View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0749_low_17 (Length: 384)
Name: NF0749_low_17
Description: NF0749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0749_low_17 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 7 - 323
Target Start/End: Complemental strand, 26970014 - 26969698
Alignment:
| Q |
7 |
tcgaataatatataaccttgagcactagcacaattcgtatatttatatatgggaagttgtcacttatatataggttctatactctacaacaaaacttagt |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26970014 |
tcgaataatatataaccttgagcactagcacaattcgtatatttatatatgggaagttgtcacttatatataggttctatactctacaacaaaacttagt |
26969915 |
T |
|
| Q |
107 |
aaacaagctcatttcatttcaatcttatcttactagaaaagaaaaacacaacaaaaactaaagctacattaattcttcttcttcaaatggcatcaaaaca |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
26969914 |
aaacaagctcatttcatttcaatcttatcttactagaaaagaaacacacaacaaaaactaaagctacattaattcttcttcttcaaatgggatcaaaaca |
26969815 |
T |
|
| Q |
207 |
accaagacacgttgaag-aaatcagtgtaacaaaagaacaacatgatcaagagaagcccggtgtaattggatcagtgatgaaggctgttcaggacaccta |
305 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
26969814 |
accaagacacgttgaagaaaatcagt-taacaaaagaacaacatgatcaagagaagcccggtgtaattggttcagtgatgaaggctgttcatgacaccta |
26969716 |
T |
|
| Q |
306 |
cgagaatgcaagagaagc |
323 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
26969715 |
cgagaatgcaagagaagc |
26969698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 4158 times since January 2019
Visitors: 4829