View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0749_high_4 (Length: 465)

Name: NF0749_high_4
Description: NF0749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0749_high_4
NF0749_high_4
[»] chr3 (10 HSPs)
chr3 (62-459)||(2333328-2333725)
chr3 (77-459)||(34297451-34297831)
chr3 (62-161)||(17401009-17401108)
chr3 (340-430)||(43892076-43892166)
chr3 (378-452)||(52964153-52964227)
chr3 (378-452)||(54548330-54548404)
chr3 (370-430)||(4741615-4741675)
chr3 (374-446)||(29210867-29210939)
chr3 (340-430)||(47105849-47105939)
chr3 (378-452)||(20537702-20537776)
[»] chr2 (9 HSPs)
chr2 (62-451)||(14435856-14436245)
chr2 (238-459)||(30928091-30928301)
chr2 (118-264)||(30927946-30928088)
chr2 (363-452)||(36756959-36757048)
chr2 (369-430)||(10748045-10748106)
chr2 (369-430)||(37670734-37670795)
chr2 (378-439)||(42700143-42700204)
chr2 (379-430)||(14786012-14786063)
chr2 (340-451)||(16468366-16468477)
[»] chr4 (11 HSPs)
chr4 (80-444)||(55640875-55641236)
chr4 (101-444)||(42661259-42661597)
chr4 (370-452)||(54421412-54421494)
chr4 (378-459)||(38761380-38761461)
chr4 (379-452)||(43733915-43733988)
chr4 (378-430)||(21257050-21257102)
chr4 (369-430)||(42327927-42327988)
chr4 (369-452)||(32499541-32499624)
chr4 (369-452)||(3914758-3914841)
chr4 (378-444)||(5185491-5185557)
chr4 (370-430)||(1481027-1481087)
[»] chr8 (5 HSPs)
chr8 (378-452)||(5896315-5896389)
chr8 (378-459)||(16484150-16484231)
chr8 (369-430)||(11629495-11629556)
chr8 (369-430)||(9180755-9180816)
chr8 (369-430)||(34752714-34752775)
[»] chr7 (11 HSPs)
chr7 (305-446)||(5645219-5645360)
chr7 (371-446)||(31802462-31802537)
chr7 (369-446)||(513847-513924)
chr7 (378-459)||(27745726-27745807)
chr7 (385-453)||(18221471-18221539)
chr7 (369-452)||(41147749-41147832)
chr7 (393-452)||(43970061-43970120)
chr7 (381-439)||(36422696-36422754)
chr7 (369-439)||(41605363-41605433)
chr7 (369-446)||(12350745-12350822)
chr7 (340-405)||(43203527-43203592)
[»] chr1 (12 HSPs)
chr1 (378-459)||(27643365-27643446)
chr1 (369-452)||(33978185-33978268)
chr1 (378-452)||(28037649-28037723)
chr1 (369-430)||(39501120-39501181)
chr1 (367-430)||(38599020-38599083)
chr1 (374-452)||(7386664-7386742)
chr1 (340-430)||(23809444-23809534)
chr1 (380-428)||(15846206-15846254)
chr1 (380-428)||(15849590-15849638)
chr1 (340-430)||(44139697-44139787)
chr1 (369-430)||(14650988-14651049)
chr1 (369-430)||(14660779-14660840)
[»] scaffold0996 (1 HSPs)
scaffold0996 (369-452)||(1551-1634)
[»] chr5 (6 HSPs)
chr5 (369-439)||(13020936-13021006)
chr5 (369-430)||(13092469-13092530)
chr5 (369-452)||(23151264-23151347)
chr5 (378-452)||(28499180-28499254)
chr5 (352-429)||(7274511-7274588)
chr5 (391-452)||(10813148-10813209)
[»] chr6 (1 HSPs)
chr6 (369-430)||(10158979-10159040)
[»] scaffold0024 (1 HSPs)
scaffold0024 (371-430)||(69079-69138)
[»] scaffold0067 (1 HSPs)
scaffold0067 (369-452)||(10987-11070)
[»] scaffold0007 (1 HSPs)
scaffold0007 (369-431)||(188404-188466)


Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 62 - 459
Target Start/End: Original strand, 2333328 - 2333725
Alignment:
Q  62 gcaacgtggacgccgctattttcaacaacaattccatggtagggtatggcatgtgctttcgagattcatttgggtagcttttacttgaaaaattagatta 161  Q
    |||| ||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||| ||||||    
T  2333328 gcaatgtggatgccgctgttttcaacaacaattccatggtagggtatggtatgtgctttcgagattcattggggcagcttttacttgaaaaatcagatta 2333427  T
Q  162 catgcaattttctgctactgttcttgaagtggaaaccattgggcagctagaagctatgaagatggcaataactccaatggcatgcataatgttatatttg 261  Q
    |||||||  |||||||||| ||||| | |||||||||||||||| ||||||||||||| ||||||||||  |||||||||||||||||||||||||||||    
T  2333428 catgcaaaattctgctactattcttaaggtggaaaccattgggctgctagaagctatggagatggcaat--ctccaatggcatgcataatgttatatttg 2333525  T
Q  262 aaactgacagtagatccttggtgaatacactctactctactactactcccctaaataattttggagacc--ttgtgattcaatgtaaaaatatcttgtta 359  Q
    ||||||||||||||||| ||| |||| |||||||||||||||| |||||||| ||| | ||||||||||  ||||||||||||||||||| |||||||||    
T  2333526 aaactgacagtagatccatggagaatgcactctactctactaccactcccctcaatgaatttggagaccttttgtgattcaatgtaaaaacatcttgtta 2333625  T
Q  360 agtaatcatgactttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatctcatcctcgcccctttgttt 459  Q
    |||||||| |||||| || ||| |||||||||||||||||||||||||||||| |||||||||| ||| ||  |||||||||||| || || ||||||||    
T  2333626 agtaatcacgactttatgatgttgtttgttaggaggcaagtaaataaggttgcacatagtattgttagtgctaccttatctcatcttctcctctttgttt 2333725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 77 - 459
Target Start/End: Complemental strand, 34297831 - 34297451
Alignment:
Q  77 ctattttcaacaacaattccatggtagggtatggcatgtgctttcgagattcatttgggtagcttttacttgaaaaattagattacatgcaattttctgc 176  Q
