View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0749_low_10 (Length: 513)
Name: NF0749_low_10
Description: NF0749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0749_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 78 - 474
Target Start/End: Complemental strand, 35730196 - 35729803
Alignment:
| Q |
78 |
tcaaactccacttttatctgtttgtgtaataaagcgtcaactccacttcaatactttattttattattggattgaattacgtacttttagaaatggagta |
177 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
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| T |
35730196 |
tcaaactccacttttatctgtttgtgtaataaagcgtcaactccacttcaatactttattttattattggattgaatcacgtacttttagaaatagagta |
35730097 |
T |
|
| Q |
178 |
tatcttttgagttattactataaataagataaaacgtgaattaataatcaaactgtattaaaatgattcgttgaattaaaacactcaaacttggaaacgc |
277 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35730096 |
tatcttttgagttattactataaattagataaaacgtgaattaataatcaaactatattaaaatgattcgttgaattaaaacactcaaacttggaaacgc |
35729997 |
T |
|
| Q |
278 |
agtcagcgccagtttacttactttagttgttttgcactatttgttccccgtacgtttctgtttcctttcattatcatcatctatctattctatccttcct |
377 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
35729996 |
agtcagcgccagtttacttactttagttgttttgcactatttgttccccgtacgtttctgtttcctttcattatcatta---------tctatccttcct |
35729906 |
T |
|
| Q |
378 |
ttcattgnnnnnnnnnnnnatttggtt------ctacttgcttataatttgtttggaccaggttgttctaataaatagtactagtgtttatatctgttct |
471 |
Q |
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||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35729905 |
ttcattgttttttgtttttatttggttgtactactacttgcttataatttgtttggaccaggttgttctaataaatagtactagtgtttatatctgttct |
35729806 |
T |
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