View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0749_low_2 (Length: 620)

Name: NF0749_low_2
Description: NF0749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0749_low_2
NF0749_low_2
[»] chr8 (10 HSPs)
chr8 (322-445)||(39065466-39065583)
chr8 (194-270)||(39065635-39065712)
chr8 (322-406)||(39209327-39209413)
chr8 (322-380)||(28462534-28462593)
chr8 (322-372)||(39534137-39534187)
chr8 (122-156)||(39065754-39065788)
chr8 (330-379)||(13873769-13873818)
chr8 (327-380)||(41675662-41675715)
chr8 (329-373)||(41726967-41727011)
chr8 (329-381)||(44648928-44648980)
[»] chr3 (11 HSPs)
chr3 (322-408)||(15671079-15671166)
chr3 (322-410)||(44291197-44291279)
chr3 (322-382)||(42163595-42163656)
chr3 (322-380)||(44041315-44041374)
chr3 (329-376)||(49711015-49711062)
chr3 (323-370)||(43652470-43652517)
chr3 (322-372)||(23208143-23208194)
chr3 (325-378)||(27144066-27144120)
chr3 (322-371)||(43014711-43014761)
chr3 (322-352)||(43863005-43863035)
chr3 (325-380)||(17109525-17109581)
[»] scaffold1372 (1 HSPs)
scaffold1372 (322-382)||(1260-1320)
[»] chr1 (15 HSPs)
chr1 (322-382)||(48282880-48282940)
chr1 (322-377)||(20471326-20471381)
chr1 (322-377)||(20560156-20560211)
chr1 (322-376)||(30627610-30627664)
chr1 (328-377)||(33827818-33827868)
chr1 (328-377)||(33840097-33840147)
chr1 (326-378)||(31884453-31884505)
chr1 (323-358)||(50127361-50127396)
chr1 (327-373)||(18786447-18786493)
chr1 (322-379)||(40391209-40391267)
chr1 (330-371)||(34347227-34347268)
chr1 (323-375)||(50468802-50468855)
chr1 (322-382)||(19066924-19066984)
chr1 (322-382)||(19114814-19114874)
chr1 (322-373)||(26855824-26855876)
[»] chr7 (6 HSPs)
chr7 (322-381)||(22035796-22035856)
chr7 (322-370)||(41434765-41434813)
chr7 (322-382)||(45907023-45907083)
chr7 (323-378)||(16861742-16861797)
chr7 (329-382)||(27364663-27364717)
chr7 (330-379)||(34993090-34993139)
[»] chr5 (8 HSPs)
chr5 (322-381)||(14863400-14863459)
chr5 (327-382)||(7609529-7609584)
chr5 (322-379)||(2611140-2611198)
chr5 (322-373)||(11320189-11320240)
chr5 (322-380)||(12187247-12187305)
chr5 (322-382)||(35185319-35185380)
chr5 (328-382)||(18677915-18677970)
chr5 (322-373)||(21052626-21052677)
[»] chr6 (3 HSPs)
chr6 (322-378)||(17506330-17506386)
chr6 (322-375)||(21809802-21809855)
chr6 (326-370)||(4803224-4803268)
[»] chr4 (9 HSPs)
chr4 (322-381)||(19147138-19147197)
chr4 (322-377)||(47397669-47397724)
chr4 (329-376)||(16004449-16004496)
chr4 (322-375)||(31241947-31242001)
chr4 (322-376)||(31647785-31647839)
chr4 (322-378)||(38319533-38319590)
chr4 (322-365)||(38320124-38320168)
chr4 (363-409)||(48743577-48743622)
chr4 (322-366)||(20542600-20542644)
[»] scaffold0034 (1 HSPs)
scaffold0034 (322-382)||(22413-22473)
[»] chr2 (5 HSPs)
chr2 (329-380)||(40574134-40574185)
chr2 (327-376)||(23760588-23760637)
chr2 (322-376)||(18243299-18243354)
chr2 (330-382)||(19889817-19889870)
chr2 (363-420)||(31807729-31807785)
[»] scaffold0006 (1 HSPs)
scaffold0006 (323-381)||(38866-38924)
[»] scaffold0078 (1 HSPs)
scaffold0078 (327-371)||(861-906)
[»] scaffold0117 (1 HSPs)
scaffold0117 (322-363)||(16838-16879)
[»] scaffold0886 (1 HSPs)
scaffold0886 (322-382)||(1094-1154)


Alignment Details
Target: chr8 (Bit Score: 66; Significance: 7e-29; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 322 - 445
Target Start/End: Complemental strand, 39065583 - 39065466
Alignment:
Q  322 gtgacagtttatatttccaagacagaaattatatttatagattccttaaccagtgccccggccccggggcactggtcaacaagaccc-ttgttttttaac 420  Q
    ||||||||||||||||  |||||||||||| ||||||||||  ||||||||||||||||     ||  ||||||||||||||||||| ||||||||||||    