    ||||||||||||||| ||| ||  |||| ||||| ||||||||| |||||||| |  |  || ||||||||| ||||| | ||||| ||||| |||| ||    
T  34297831 ctattttcaacaaca-ttctatcttaggatatggtatgtgctttagagattcactaagacagtttttacttggaaaatcatattacttgcaaatttccgc 34297733  T
Q  177 tactgttcttgaagtggaaaccattgggcagctagaagctatgaagatggcaataactccaatggcatgcataatgttatatttgaaactgacagtagat 276  Q
    |||||||||||||||||||||||||||   ||||||||  |||||||||||| |   | |||||| |||||| ||||||| |||||||||||||||||||    
T  34297732 tactgttcttgaagtggaaaccattggatggctagaagaaatgaagatggcagtt--ttcaatggtatgcatgatgttatctttgaaactgacagtagat 34297635  T
Q  277 ccttggtgaatacactctactctactactactcccctaaataattttggagaccttgtgattcaatgtaaaaatatcttgttaagtaatcatgactttgt 376  Q
    | || |||||| |||||||| |||||||||||| ||| ||| | |||| |||| |||||||||  ||||||||||| |||| ||||||||| |||||| |    
T  34297634 ctttagtgaatgcactctacactactactactctcctcaatgaatttgaagactttgtgattcggtgtaaaaatattttgtcaagtaatcacgactttat 34297535  T
Q  377 ggtgtcgtttgttaggaggcaagtaaataagg-ttgctcatagtattgctagagccgccttatctcatcctcgcccctttgttt 459  Q
    | |||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||| || |||||||||||    
T  34297534 gatgtcgtttgttaggaggcaagtaaataaggtttgctcatattattgttagagccgccttatctcatcttcacccctttgttt 34297451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 62 - 161
Target Start/End: Complemental strand, 17401108 - 17401009
Alignment:
Q  62 gcaacgtggacgccgctattttcaacaacaattccatggtagggtatggcatgtgctttcgagattcatttgggtagcttttacttgaaaaattagatta 161  Q
    |||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||| ||| |||||||||||| ||||| ||||||    
T  17401108 gcaacgtggatgccgctatttccaacaacaattccatggtagggtatggtatgtgcttccgagattcattcgggcagcttttacttgtaaaatcagatta 17401009  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 340 - 430
Target Start/End: Original strand, 43892076 - 43892166
Alignment:
Q  340 aatgtaaaaatatcttgttaagtaatcatgactttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagc 430  Q
    ||||||||| | ||||||||||||| |  |||| ||| |||||||||||||||||||||| |||||  || |||||||  |||||||||||    
T  43892076 aatgtaaaactctcttgttaagtaaccccgactatgtagtgtcgtttgttaggaggcaagcaaatagtgtggctcataacattgctagagc 43892166  T

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Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 378 - 452
Target Start/End: Complemental strand, 52964227 - 52964153
Alignment:
Q  378 gtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatctcatcctcgcccc 452  Q
    ||||||| | ||||||||||||| |||| ||||||||||||||| |||||| |  |||||||||||||| |||||    
T  52964227 gtgtcgtatattaggaggcaagttaatagggttgctcatagtatagctagatcttccttatctcatcctagcccc 52964153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 378 - 452
Target Start/End: Complemental strand, 54548404 - 54548330
Alignment:
Q  378 gtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatctcatcctcgcccc 452  Q
    ||||||| | ||||||||||||| ||||  |||||||||||||| ||||||||  |||||||||||||| |||||    
T  54548404 gtgtcgtatattaggaggcaagttaatagagttgctcatagtatagctagagcttccttatctcatcctagcccc 54548330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 370 - 430
Target Start/End: Complemental strand, 4741675 - 4741615
Alignment:
Q  370 actttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagc 430  Q
    ||||||| ||||||| |||||||||||| |  ||||| |||||||||||||||||||||||    
T  4741675 actttgttgtgtcgtatgttaggaggcacgctaataaagttgctcatagtattgctagagc 4741615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 374 - 446
Target Start/End: Complemental strand, 29210939 - 29210867
Alignment:
Q  374 tgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatctcatcct 446  Q
    |||||||||||||||| ||||||||| |||||| ||  ||||||| |||||||||||| | |||||| |||||    
T  29210939 tgtggtgtcgtttgttcggaggcaagcaaataaagtaactcatagcattgctagagcctctttatctaatcct 29210867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 430
Target Start/End: Original strand, 47105849 - 47105939
Alignment:
Q  340 aatgtaaaaatatcttgttaagtaatcatgactttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagc 430  Q
    ||||||||| | |||||||||||||||  |||| ||| ||||||||||| |||||||||  |||||| || |||||||  ||||| |||||    
T  47105849 aatgtaaaactctcttgttaagtaatcccgactatgtagtgtcgtttgtgaggaggcaaacaaataatgtggctcataacattgcaagagc 47105939  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 378 - 452
Target Start/End: Original strand, 20537702 - 20537776
Alignment:
Q  378 gtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatctcatcctcgcccc 452  Q
    |||||||||||| ||||||||| ||||||||| |||||||  || |||||||  |||||||| || ||| |||||    
T  20537702 gtgtcgtttgtttggaggcaagcaaataaggtagctcataagatagctagagttgccttatcacaccctagcccc 20537776  T

