View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0749_high_2 (Length: 592)
Name: NF0749_high_2
Description: NF0749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0749_high_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 549; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 22 - 586
Target Start/End: Complemental strand, 39944494 - 39943930
Alignment:
| Q |
22 |
catcatctgaacttgtatcttgtcttgcacgatacctgctaagaacaggtaacgatgcacttgcagcgatcctgaacgatctcgatgaaccagtcacagt |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
39944494 |
catcatctgaacttgtatcttgtcttgcacgatacctgctaagaacaggtaacgatgcacttgctgcgatcctgaacgatctcgatgagccagtcacagt |
39944395 |
T |
|
| Q |
122 |
tctatcctgcatccttcccacttctttgcagacttgatccaaaatatttaggaagtctctaacaatcataaaaattctgaaagggtgagcttcttccttt |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39944394 |
tctatcctgcatccttcccacttctttgcagacttgatccaaaatatttaggaagtctctaacaatcataaaaattctgaaagggtgagcttcttccttt |
39944295 |
T |
|
| Q |
222 |
gttgtatccccatgaaagtattctgtagcttctttcacaaggaataaggcccttatctcatcagctttgatctttaatattttttcttcggcatctttca |
321 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39944294 |
gttgtatccccatgaaagtattctgtaacttctttcacaaggaataaggcccttatctcatcagctttgatctttaatattttttcttcggcatctttca |
39944195 |
T |
|
| Q |
322 |
taaatatctctgttgagttaaagaagttcccttgcatatctggttttacatattgcaaaaccgatctcactttatcaagccccatttcaagctttgtgac |
421 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
39944194 |
taaatatctctgttgagttaaagaagttcccttgcatatctggttttacatattgcaaaaccgatctcactttatcaagccccatttcaagctttatgac |
39944095 |
T |
|
| Q |
422 |
atagctgcttaagacatccgagtccattcctgcagccttttttacattacctaagtctctactcaatccagccacaacctgtaaccctttctttttgaac |
521 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39944094 |
atagctgcttaagacatccgagtccattcctgcagccttttttacattacctaagtctctactcaatccagccacaacctgtaaccctttctttttgaac |
39943995 |
T |
|
| Q |
522 |
tcatcctcattgaactgagaattcgtttggttttgaacattctcacttgcagattcacctgttgt |
586 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39943994 |
tcatcctcattgaactgagaattcgtttggttttgaacattctcacttgcagattcacctgttgt |
39943930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 125; Significance: 4e-64; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 121 - 529
Target Start/End: Original strand, 5490074 - 5490482
Alignment:
| Q |
121 |
ttctatcctgcatccttcccacttctttgcagacttgatccaaaatatttaggaagtctctaacaatcataaaaattctgaaagggtgagcttcttcctt |
220 |
Q |
| |
|
||||||| ||||||||||||||||||||||| || ||||||||| ||||| || ||||| |||||||| |||||||| |||||||| ||||||||||| |
|
|
| T |
5490074 |
ttctatcatgcatccttcccacttctttgcaaaccaaatccaaaatgtttagaaaatctctcacaatcatgaaaattcttaaagggtgtgcttcttcctt |
5490173 |
T |
|
| Q |
221 |
tgttgtatccccatgaaagtattctgtagcttctttcacaaggaataaggcccttatctcatcagctttgatctttaatattttttcttcggcatctttc |
320 |
Q |
| |
|
|| || || ||||||||||||||| ||| ||||||||||||||||||| ||| | | |||| || || ||| | | |||| ||||| || | |||| |
|
|
| T |
5490174 |
tgctgcattcccatgaaagtattcagtaacttctttcacaaggaataaagcctctctttcatgagacttaatcctcacaatttcgtcttctgcgtatttc |
5490273 |
T |
|
| Q |
321 |
ataaatatctctgttgagttaaagaagttcccttgcatatctggttttacatattgcaaaaccgatctcactttatcaagccccatttcaagctttgtga |
420 |
Q |
| |
|
| ||| | | ||| ||||| ||||| || ||| ||||||||| || ||||||||||||| |||| |||||| ||||||||| ||||||||||||||| |
|
|
| T |
5490274 |
aaaaagagcgttgtggagttgaagaaattgcctctcatatctggcttctcatattgcaaaactgatcgcactttttcaagccccgtttcaagctttgtga |
5490373 |
T |
|
| Q |
421 |
catagctgcttaagacatccgagtccattcctgcagccttttttacattacctaagtctctactcaatccagccacaacctgtaaccctttctttttgaa |
520 |
Q |
| |
|
| ||||||||||||||||| |||||||||||||| || ||||| |||||||| | |||| |||| | ||||||||||| || || || ||||| || || |
|
|
| T |
5490374 |
cgtagctgcttaagacatctgagtccattcctgctgcttttttgacattaccaaggtctttactgagaccagccacaacatgcaatccgttcttcttaaa |
5490473 |
T |
|
| Q |
521 |
ctcatcctc |
529 |
Q |
| |
|
||| ||||| |
|
|
| T |
5490474 |
ctcttcctc |
5490482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 4876 times since January 2019
Visitors: 4840