T  39065583 gtgacagtttatatttttaagacagaaattctatttataga--ccttaaccagtgcccc-----cgaagcactggtcaacaagaccccttgttttttaac 39065491  T
Q  421 tagtgtatcagggatgtgagttaac 445  Q
    |||||||||||||||||||||||||    
T  39065490 tagtgtatcagggatgtgagttaac 39065466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 194 - 270
Target Start/End: Complemental strand, 39065712 - 39065635
Alignment:
Q  194 aattgttgattacacaagttctaatttatt-ttaatggagaatgctaactagtgcctctggagcattggttaagcact 270  Q
    |||||||||||||| |||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||    
T  39065712 aattgttgattacataagttctaattttttattattggagaatgctaactagtgcctctggagcattggttaagcact 39065635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 322 - 406
Target Start/End: Complemental strand, 39209413 - 39209327
Alignment:
Q  322 gtgacagtttatatttccaagacag-aaattatatttatagattccttaaccagtgcc-ccggccccggggcactggtcaacaagac 406  Q
    |||||||||||||||||||| |||| ||||| |||||||| |||||||||| |||||| ||| ||| || |||||||| ||||||||    
T  39209413 gtgacagtttatatttccaaaacagaaaattctatttataaattccttaactagtgccaccgtcccaggagcactggttaacaagac 39209327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 322 - 380
Target Start/End: Complemental strand, 28462593 - 28462534
Alignment:
Q  322 gtgacagtttatatttccaagacagaaa-ttatatttatagattccttaaccagtgcccc 380  Q
    |||| ||||||||||||||||||| ||| || ||||||||||||| ||||||||||||||    
T  28462593 gtgatagtttatatttccaagacaaaaaattctatttatagattctttaaccagtgcccc 28462534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 322 - 372
Target Start/End: Complemental strand, 39534187 - 39534137
Alignment:
Q  322 gtgacagtttatatttccaagacagaaattatatttatagattccttaacc 372  Q
    |||||||||||||||| ||||||||||||| || |||||||||| ||||||    
T  39534187 gtgacagtttatattttcaagacagaaattctaattatagattctttaacc 39534137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 122 - 156
Target Start/End: Complemental strand, 39065788 - 39065754
Alignment:
Q  122 tcaactagtgttcttgaaacattggttgagaaaac 156  Q
    |||||||||||||||| ||||||||||||||||||    
T  39065788 tcaactagtgttcttggaacattggttgagaaaac 39065754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 379
Target Start/End: Original strand, 13873769 - 13873818
Alignment:
Q  330 ttatatttccaagacagaaattatatttatagattccttaaccagtgccc 379  Q
    ||||||||| |||||| ||||| |||||||||||||||||| || |||||    
T  13873769 ttatatttctaagacaaaaattttatttatagattccttaatcattgccc 13873818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 380
Target Start/End: Complemental strand, 41675715 - 41675662
Alignment:
Q  327 agtttatatttccaagacagaaattatatttatagattccttaaccagtgcccc 380  Q
    ||||||||||| ||| ||||||||| ||||| |||||||||||| | |||||||    
T  41675715 agtttatattttcaaaacagaaattctatttgtagattccttaatcggtgcccc 41675662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 329 - 373
Target Start/End: Original strand, 41726967 - 41727011
Alignment:
Q  329 tttatatttccaagacagaaattatatttatagattccttaacca 373  Q
    ||||||||||||||||| || || ||||| |||||||||||||||    
T  41726967 tttatatttccaagacaaaatttttatttgtagattccttaacca 41727011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 329 - 381
Target Start/End: Complemental strand, 44648980 - 44648928
Alignment:
Q  329 tttatatttccaagacagaaattatatttatagattccttaaccagtgccccg 381  Q
    ||||||||| ||||||| || || ||||| ||||||||||||||| |||||||    
T  44648980 tttatattttcaagacaaaatttctatttgtagattccttaaccattgccccg 44648928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 3e-25; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 322 - 408
Target Start/End: Complemental strand, 15671166 - 15671079
Alignment:
Q  322 gtgacagtttatatttccaagacagaaattatatttatagattccttaaccagtgccccggcccc-ggggcactggtcaacaagaccc 408  Q