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Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 62 - 451
Target Start/End: Complemental strand, 14436245 - 14435856
Alignment:
Q  62 gcaacgtggacgccgctattttcaacaacaattccatggtagggtat--ggcatgtgctttcgagattcatttgggtagcttttacttgaaaaattagat 159  Q
    |||||||||| ||| ||||||||||||||||||||||||||| ||||  || |||||||||||||||||||| ||| |  ||||||||| ||||| | ||    
T  14436245 gcaacgtggatgcctctattttcaacaacaattccatggtagtgtatatggtatgtgctttcgagattcattggggcaaattttacttggaaaatcatat 14436146  T
Q  160 tacatgcaattttctgctactgttcttgaagtggaaaccattgggcagctagaagctatgaagatggcaataactccaatggcatgcataatgttatatt 259  Q
    ||| ||||| |||||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||  |||||||||  ||||||||||||||||    
T  14436145 tacttgcaaatttctgctactgttcttgaagtggaaaccattgggttgctagaagctatgaagatgacaat--ctccaatggtgtgcataatgttatatt 14436048  T
Q  260 tgaaactgacagtagatccttggtgaatacactctactctactactactcccctaaataattttggagaccttgtgattcaatgtaaaaatatcttgtta 359  Q
    |||||||||| ||||||||||||||||| |||| |||||||||||||||||||| ||| | ||||||||||||||| |||||||||||||||||||||||    
T  14436047 tgaaactgacggtagatccttggtgaatgcactttactctactactactcccctcaatgaatttggagaccttgtggttcaatgtaaaaatatcttgtta 14435948  T
Q  360 agtaatcatgactttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatctcatcctcgccc 451  Q
    ||||||||  ||||| ||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  14435947 agtaatcacaactttatggtgtcgtttgttatgaggtatgtaaataaggttgctcatagtattgctagagccgccttatctcctcctcgccc 14435856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 238 - 459
Target Start/End: Original strand, 30928091 - 30928301
Alignment:
Q  238 atggcatgcataatgttatatttgaaactgacagtagatccttggtgaatacactctactctactactactcccctaaataattttggagaccttgtgat 337  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||| | |||||||| ||||||||    
T  30928091 atggcatgcataatgttatatttgaaactgaaagtagatccttggtgaatacactctagtctactactactcccctcaatgaatttggagatcttgtgat 30928190  T
Q  338 tcaatgtaaaaatatcttgttaagtaatcatgactttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgcctta 437  Q
    ||||||||||||||||||           | |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  30928191 tcaatgtaaaaatatctt-----------acgactttgtggcgtcgtttgttaggaggcaaataaataaggttgctcatagtattgctagagccgcctta 30928279  T
Q  438 tctcatcctcgcccctttgttt 459  Q
    ||||||||||||||||||||||    
T  30928280 tctcatcctcgcccctttgttt 30928301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 118 - 264
Target Start/End: Original strand, 30927946 - 30928088
Alignment:
Q  118 tttcgagattcatttgggtagcttttacttgaaaaattagattacatgcaattttctgctactgttcttgaagtggaaaccattgggcagctagaagcta 217  Q
    |||||||||||||| ||| |||||||||||| ||||| | ||||||||||||||||||||||  |||||||||||||||| ||||||| |||||||||||    
T  30927946 tttcgagattcattagggcagcttttacttggaaaatcatattacatgcaattttctgctac--ttcttgaagtggaaactattgggctgctagaagcta 30928043  T
Q  218 tgaagatggcaataactccaatggcatgcataatgttatatttgaaa 264  Q
    |||||||||||||  |||||||||||||||||||||| | |||||||    
T  30928044 tgaagatggcaat--ctccaatggcatgcataatgttttttttgaaa 30928088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 363 - 452
Target Start/End: Complemental strand, 36757048 - 36756959
Alignment:
Q  363 aatcatgactttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatctcatcctcgcccc 452  Q
    |||||||||||||| ||||||||| || |||||||||  ||||| |||||||||||||||||||||||  ||||||| |||||| |||||    
T  36757048 aatcatgactttgtagtgtcgtttattcggaggcaagctaataaagttgctcatagtattgctagagcttccttatcacatcctagcccc 36756959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 369 - 430
Target Start/End: Original strand, 10748045 - 10748106
Alignment:
Q  369 gactttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagc 430  Q
    |||||||| ||||||| |||||||||||||| |||||  |||||||||| ||||||||||||    
T  10748045 gactttgtagtgtcgtatgttaggaggcaagcaaatagagttgctcataatattgctagagc 10748106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 369 - 430
Target Start/End: Complemental strand, 37670795 - 37670734
Alignment:
Q  369 gactttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagc 430  Q
    |||||||| ||||||| |||||| ||||||  |||||| |||| ||||||||||||||||||    
T  37670795 gactttgttgtgtcgtatgttagaaggcaaacaaataaagttgttcatagtattgctagagc 37670734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 378 - 439
Target Start/End: Complemental strand, 42700204 - 42700143
Alignment:
Q  378 gtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatc 439  Q
    ||||||||||||| |||||||  ||||| ||| |||||||||||||||||||| | ||||||    
T  42700204 gtgtcgtttgttatgaggcaaacaaatagggtagctcatagtattgctagagcggtcttatc 42700143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 430
