-atcttttatactaaaaccgatattttcgtgcacttgtggac 120  Q
    |||| |||||||| |||||  || |||||||||||||||||||||||||||| ||||| | ||||||||||||||| ||||||| |||||||||| ||||    
T  187375 agataaacaacgtaacaattaattacggtacttgacattggtctctgtggga-tcgacaaccttttatactaaaacagatatttccgtgcacttgcggac 187473  T
Q  121 ctatca 126  Q
    ||||||    
T  187474 ctatca 187479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1407 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: scaffold1407
Description:

Target: scaffold1407; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 22 - 115
Target Start/End: Complemental strand, 381 - 289
Alignment:
Q  22 agatgaacaacgtgacaatagataacggtacttgacattggtctctgtgggattcgaca-tcttttatactaaaaccgatattttcgtgcacttg 115  Q
    |||| |||||||| |||||  || ||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||||| ||||||||||    
T  381 agataaacaacgtaacaattaattacggtacttgacattggtctctgtgg--ttcgacaatcttttatactaaaaccgatatttccgtgcacttg 289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 22 - 127
Target Start/End: Complemental strand, 37875 - 37769
Alignment:
Q  22 agatgaacaacgtgacaatagataacggtacttgacattggtctctgtgggattcgac-atcttttatactaaaaccgatattttcgtgcacttgtgg-a 119  Q
    |||| |||||||| |||||  || ||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||| |||||||||| || |    
T  37875 agataaacaacgtaacaattaattacggtacttgacattggtctctgtggg-ttcgacaatcttttatactaaaactgatatttccgtgcacttgcggaa 37777  T
Q  120 cctatcat 127  Q
    ||||||||    
T  37776 cctatcat 37769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0453 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0453
Description:

Target: scaffold0453; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 46 - 126
Target Start/End: Original strand, 12968 - 13048
Alignment:
Q  46 acggtacttgacattggtctctgtgggattcgaca-tcttttatactaaaaccgatattttcgtgcacttgtggacctatca 126  Q
    |||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||| |||||||||| |||| |||||    
T  12968 acggtacttgacattggtctatgtggg-ttcgacaatcttttatactaaaaccgatatttccgtgcacttgcggacatatca 13048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 22 - 126
Target Start/End: Complemental strand, 86886 - 86782
Alignment:
Q  22 agatgaacaacgtgacaatagataacggtacttgacattggtctctgtgggattcgaca-tcttttatactaaaaccgatattttcgtgcacttgtggac 120  Q
    |||| |||||||| |||||  || |||||||||||||||||||| |||||| ||||||| ||||||||||||||||| |||||| | |||||||| ||||    
T  86886 agataaacaacgtaacaattaattacggtacttgacattggtctatgtggg-ttcgacaatcttttatactaaaaccaatatttccatgcacttgcggac 86788  T
Q  121 ctatca 126  Q
    ||||||    
T  86787 ctatca 86782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 22 - 126
Target Start/End: Complemental strand, 96580 - 96476
Alignment:
Q  22 agatgaacaacgtgacaatagataacggtacttgacattggtctctgtgggattcgaca-tcttttatactaaaaccgatattttcgtgcacttgtggac 120  Q
    |||| |||||||| |||||  || | ||||||||||| ||||||||||||| ||||||| |||||||| ||||||||||||||| |||||||||| ||||    
T  96580 agataaacaacgtaacaattaattatggtacttgacactggtctctgtggg-ttcgacaatcttttattctaaaaccgatatttccgtgcacttgcggac 96482  T
Q  121 ctatca 126  Q
    ||||||    
T  96481 ctatca 96476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0267 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0267
Description:

Target: scaffold0267; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 48 - 104
Target Start/End: Complemental strand, 4627 - 4571
Alignment:
Q  48 ggtacttgacattggtctctgtgggattcgacatcttttatactaaaaccgatattt 104  Q
    |||||||||||||||||||||||  |||||| ||| ||| |||||||||||||||||    
T  4627 ggtacttgacattggtctctgtgaaattcgagatcctttgtactaaaaccgatattt 4571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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