    ||||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||    
T  15671166 gtgacagtttatatttcgaagacaaaaattttatttatagattccttaaccagtgcccccgccccgggggcactggttaacaagaccc 15671079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 322 - 410
Target Start/End: Complemental strand, 44291279 - 44291197
Alignment:
Q  322 gtgacagtttatatttccaagacagaaattatatttatagattccttaaccagtgccccggccccggggcactggtcaacaagaccctt 410  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||      ||||||||||||| ||||||||||||    
T  44291279 gtgacagtttatatttccaagacagaaattctatttatagattccttaaccagtgcc------ccggggcactggttaacaagaccctt 44291197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 322 - 382
Target Start/End: Complemental strand, 42163656 - 42163595
Alignment:
Q  322 gtgacagtttatatttccaagacagaaa-ttatatttatagattccttaaccagtgccccgg 382  Q
    ||||| |||||||||||||||||||||| || |||| |||||||||||||||||||||||||    
T  42163656 gtgacggtttatatttccaagacagaaaattctattaatagattccttaaccagtgccccgg 42163595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 322 - 380
Target Start/End: Complemental strand, 44041374 - 44041315
Alignment:
Q  322 gtgacagtttatatttccaagacagaaa-ttatatttatagattccttaaccagtgcccc 380  Q
    ||||||||||||||| |||||||||||| || ||||||||||||| ||||||||||||||    
T  44041374 gtgacagtttatattaccaagacagaaaattctatttatagattcattaaccagtgcccc 44041315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 329 - 376
Target Start/End: Original strand, 49711015 - 49711062
Alignment:
Q  329 tttatatttccaagacagaaattatatttatagattccttaaccagtg 376  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||||    
T  49711015 tttatatttctaagacagaaattctatttatagattccttaaccagtg 49711062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 323 - 370
Target Start/End: Complemental strand, 43652517 - 43652470
Alignment:
Q  323 tgacagtttatatttccaagacagaaattatatttatagattccttaa 370  Q
    |||||| |||||||||||||| ||||||| ||||||||||||||||||    
T  43652517 tgacagattatatttccaagatagaaattttatttatagattccttaa 43652470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 322 - 372
Target Start/End: Complemental strand, 23208194 - 23208143
Alignment:
Q  322 gtgacagtttatatttccaagacag-aaattatatttatagattccttaacc 372  Q
    |||||||||||||||| |||||||| ||||| |||||||||||| |||||||    
T  23208194 gtgacagtttatattttcaagacagaaaattctatttatagatttcttaacc 23208143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 325 - 378
Target Start/End: Original strand, 27144066 - 27144120
Alignment:
Q  325 acagtttatatttccaagacagaaa-ttatatttatagattccttaaccagtgcc 378  Q
    |||||||||||||| || ||||||| || |||||||||||| |||||||||||||    
T  27144066 acagtttatatttctaatacagaaaattctatttatagatttcttaaccagtgcc 27144120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 322 - 371
Target Start/End: Original strand, 43014711 - 43014761
Alignment:
Q  322 gtgacagtttatatttccaagacag-aaattatatttatagattccttaac 371  Q
    |||||| |||||||||||||||||| |||||||||||||| |||| |||||    
T  43014711 gtgacaatttatatttccaagacagaaaattatatttataaattctttaac 43014761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 322 - 352
Target Start/End: Original strand, 43863005 - 43863035
Alignment:
Q  322 gtgacagtttatatttccaagacagaaatta 352  Q
    |||||||||||||||||||||||||||||||    
T  43863005 gtgacagtttatatttccaagacagaaatta 43863035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 325 - 380
Target Start/End: Complemental strand, 17109581 - 17109525
Alignment:
Q  325 acagtttatatttccaagacag-aaattatatttatagattccttaaccagtgcccc 380  Q
    ||||||||||||||||||| || ||||| |||||||| ||| ||||||| |||||||    