Target Start/End: Original strand, 14786012 - 14786063
Alignment:
Q  379 tgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagc 430  Q
    |||||| |||||||||||||| ||||   |||||||||||||||||||||||    
T  14786012 tgtcgtatgttaggaggcaagcaaatggtgttgctcatagtattgctagagc 14786063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 451
Target Start/End: Complemental strand, 16468477 - 16468366
Alignment:
Q  340 aatgtaaaaatatcttgttaagtaatcatgactttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatc 439  Q
    ||||||||| | ||||||||||||| |  |||| ||| |||||||||||||||||| ||| ||| |  || |||||||  ||||||||||| ||  ||||    
T  16468477 aatgtaaaattctcttgttaagtaaccccgactatgtagtgtcgtttgttaggaggtaagcaaacagtgtagctcataacattgctagagctgctctatc 16468378  T
Q  440 tcatcctcgccc 451  Q
    | ||||| ||||    
T  16468377 taatcctagccc 16468366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 100; Significance: 3e-49; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 80 - 444
Target Start/End: Original strand, 55640875 - 55641236
Alignment:
Q  80 ttttcaacaacaattccatggtagggtatggcatgtgctttcgagattcatttgggtagcttttacttgaaaaattagattacatgcaattttctgctac 179  Q
    ||||||| |||||||| |   |||||||||| ||||||||| |||||||| | ||| | ||||||||||  |||| ||||||| ||| | |||| ||||     
T  55640875 ttttcaataacaattcaaccttagggtatggtatgtgctttagagattcactggggcaacttttacttggtaaatcagattacttgcgaatttccgctat 55640974  T
Q  180 tgttcttgaagtggaaaccattgggcagctagaagctatgaagatggcaataactccaatggcatgcataatgttatatttgaaactgacagtagatcct 279  Q
    |||||||||||||| |||||||||   ||||||||||||||||||||||||   | |||||| |||||| | |||||||||||||| |||| |||||| |    
T  55640975 tgttcttgaagtgggaaccattggattgctagaagctatgaagatggcaat--tttcaatggtatgcatgaagttatatttgaaacggacaatagatctt 55641072  T
Q  280 tggtgaatacactctactctactactactcccctaaataattttggagaccttgtgattcaatgtaaaaatatcttgttaagtaatcatgactttgtggt 379  Q
    | |  ||| |||| ||| |||||| ||||||| | ||| | |||  | ||||||||||||||||||||||||||  ||||| ||||||  | ||| ||||    
T  55641073 tagaaaatgcactatacactactaatactcccttcaatgaatttaaaaaccttgtgattcaatgtaaaaatatc--gttaactaatcacaattttatggt 55641170  T
Q  380 gtcgtttgttaggaggcaagtaaataaggttg-ctcatagtattgctagagccgccttatctcatc 444  Q
    | ||||| |||  |  ||||||||||||||||  ||||| |||||||||||| |||||||||||||    
T  55641171 gccgttttttaacatacaagtaaataaggttgtttcataatattgctagagctgccttatctcatc 55641236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 101 - 444
Target Start/End: Original strand, 42661259 - 42661597
Alignment:
Q  101 tagggtatggcatgtgctttcgagattcatttgggtagcttttacttgaaaaattagattacatgc-aattttctgctactgttcttgaagtggaaacca 199  Q
    |||||||||| ||||||||| |||||||||| ||| |  |||||||||  |||| | ||||| ||| ||||||| |||| ||||||||||||||||||||    
T  42661259 tagggtatggtatgtgctttagagattcattggggcaatttttacttggtaaatcaaattacttgcgaattttc-gctattgttcttgaagtggaaacca 42661357  T
Q  200 ttgggcagctagaagctatgaagatggcaataactccaatggcatgcataatgttatatttgaaactgacagtagatccttggtgaatacactctactct 299  Q
    ||||   |||||||||||| |||||||||||   | |||||| |||||| | |||||||||| ||| |||| |||||| || || ||| |||| ||| ||    
T  42661358 ttggattgctagaagctataaagatggcaat--tttcaatggtatgcatgaagttatatttg-aacggacactagatctttagtaaatgcactatacact 42661454  T
Q  300 actactactcccctaaataattttggagaccttgtgattcaatgtaaaaatatcttgttaagtaatcatgactttgtggtgtcgtttgttaggaggcaag 399  Q
    |||||||||||| | ||| | |||  | |||||||||||| |||||||||||||  | ||| ||||||  | ||||||||| ||||| |||  |  ||||    
T  42661455 actactactcccttcaatgaatttaaaaaccttgtgattccatgtaaaaatatc--gataactaatcacaattttgtggtgccgttttttaacatacaag 42661552  T
Q  400 taaataaggttgctcatagtattgctagagccgccttatctcatc 444  Q
    ||||||||||||||| || |||||||||||| |||||||||||||    
T  42661553 taaataaggttgctcgtaatattgctagagctgccttatctcatc 42661597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 370 - 452
Target Start/End: Complemental strand, 54421494 - 54421412
Alignment:
Q  370 actttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatctcatcctcgcccc 452  Q
    ||||||| ||||||||| || |||||||||  |||||||||| ||||||||||||||||||  ||||||| |||||| |||||    
T  54421494 actttgtagtgtcgtttattcggaggcaagctaataaggttggtcatagtattgctagagcttccttatcacatcctagcccc 54421412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 378 - 459
Target Start/End: Complemental strand, 38761461 - 38761380
Alignment:
Q  378 gtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatctcatcctcgcccctttgttt 459  Q
    ||||||||||||| || |||||  |||||||||||||||||||||||||||||  |||||||||| ||| ||| || |||||    
T  38761461 gtgtcgtttgttaagaagcaagctaataaggttgctcatagtattgctagagcatccttatctcaccctagcctctatgttt 38761380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 379 - 452
Target Start/End: Original strand, 43733915 - 43733988
Alignment:
