View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0749_low_14 (Length: 384)
Name: NF0749_low_14
Description: NF0749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0749_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 317; Significance: 1e-179; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 30 - 362
Target Start/End: Original strand, 4370729 - 4371061
Alignment:
| Q |
30 |
acttgattcaccaatccttctggtgaacaattagcatggccaggttgttcattatccttcatttccatgcatgtgaaatttagtataactccatgttttg |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
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| T |
4370729 |
acttgattcaccaatccttctggtgaacaattagcatggccaggttgttcattatccttcatttccatgcatgtgaaattcaatataactccatgttttg |
4370828 |
T |
|
| Q |
130 |
caagcatttgtgctattggtatataaccatcatgaaaccttgtgttatagtaacctgcagttaattcagttgcatgtgatcttgcattgtaatgccaatg |
229 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4370829 |
ctagcatttgtgctattggtatataaccatcatgaaaccttgtgttatagtaacctgcagttaattcagttgcatgtgatcttgcattgtaatgccaatg |
4370928 |
T |
|
| Q |
230 |
aattccagctattttggcagatagtttcactccacttgtttggaatatgcttttagctgatacaagaattttctcaccatgttcaacaagtttgcttgag |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
4370929 |
aattccagctattttggcagatagtttcactccacttgtttggaatatgcttttagctgatacaagaattttctcaccatgttcaacaagcttgcttgag |
4371028 |
T |
|
| Q |
330 |
taccaatcaaggaagaaatctccatattctgtg |
362 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
4371029 |
taccaatcaaggaagaaatctccatattctgtg |
4371061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 30 - 362
Target Start/End: Original strand, 4362926 - 4363258
Alignment:
| Q |
30 |
acttgattcaccaatccttctggtgaacaattagcatggccaggttgttcattatccttcatttccatgcatgtgaaatttagtataactccatgttttg |
129 |
Q |
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|||||||| ||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
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| T |
4362926 |
acttgatttaccaatccttctggtgaacaatttgcatcacaaggttgttcattatccttcatttccatgcatgtgaaattcaatataactccatgttttg |
4363025 |
T |
|
| Q |
130 |
caagcatttgtgctattggtatataaccatcatgaaaccttgtgttatagtaacctgcagttaattcagttgcatgtgatcttgcattgtaatgccaatg |
229 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4363026 |
ctagcatttgtgctattggtatataaccatcatgaaactttgtgttatagtaacctgcagttaattcagttgcatgtgatcttgcattgtaatgccaatg |
4363125 |
T |
|
| Q |
230 |
aattccagctattttggcagatagtttcactccacttgtttggaatatgcttttagctgatacaagaattttctcaccatgttcaacaagtttgcttgag |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
4363126 |
aattccagctattttggcagatagtttcactccacttgtttggaatatgcttttagctgatacaagaattttctcaccatgttcaacaagcttgcttgag |
4363225 |
T |
|
| Q |
330 |
taccaatcaaggaagaaatctccatattctgtg |
362 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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|
| T |
4363226 |
taccaatcaaggaagaaatctccatattctgtg |
4363258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 45 - 295
Target Start/End: Complemental strand, 41044112 - 41043862
Alignment:
| Q |
45 |
ccttctggtgaacaattagcatggccaggttgttcattatccttcatttccatgcatgtgaaatttagtataactccatgttttgcaagcatttgtgcta |
144 |
Q |
| |
|
|||||||| ||||| |||||||| ||||||||||| | || |||||||||||||| |||||||| | | ||| |||| ||||||| ||||| || | |
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| T |
41044112 |
ccttctggcgaacagttagcatgtccaggttgttctctgtctttcatttccatgcaggtgaaattgaagacaacgtcatggtttgcaaacattttggcaa |
41044013 |
T |
|
| Q |
145 |
ttggtatataaccatcatgaaaccttgtgttatagtaacctgcagttaattcagttgcatgtgatcttgcattgtaatgccaatgaattccagctatttt |
244 |
Q |
| |
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|||| | ||| ||||||| | || |||||||||||||| ||||||| ||||| ||| || || |||| ||||||||||||| ||||| || | ||| |
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| T |
41044012 |
ttggaagatacccatcattatgtctagtgttatagtaaccagcagttagttcagctgcgtgcgaccttgatctgtaatgccaatggattcccgcaacttt |
41043913 |
T |
|
| Q |
245 |
ggcagatagtttcactccacttgtttggaatatgcttttagctgatacaag |
295 |
Q |
| |
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||||||||||||| ||| ||| |||||||| ||| ||||||||||| |
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| T |
41043912 |
accagatagtttcacaccagatgtctggaatatttctttggctgatacaag |
41043862 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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