T  17109581 acagtttatatttccaagatagaaaattctatttataaatttcttaacccgtgcccc 17109525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1372 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: scaffold1372
Description:

Target: scaffold1372; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 322 - 382
Target Start/End: Complemental strand, 1320 - 1260
Alignment:
Q  322 gtgacagtttatatttccaagacagaaattatatttatagattccttaaccagtgccccgg 382  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  1320 gtgacagtttatatttccaagacagaaattctatttatagattccttaacccgtgccccgg 1260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 1e-18; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 322 - 382
Target Start/End: Complemental strand, 48282940 - 48282880
Alignment:
Q  322 gtgacagtttatatttccaagacagaaattatatttatagattccttaaccagtgccccgg 382  Q
    ||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||    
T  48282940 gtgacagattatattttcaagacagaaattctatttatagattccttaaccagtgccccgg 48282880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 322 - 377
Target Start/End: Complemental strand, 20471381 - 20471326
Alignment:
Q  322 gtgacagtttatatttccaagacagaaattatatttatagattccttaaccagtgc 377  Q
    ||||||||||||||||| ||||||  ||||||||||||||||| ||||||||||||    
T  20471381 gtgacagtttatatttctaagacaacaattatatttatagatttcttaaccagtgc 20471326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 322 - 377
Target Start/End: Original strand, 20560156 - 20560211
Alignment:
Q  322 gtgacagtttatatttccaagacagaaattatatttatagattccttaaccagtgc 377  Q
    ||||||||||||||||| ||||||  ||||||||||||||||| ||||||||||||    
T  20560156 gtgacagtttatatttctaagacaacaattatatttatagatttcttaaccagtgc 20560211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 322 - 376
Target Start/End: Complemental strand, 30627664 - 30627610
Alignment:
Q  322 gtgacagtttatatttccaagacagaaattatatttatagattccttaaccagtg 376  Q
    ||||||| |||||||||||||||| ||||| |||||||||||||||||| |||||    
T  30627664 gtgacaggttatatttccaagacataaattctatttatagattccttaatcagtg 30627610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 328 - 377
Target Start/End: Complemental strand, 33827868 - 33827818
Alignment:
Q  328 gtttatatttccaagacagaaa-ttatatttatagattccttaaccagtgc 377  Q
    |||||||||||||||||||||| || |||||||||||||||||||||||||    
T  33827868 gtttatatttccaagacagaaaattttatttatagattccttaaccagtgc 33827818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 328 - 377
Target Start/End: Original strand, 33840097 - 33840147
Alignment:
Q  328 gtttatatttccaagacagaaa-ttatatttatagattccttaaccagtgc 377  Q
    |||||||||||||||||||||| || |||||||||||||||||||||||||    
T  33840097 gtttatatttccaagacagaaaattttatttatagattccttaaccagtgc 33840147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 326 - 378
Target Start/End: Complemental strand, 31884505 - 31884453
Alignment:
Q  326 cagtttatatttccaagacagaaattatatttatagattccttaaccagtgcc 378  Q
    |||||||||||||||||| ||||||| |||||||||||| |||||| ||||||    
T  31884505 cagtttatatttccaagatagaaattctatttatagatttcttaacaagtgcc 31884453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 358
Target Start/End: Complemental strand, 50127396 - 50127361
Alignment:
Q  323 tgacagtttatatttccaagacagaaattatattta 358  Q
    ||||||||||||||||||||||||||||| ||||||    
T  50127396 tgacagtttatatttccaagacagaaattctattta 50127361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 327 - 373
Target Start/End: Complemental strand, 18786493 - 18786447
Alignment:
Q  327 agtttatatttccaagacagaaattatatttatagattccttaacca 373  Q
    ||||||||||||||||||| || || || ||||||||||||||||||    
T  18786493 agtttatatttccaagacaaaagttttacttatagattccttaacca 18786447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 322 - 379