Q  379 tgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatctcatcctcgcccc 452  Q
    |||||||| | | |||||||| ||||| ||| |||||||||||||||||||| ||||||||||||||| |||||    
T  43733915 tgtcgtttatcaagaggcaagcaaatatggtagctcatagtattgctagagctgccttatctcatcctagcccc 43733988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 378 - 430
Target Start/End: Original strand, 21257050 - 21257102
Alignment:
Q  378 gtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagc 430  Q
    ||||||||||||| ||||||||  |||||||||||||||||||||||||||||    
T  21257050 gtgtcgtttgttaagaggcaagctaataaggttgctcatagtattgctagagc 21257102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 369 - 430
Target Start/End: Complemental strand, 42327988 - 42327927
Alignment:
Q  369 gactttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagc 430  Q
    |||||||| ||||||| |||||||||||||| |||||  |||||||||| ||||||||||||    
T  42327988 gactttgtagtgtcgtatgttaggaggcaagcaaatagagttgctcataatattgctagagc 42327927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 369 - 452
Target Start/End: Original strand, 32499541 - 32499624
Alignment:
Q  369 gactttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatctcatcctcgcccc 452  Q
    |||||||  ||||||| |||||||||||||| |||||  |||||||||||||||||| ||||  |  ||||||||||| |||||    
T  32499541 gactttgcagtgtcgtatgttaggaggcaagcaaatagtgttgctcatagtattgctcgagcttcgctatctcatcctagcccc 32499624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 452
Target Start/End: Original strand, 3914758 - 3914841
Alignment:
Q  369 gactttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatctcatcctcgcccc 452  Q
    |||||||| ||||||| |||| || ||||| |||||||||||||| ||| |||||| |||||  | |||| ||||||| |||||    
T  3914758 gactttgtagtgtcgtatgtttgggggcaaataaataaggttgcttataatattgccagagcttctttatgtcatcctagcccc 3914841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 378 - 444
Target Start/End: Complemental strand, 5185557 - 5185491
Alignment:
Q  378 gtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatctcatc 444  Q
    ||||||| | ||||||| ||||  |||| ||||||||||||||| ||||||||  ||||||||||||    
T  5185557 gtgtcgtatattaggagacaagctaatagggttgctcatagtatagctagagcttccttatctcatc 5185491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 430
Target Start/End: Original strand, 1481027 - 1481087
Alignment:
Q  370 actttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagc 430  Q
    ||||||| ||||||| || ||||||||||| |||||  ||| |||||||||||| ||||||    
T  1481027 actttgtagtgtcgtatgataggaggcaagcaaatagagttactcatagtattgttagagc 1481087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 5e-20; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 378 - 452
Target Start/End: Complemental strand, 5896389 - 5896315
Alignment:
Q  378 gtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatctcatcctcgcccc 452  Q
    |||||||||||||||||||||| |||||  || |||||||||||||||||||| ||||||||||||||| |||||    
T  5896389 gtgtcgtttgttaggaggcaagaaaatatagtagctcatagtattgctagagctgccttatctcatcctagcccc 5896315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 378 - 459
Target Start/End: Complemental strand, 16484231 - 16484150
Alignment:
Q  378 gtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatctcatcctcgcccctttgttt 459  Q
    ||||||||||||| ||||||||  |||||||||||||||||||||||||||||  |||||||||| ||| | |||| |||||    
T  16484231 gtgtcgtttgttaagaggcaagctaataaggttgctcatagtattgctagagcatccttatctcaccctagtccctatgttt 16484150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 369 - 430
Target Start/End: Original strand, 11629495 - 11629556
Alignment:
Q  369 gactttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagc 430  Q
    |||||||| ||||||| |||||||||||||| |||||  |||||||||||||||||||||||    
T  11629495 gactttgtagtgtcgtatgttaggaggcaagcaaatagagttgctcatagtattgctagagc 11629556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 369 - 430
Target Start/End: Complemental strand, 9180816 - 9180755
Alignment:
Q  369 gactttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagc 430  Q
    |||||||| ||||||| |||||||||||||| |||||  |||||||||| ||||||||||||    
T  9180816 gactttgtagtgtcgtatgttaggaggcaagcaaatagagttgctcataatattgctagagc 9180755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 369 - 430
Target Start/End: Complemental strand, 34752775 - 34752714
Alignment:
Q  369 gactttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagc 430  Q
    |||||||| ||||||| |||||||||||||| |||||   ||||||||||||||||||||||    
T  34752775 gactttgtagtgtcgtatgttaggaggcaagcaaatagaattgctcatagtattgctagagc 34752714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 305 - 446
Target Start/End: Original strand, 5645219 - 5645360
Alignment:
