View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0749_low_18 (Length: 384)
Name: NF0749_low_18
Description: NF0749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0749_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 83 - 372
Target Start/End: Original strand, 36944842 - 36945121
Alignment:
| Q |
83 |
cttccttaaacgttgtctcatcaaatcataaaactaatttttcttgtcaaattctaatcacatattaattcatttgcaaacagtacttcatccttgcagt |
182 |
Q |
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| T |
36944842 |
cttccttaaatgttgtctcatcaaatcataaaactaatttttcttgtcaaattccaaccacat------tcatttgcaaacagtacttcatccttgcagt |
36944935 |
T |
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| Q |
183 |
ttagttcacctgaatgtctatgaccgttgaccataaaatggataggaagttacctcattgtttcaccaactaacatctagaatgttgaattctgcatttt |
282 |
Q |
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| T |
36944936 |
taagttcacctgaatgtctatgactgttgaccataaaatggacagaaagttacctcattgtttcaccaactaacatctagcatgttgaattctatatttt |
36945035 |
T |
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| Q |
283 |
gaaaatctccaatatgtatgtatctaacaacctttactcacaaatcaaacacacacactacaagtgactcacctacctacctttcatatt |
372 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36945036 |
gaaaatctccaa----tatgtatctaacaacctttactcacaaatcaaacacacacactacaagtgactcacctacctacctttcatatt |
36945121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 86 - 333
Target Start/End: Original strand, 36941696 - 36941946
Alignment:
| Q |
86 |
ccttaaacgttgtctcatcaaatcataaaactaatttttctt--gtcaaattctaatcacatattaattcatttgcaaacagtacttcatccttgcagtt |
183 |
Q |
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||||||| ||||||||||||||||||||||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
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| T |
36941696 |
ccttaaatgttgtctcatcaaatcataaaactaattttttttttgtcaaattctaaccacatattaattcatttgcaaacagtacttcatccttggagtt |
36941795 |
T |
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| Q |
184 |
tagttcacctgaatgtctatgaccgttgaccataaaatggataggaagttacctcattgtttcacc-aactaacatctagaatgttgaattctgcatttt |
282 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
36941796 |
aagttcacctgaatgtctatgaccgttgaccataaaatggatagaaagttacctcattgtttcaccaaactaacatctagaatgttgaattctgcatttt |
36941895 |
T |
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| Q |
283 |
gaaaatctccaatatgtatgtatctaacaacctttactcacaaatcaaaca |
333 |
Q |
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| T |
36941896 |
gaaaatctccaattaatatgtatctaacaacctttactcacaaatcaaaca |
36941946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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