Target Start/End: Complemental strand, 40391267 - 40391209
Alignment:
Q  322 gtgacagtttatatttccaagacag-aaattatatttatagattccttaaccagtgccc 379  Q
    |||||||||||||||| |||||||| |||||  ||||||||||| ||||| ||||||||    
T  40391267 gtgacagtttatattttcaagacagaaaattcgatttatagatttcttaatcagtgccc 40391209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 371
Target Start/End: Complemental strand, 34347268 - 34347227
Alignment:
Q  330 ttatatttccaagacagaaattatatttatagattccttaac 371  Q
    |||||||||||||||| || |||||||||||||||| |||||    
T  34347268 ttatatttccaagacaaaatttatatttatagattctttaac 34347227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 375
Target Start/End: Complemental strand, 50468855 - 50468802
Alignment:
Q  323 tgacagtttatatttccaagacagaaa-ttatatttatagattccttaaccagt 375  Q
    |||||| ||||||||| |||| ||||| || |||||||||||||||||||||||    
T  50468855 tgacaggttatatttctaagatagaaaattttatttatagattccttaaccagt 50468802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 322 - 382
Target Start/End: Original strand, 19066924 - 19066984
Alignment:
Q  322 gtgacagtttatatttccaagacagaaattatatttatagattccttaaccagtgccccgg 382  Q
    |||||| |||||||||| ||||||  |||| |||||||||||| |||||| ||||| ||||    
T  19066924 gtgacaatttatatttctaagacaacaattctatttatagatttcttaactagtgctccgg 19066984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 322 - 382
Target Start/End: Original strand, 19114814 - 19114874
Alignment:
Q  322 gtgacagtttatatttccaagacagaaattatatttatagattccttaaccagtgccccgg 382  Q
    |||||| |||||||||| ||||||  |||| |||||||||||| |||||| ||||| ||||    
T  19114814 gtgacaatttatatttctaagacaacaattctatttatagatttcttaactagtgctccgg 19114874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 322 - 373
Target Start/End: Complemental strand, 26855876 - 26855824
Alignment:
Q  322 gtgacagtttatatttccaagac-agaaattatatttatagattccttaacca 373  Q
    ||||||| ||||||||||||||| | ||||| ||||||||||||| |||||||    
T  26855876 gtgacagattatatttccaagacaaaaaattctatttatagattctttaacca 26855824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 322 - 381
Target Start/End: Original strand, 22035796 - 22035856
Alignment:
Q  322 gtgacagtttatatttccaagacag-aaattatatttatagattccttaaccagtgccccg 381  Q
    ||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||    
T  22035796 gtgacagtttatatttccaagacagaaaattctatttatagattcattaaccagtgccccg 22035856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 322 - 370
Target Start/End: Original strand, 41434765 - 41434813
Alignment:
Q  322 gtgacagtttatatttccaagacagaaattatatttatagattccttaa 370  Q
    ||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  41434765 gtgacagtttatatttctaagacagaaattatatttatagattctttaa 41434813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 322 - 382
Target Start/End: Complemental strand, 45907083 - 45907023
Alignment:
Q  322 gtgacagtttatatttccaagacagaaattatatttatagattccttaaccagtgccccgg 382  Q
    |||||||||||||||| ||||||| ||| | |||||||||||||||||||| |||||||||    
T  45907083 gtgacagtttatatttacaagacaaaaaatctatttatagattccttaacccgtgccccgg 45907023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 323 - 378
Target Start/End: Original strand, 16861742 - 16861797
Alignment:
Q  323 tgacagtttatatttccaagacagaaattatatttatagattccttaaccagtgcc 378  Q
    ||||||||||||||||||||||| ||||| |||||||||||| ||||||| |||||    
T  16861742 tgacagtttatatttccaagacataaattctatttatagatttcttaaccggtgcc 16861797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 329 - 382
Target Start/End: Original strand, 27364663 - 27364717
Alignment:
Q  329 tttatatttccaagacagaaa-ttatatttatagattccttaaccagtgccccgg 382  Q