Q  305 tactcccctaaataattttggagaccttgtgattcaatgtaaaaatatcttgttaagtaatcatgactttgtggtgtcgtttgttaggaggcaagtaaat 404  Q
    |||||| || ||||| ||||| ||||||||| |||||||||||    | ||||||||||| |  || ||||| |||||||||||| | ||| ||| ||||    
T  5645219 tactcctcttaataaatttggggaccttgtgcttcaatgtaaatcattattgttaagtaaccccgattttgtcgtgtcgtttgttcgaaggtaagcaaat 5645318  T
Q  405 aaggttgctcatagtattgctagagccgccttatctcatcct 446  Q
    ||| ||||||||||||||  |||||| | |||||||||||||    
T  5645319 aagattgctcatagtattattagagctgtcttatctcatcct 5645360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 371 - 446
Target Start/End: Original strand, 31802462 - 31802537
Alignment:
Q  371 ctttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatctcatcct 446  Q
    |||||| ||||||| |||| |||||||||  |||||||||||||||||||||||||||||  |||||| |||||||    
T  31802462 ctttgtagtgtcgtatgttcggaggcaagctaataaggttgctcatagtattgctagagcttccttatgtcatcct 31802537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 369 - 446
Target Start/End: Original strand, 513847 - 513924
Alignment:
Q  369 gactttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatctcatcct 446  Q
    |||||||| ||||||| |||| |||||||||  |||| ||||||||||||||||||||||||  |||||| |||||||    
T  513847 gactttgtagtgtcgtatgtttggaggcaagctaatagggttgctcatagtattgctagagcttccttatgtcatcct 513924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 378 - 459
Target Start/End: Complemental strand, 27745807 - 27745726
Alignment:
Q  378 gtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatctcatcctcgcccctttgttt 459  Q
    ||||||||||||| |||| |||  |||||||||||||||||||| ||||||||  |||||||||| ||| |||||| |||||    
T  27745807 gtgtcgtttgttaagaggtaagctaataaggttgctcatagtatcgctagagcatccttatctcaccctagcccctatgttt 27745726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 385 - 453
Target Start/End: Complemental strand, 18221539 - 18221471
Alignment:
Q  385 ttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatctcatcctcgcccct 453  Q
    |||||| ||||||||  |||||||||||||||| ||||||||||||  |||||||||| ||| ||||||    
T  18221539 ttgttaagaggcaagctaataaggttgctcatactattgctagagcatccttatctcaccctagcccct 18221471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 369 - 452
Target Start/End: Original strand, 41147749 - 41147832
Alignment:
Q  369 gactttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatctcatcctcgcccc 452  Q
    |||||||  ||||||| |||||||||||||| |||||  |||||||||||||||||| ||||  |  ||||||||||| |||||    
T  41147749 gactttgcagtgtcgtatgttaggaggcaagcaaatagtgttgctcatagtattgctcgagcttcgctatctcatcctagcccc 41147832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 393 - 452
Target Start/End: Original strand, 43970061 - 43970120
Alignment:
Q  393 aggcaagtaaataaggttgctcatagtattgctagagccgccttatctcatcctcgcccc 452  Q
    ||||||| ||||||||||||||||||||||||||||||  |||||||  ||||| |||||    
T  43970061 aggcaagcaaataaggttgctcatagtattgctagagcgtccttatccaatcctagcccc 43970120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 381 - 439
Target Start/End: Original strand, 36422696 - 36422754
Alignment:
Q  381 tcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatc 439  Q
    ||||||||| ||||||||||||||||||| | |||| ||||| ||||||||| ||||||    
T  36422696 tcgtttgtttggaggcaagtaaataaggtagatcatggtatttctagagccgtcttatc 36422754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 369 - 439
Target Start/End: Original strand, 41605363 - 41605433
Alignment:
Q  369 gactttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatc 439  Q
    |||||||| ||||||| ||||  |||| | | ||||||||||||||||||||||||||||||  |||||||    
T  41605363 gactttgtagtgtcgtatgtttagaggtaggcaaataaggttgctcatagtattgctagagcgtccttatc 41605433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 369 - 446
Target Start/End: Complemental strand, 12350822 - 12350745
Alignment:
Q  369 gactttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatctcatcct 446  Q
    |||||||  ||||||| |||||||||||||| |||||  |||||||||||||||||| ||||  |  |||||||||||    
T  12350822 gactttgcagtgtcgtatgttaggaggcaagcaaatattgttgctcatagtattgctcgagcttcgctatctcatcct 12350745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 340 - 405
Target Start/End: Complemental strand, 43203592 - 43203527
Alignment:
Q  340 aatgtaaaaatatcttgttaagtaatcatgactttgtggtgtcgtttgttaggaggcaagtaaata 405  Q
    ||||||||| | ||||||||||||| |  |||| ||| |||||||||||||||||||||| |||||    
T  43203592 aatgtaaaactctcttgttaagtaaccccgactatgtagtgtcgtttgttaggaggcaagcaaata 43203527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 378 - 459
Target Start/End: Complemental strand, 27643446 - 27643365
Alignment:
Q  378 gtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatctcatcctcgcccctttgttt 459  Q
    ||||||||||||| ||||||||  |||||||||||||||||||||||||||||  |||||||||| ||| | |||| |||||    
T  27643446 gtgtcgtttgttaagaggcaagctaataaggttgctcatagtattgctagagcatccttatctcaccctagtccctatgttt 27643365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 369 - 452
Target Start/End: Complemental strand, 33978268 - 33978185
Alignment:
Q  369 gactttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatctcatcctcgcccc 452  Q
    |||||||| ||||| | |||| |||||||||  |||| ||||||||||||||||||||||||  |||||| ||||||| |||||    
T  33978268 gactttgtagtgtcatatgttcggaggcaagctaatagggttgctcatagtattgctagagcttccttatgtcatcctagcccc 33978185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 378 - 452
Target Start/End: Original strand, 28037649 - 28037723
Alignment:
Q  378 gtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatctcatcctcgcccc 452  Q
    ||||||| | ||||||||||||| |||| ||||||||||||||| ||||||||  | |||||||||||| |||||    
T  28037649 gtgtcgtatattaggaggcaagttaatagggttgctcatagtatagctagagcttctttatctcatcctagcccc 28037723  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 369 - 430
Target Start/End: Original strand, 39501120 - 39501181
Alignment:
Q  369 gactttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagc 430  Q
    |||||||| ||||||| |||||||||||||| |||||  |||||| ||||||||||||||||    
T  39501120 gactttgtagtgtcgtatgttaggaggcaagcaaatagagttgcttatagtattgctagagc 39501181  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 367 - 430
Target Start/End: Original strand, 38599020 - 38599083
Alignment:
Q  367 atgactttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagc 430  Q
    |||||||||  ||||| | ||||||||||||||  ||||| |||||||||||||||||||||||    
T  38599020 atgactttgatgtgtcatatgttaggaggcaagataataaagttgctcatagtattgctagagc 38599083  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 374 - 452
Target Start/End: Original strand, 7386664 - 7386742
Alignment:
Q  374 tgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatctcatcctcgcccc 452  Q
    |||||| |||||||||  |||||||| |||||| || |||||||| |||||||||||| | |||||| ||||| |||||    
T  7386664 tgtggtatcgtttgttccgaggcaagcaaataaagtagctcatagcattgctagagcctctttatctaatcctagcccc 7386742  T

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Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 430
Target Start/End: Original strand, 23809444 - 23809534
Alignment:
Q  340 aatgtaaaaatatcttgttaagtaatcatgactttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagc 430  Q
    ||||||||| | ||||||||||||||   |||| ||| |||||||||||||||||||||| |||||  || |||||||  ||||| |||||    
T  23809444 aatgtaaaactctcttgttaagtaattccgactatgtagtgtcgtttgttaggaggcaagcaaatagtgtggctcataacattgcaagagc 23809534  T

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Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 380 - 428
Target Start/End: Complemental strand, 15846254 - 15846206
Alignment:
Q  380 gtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctaga 428  Q
    ||||||||||| ||||||||| || |||||| |||||||||||||||||    
T  15846254 gtcgtttgttaagaggcaagttaacaaggtttctcatagtattgctaga 15846206  T

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Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 380 - 428
Target Start/End: Complemental strand, 15849638 - 15849590
Alignment:
Q  380 gtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctaga 428  Q
    ||||||||||| ||||||||| || |||||| |||||||||||||||||    
T  15849638 gtcgtttgttaagaggcaagttaacaaggtttctcatagtattgctaga 15849590  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 430
Target Start/End: Original strand, 44139697 - 44139787
Alignment:
Q  340 aatgtaaaaatatcttgttaagtaatcatgactttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagc 430  Q
    ||||||||| | ||||||||| |||||  |||| | | |||||||||||||||||||||| |||||  || |||||||  ||||| |||||    
T  44139697 aatgtaaaactctcttgttaaataatcccgactatatagtgtcgtttgttaggaggcaagcaaatagtgtggctcataacattgcaagagc 44139787  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 430
Target Start/End: Original strand, 14650988 - 14651049
Alignment:
Q  369 gactttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagc 430  Q
    |||||||| ||||||||  || ||||||||| |||||||||||| ||||| || ||||||||    
T  14650988 gactttgtagtgtcgttcattcggaggcaagcaaataaggttgcacatagcatagctagagc 14651049  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 430
Target Start/End: Original strand, 14660779 - 14660840
Alignment:
Q  369 gactttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagc 430  Q
    |||||||| ||||||||  || ||||||||| |||||||||||| ||||| || ||||||||    
T  14660779 gactttgtagtgtcgttcattcggaggcaagcaaataaggttgcacatagcatagctagagc 14660840  T