    ||||||||||||||||| ||| || ||||||||||||||||||||||||||||||    
T  27364663 tttatatttccaagacataaaattctatttatagattccttaaccagtgccccgg 27364717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 379
Target Start/End: Complemental strand, 34993139 - 34993090
Alignment:
Q  330 ttatatttccaagacagaaattatatttatagattccttaaccagtgccc 379  Q
    |||||||| ||||||| || |||||||| ||||||||||||||| |||||    
T  34993139 ttatattttcaagacaaaatttatatttgtagattccttaaccattgccc 34993090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 322 - 381
Target Start/End: Original strand, 14863400 - 14863459
Alignment:
Q  322 gtgacagtttatatttccaagacagaaattatatttatagattccttaaccagtgccccg 381  Q
    |||||||||||||||| ||||||| ||||||||||||||||||| |||||||||| ||||    
T  14863400 gtgacagtttatattttcaagacataaattatatttatagattctttaaccagtgtcccg 14863459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 327 - 382
Target Start/End: Complemental strand, 7609584 - 7609529
Alignment:
Q  327 agtttatatttccaagacagaaattatatttatagattccttaaccagtgccccgg 382  Q
    ||||||||||||||| ||||||||| || ||||||||||||||| |||||||||||    
T  7609584 agtttatatttccaaaacagaaattctaattatagattccttaatcagtgccccgg 7609529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 322 - 379
Target Start/End: Complemental strand, 2611198 - 2611140
Alignment:
Q  322 gtgacagtttatatttccaagacagaaatta-tatttatagattccttaaccagtgccc 379  Q
    ||||||| |||||||||||||||| |||||  |||||||||||||||||||||||||||    
T  2611198 gtgacagcttatatttccaagacataaatttctatttatagattccttaaccagtgccc 2611140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 322 - 373
Target Start/End: Original strand, 11320189 - 11320240
Alignment:
Q  322 gtgacagtttatatttccaagacagaaattatatttatagattccttaacca 373  Q
    ||||||||||||||||| |||| ||||||| || ||||||||||||||||||    
T  11320189 gtgacagtttatatttctaagatagaaattttaattatagattccttaacca 11320240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 322 - 380
Target Start/End: Original strand, 12187247 - 12187305
Alignment:
Q  322 gtgacagtttatatttccaagacagaaattatatttatagattccttaaccagtgcccc 380  Q
    ||||| |||||||||||||||||| ||||| ||||| ||||||| ||||||| ||||||    
T  12187247 gtgaccgtttatatttccaagacaaaaattctatttgtagattctttaaccaatgcccc 12187305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 322 - 382
Target Start/End: Original strand, 35185319 - 35185380
Alignment:
Q  322 gtgacagtttatatttccaagacagaaa-ttatatttatagattccttaaccagtgccccgg 382  Q
    |||||||||||||||| ||||||| ||| || ||||||||||||| ||||||||||| ||||    
T  35185319 gtgacagtttatattttcaagacataaaattctatttatagattctttaaccagtgctccgg 35185380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 328 - 382
Target Start/End: Complemental strand, 18677970 - 18677915
Alignment:
Q  328 gtttatatttccaagacagaaa-ttatatttatagattccttaaccagtgccccgg 382  Q
    |||||||||| ||||| ||||| || ||||||||||||||||||||||||| ||||    
T  18677970 gtttatattttcaagatagaaaattctatttatagattccttaaccagtgctccgg 18677915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 322 - 373
Target Start/End: Complemental strand, 21052677 - 21052626
Alignment:
Q  322 gtgacagtttatatttccaagacagaaattatatttatagattccttaacca 373  Q
    |||||||||||||||| |||||  |||||| |||||||| ||||||||||||    
T  21052677 gtgacagtttatatttgcaagatggaaattttatttataaattccttaacca 21052626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 322 - 378
Target Start/End: Original strand, 17506330 - 17506386
Alignment:
Q  322 gtgacagtttatatttccaagacagaaattatatttatagattccttaaccagtgcc 378  Q
    |||||||||||||||||||| | | |||||||||||||||||| |||||||||||||    
T  17506330 gtgacagtttatatttccaaaatataaattatatttatagatttcttaaccagtgcc 17506386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 375