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Target: scaffold0996 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0996
Description:

Target: scaffold0996; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 369 - 452
Target Start/End: Complemental strand, 1634 - 1551
Alignment:
Q  369 gactttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatctcatcctcgcccc 452  Q
    |||||||| ||||||| |||| |||||||||  |||| ||||||||||||||||||||||||  |||||| ||||||| |||||    
T  1634 gactttgtagtgtcgtatgttcggaggcaagctaatagggttgctcatagtattgctagagcttccttatgtcatcctagcccc 1551  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 369 - 439
Target Start/End: Complemental strand, 13021006 - 13020936
Alignment:
Q  369 gactttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatc 439  Q
    |||||||| ||||||| |||| ||||||||| ||||||||||||| ||||||||||||||||  |||||||    
T  13021006 gactttgtagtgtcgtatgttcggaggcaagcaaataaggttgcttatagtattgctagagcgtccttatc 13020936  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 369 - 430
Target Start/End: Complemental strand, 13092530 - 13092469
Alignment:
Q  369 gactttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagc 430  Q
    |||||||| ||||||| |||| ||||||||| ||||||||||||| ||||||||||||||||    
T  13092530 gactttgtagtgtcgtatgttcggaggcaagcaaataaggttgcttatagtattgctagagc 13092469  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 369 - 452
Target Start/End: Original strand, 23151264 - 23151347
Alignment:
Q  369 gactttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatctcatcctcgcccc 452  Q
    |||||||  ||||||| |||||||||||||| |||||  |||||||||||||||||| ||||  |  ||||||||||| |||||    
T  23151264 gactttgcagtgtcgtatgttaggaggcaagcaaatagtgttgctcatagtattgctcgagcttcgctatctcatcctagcccc 23151347  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 378 - 452
Target Start/End: Original strand, 28499180 - 28499254
Alignment:
Q  378 gtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatctcatcctcgcccc 452  Q
    ||||||| |||||||||||||| |||||  |||||||||||||||||| ||||  |  ||||||||||| |||||    
T  28499180 gtgtcgtatgttaggaggcaagcaaatagtgttgctcatagtattgctcgagcttcgctatctcatcctagcccc 28499254  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 352 - 429
Target Start/End: Original strand, 7274511 - 7274588
Alignment:
Q  352 tcttgttaagtaatcatgactttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagag 429  Q
    |||||||||||||||  |||| ||| ||||||||| |||||||||||| |||||  || ||||||| |||||| ||||    
T  7274511 tcttgttaagtaatcccgactatgtagtgtcgtttattaggaggcaagaaaatagtgtggctcataatattgcgagag 7274588  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 391 - 452
Target Start/End: Complemental strand, 10813209 - 10813148
Alignment:
Q  391 ggaggcaagtaaataaggttgctcatagtattgctagagccgccttatctcatcctcgcccc 452  Q
    |||||||||  |||| ||||||||||||||| ||||||||  |||||||||||||| |||||    
T  10813209 ggaggcaagctaatagggttgctcatagtatagctagagcttccttatctcatcctagcccc 10813148  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 369 - 430
Target Start/End: Complemental strand, 10159040 - 10158979
Alignment:
Q  369 gactttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagc 430  Q
    |||||||| ||||||| |||||||||||||| |||||  |||||||||| ||||||||||||    
T  10159040 gactttgtagtgtcgtatgttaggaggcaagcaaatagagttgctcataatattgctagagc 10158979  T

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Target: scaffold0024 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 371 - 430
Target Start/End: Complemental strand, 69138 - 69079
Alignment:
Q  371 ctttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagc 430  Q
    |||||| ||||||| ||||||||| |||| |||||| |||||||||||||| ||||||||    
T  69138 ctttgttgtgtcgtgtgttaggagacaagcaaataaagttgctcatagtatcgctagagc 69079  T

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Target: scaffold0067 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 452
Target Start/End: Complemental strand, 11070 - 10987
Alignment:
Q  369 gactttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatctcatcctcgcccc 452  Q
    |||||||  ||||||| |||||||||||||| |||||  ||||||| |||||||||| ||||  |  ||||||||||| |||||    
T  11070 gactttgcagtgtcgtatgttaggaggcaagcaaatagtgttgctcgtagtattgctcgagcttcgctatctcatcctagcccc 10987  T

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Target: scaffold0007 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 369 - 431
Target Start/End: Complemental strand, 188466 - 188404
Alignment:
Q  369 gactttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagcc 431  Q
    |||||||| || |||| | ||||||| ||||||||||  |||||||||| |||||||||||||    
T  188466 gactttgtagtatcgtatattaggagacaagtaaatagagttgctcataatattgctagagcc 188404  T

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