Target Start/End: Complemental strand, 21809855 - 21809802
Alignment:
Q  322 gtgacagtttatatttccaagacagaaattatatttatagattccttaaccagt 375  Q
    |||||| |||||||||| ||||||  |||| |||||||||||| ||||||||||    
T  21809855 gtgacaatttatatttctaagacaacaattctatttatagatttcttaaccagt 21809802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 326 - 370
Target Start/End: Original strand, 4803224 - 4803268
Alignment:
Q  326 cagtttatatttccaagacagaaattatatttatagattccttaa 370  Q
    ||||||||||||| || ||||||||| ||||||||||||| ||||    
T  4803224 cagtttatatttcaaacacagaaattctatttatagattctttaa 4803268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 322 - 381
Target Start/End: Complemental strand, 19147197 - 19147138
Alignment:
Q  322 gtgacagtttatatttccaagacagaaattatatttatagattccttaaccagtgccccg 381  Q
    |||||||||||||||| ||||||||||||| || ||||||||| ||||||||||| ||||    
T  19147197 gtgacagtttatattttcaagacagaaattctacttatagatttcttaaccagtgtcccg 19147138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 322 - 377
Target Start/End: Original strand, 47397669 - 47397724
Alignment:
Q  322 gtgacagtttatatttccaagacagaaattatatttatagattccttaaccagtgc 377  Q
    ||||||||||||||||| || | ||||||| |||||||||||||||||||||||||    
T  47397669 gtgacagtttatatttctaaaatagaaattctatttatagattccttaaccagtgc 47397724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 329 - 376
Target Start/End: Original strand, 16004449 - 16004496
Alignment:
Q  329 tttatatttccaagacagaaattatatttatagattccttaaccagtg 376  Q
    ||||||||||||||||||||||| |||||||||||| ||||| |||||    
T  16004449 tttatatttccaagacagaaattctatttatagatttcttaagcagtg 16004496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 322 - 375
Target Start/End: Complemental strand, 31242001 - 31241947
Alignment:
Q  322 gtgacagtttatatttccaagacagaaa-ttatatttatagattccttaaccagt 375  Q
    ||||| |||||||||| ||||||||||| || |||||||||||||||||||||||    
T  31242001 gtgaccgtttatattttcaagacagaaaattctatttatagattccttaaccagt 31241947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 322 - 376
Target Start/End: Original strand, 31647785 - 31647839
Alignment:
Q  322 gtgacagtttatatttccaagacagaaattatatttatagattccttaaccagtg 376  Q
    |||| |||||||||||| |||||||||||| ||||||||||||| |||| |||||    
T  31647785 gtgatagtttatatttctaagacagaaattctatttatagattctttaatcagtg 31647839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 322 - 378
Target Start/End: Complemental strand, 38319590 - 38319533
Alignment:
Q  322 gtgacagtttatatttccaagacagaaa-ttatatttatagattccttaaccagtgcc 378  Q
    |||||||||||||||| ||| ||||||| || ||||||||||||||||||||| ||||    
T  38319590 gtgacagtttatattttcaaaacagaaaattctatttatagattccttaaccaatgcc 38319533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 322 - 365
Target Start/End: Complemental strand, 38320168 - 38320124
Alignment:
Q  322 gtgacagtttatatttccaagacag-aaattatatttatagattc 365  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||    
T  38320168 gtgacagtttatatttccaagacagaaaattctatttatagattc 38320124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 363 - 409
Target Start/End: Original strand, 48743577 - 48743622
Alignment:
Q  363 ttccttaaccagtgccccggccccggggcactggtcaacaagaccct 409  Q
    ||||||||||||||||| | ||||||||||||||| |||||||||||    
T  48743577 ttccttaaccagtgccc-gcccccggggcactggttaacaagaccct 48743622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 322 - 366
Target Start/End: Complemental strand, 20542644 - 20542600
Alignment:
Q  322 gtgacagtttatatttccaagacagaaattatatttatagattcc 366  Q
    |||||||||||||||| ||||| ||||||| ||||||| ||||||    
T  20542644 gtgacagtttatatttacaagatagaaattttatttatggattcc 20542600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 322 - 382
Target Start/End: Complemental strand, 22473 - 22413
Alignment:
Q  322 gtgacagtttatatttccaagacagaaattatatttatagattccttaaccagtgccccgg 382  Q
    ||||| |||||||||||||| ||| || ||||||||||||||||||||| ||||| |||||    
T  22473 gtgacggtttatatttccaacacaaaagttatatttatagattccttaatcagtgtcccgg 22413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000006; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 329 - 380
Target Start/End: Complemental strand, 40574185 - 40574134
Alignment:
Q  329 tttatatttccaagacagaaattatatttatagattccttaaccagtgcccc 380  Q
    ||||||||||||||||| || || ||||| ||||||||||||||||||||||    
T  40574185 tttatatttccaagacaaaatttctatttgtagattccttaaccagtgcccc 40574134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 327 - 376
Target Start/End: Complemental strand, 23760637 - 23760588
Alignment:
Q  327 agtttatatttccaagacagaaattatatttatagattccttaaccagtg 376  Q
    |||||||||||  |||||| ||||||||||||||||||| ||||||||||    
T  23760637 agtttatatttttaagacataaattatatttatagattcgttaaccagtg 23760588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 322 - 376
Target Start/End: Complemental strand, 18243354 - 18243299
Alignment:
Q  322 gtgacagtttatatttccaagacagaaa-ttatatttatagattccttaaccagtg 376  Q
    |||| ||||||||||||||| ||| ||| || ||||||||||||||||||||||||    
T  18243354 gtgaaagtttatatttccaaaacaaaaaattttatttatagattccttaaccagtg 18243299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 382
Target Start/End: Original strand, 19889817 - 19889870
Alignment:
Q  330 ttatatttccaagacagaaa-ttatatttatagattccttaaccagtgccccgg 382  Q
    |||||||||||| ||| ||| || |||||||||||| |||||||||||||||||    
T  19889817 ttatatttccaaaacataaaattctatttatagatttcttaaccagtgccccgg 19889870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 420
Target Start/End: Complemental strand, 31807785 - 31807729
Alignment:
Q  363 ttccttaaccagtgccccggccccggggcactggtcaacaagacccttgttttttaac 420  Q
    ||||||||||||||||||| || |||||||||||| |||| |||| || |||||||||    
T  31807785 ttccttaaccagtgccccg-ccacggggcactggttaacatgaccttttttttttaac 31807729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 381
Target Start/End: Original strand, 38866 - 38924
Alignment:
Q  323 tgacagtttatatttccaagacagaaattatatttatagattccttaaccagtgccccg 381  Q
    ||||||||||||||||||||| | ||||| ||||||||||||  ||||||||| |||||    
T  38866 tgacagtttatatttccaagatataaattctatttatagattttttaaccagtaccccg 38924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 327 - 371
Target Start/End: Complemental strand, 906 - 861
Alignment:
Q  327 agtttatatttccaagacag-aaattatatttatagattccttaac 371  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||    
T  906 agtttatatttccaagacagaaaattctatttatagattccttaac 861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 363
Target Start/End: Complemental strand, 16879 - 16838
Alignment:
Q  322 gtgacagtttatatttccaagacagaaattatatttatagat 363  Q
    |||||||||||||||| ||||||||||| | |||||||||||    
T  16879 gtgacagtttatattttcaagacagaaactctatttatagat 16838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0886 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0886
Description:

Target: scaffold0886; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 322 - 382
Target Start/End: Complemental strand, 1154 - 1094
Alignment:
Q  322 gtgacagtttatatttccaagacagaaattatatttatagattccttaaccagtgccccgg 382  Q
    |||||||||||||||| ||||| | ||||| |||||||| ||| ||| ||||||| |||||    
T  1154 gtgacagtttatattttcaagaaaaaaattctatttataaatttcttgaccagtgtcccgg 1094  T

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