View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0749_low_21 (Length: 361)
Name: NF0749_low_21
Description: NF0749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0749_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 11 - 333
Target Start/End: Complemental strand, 14260678 - 14260353
Alignment:
| Q |
11 |
gcagaacctgtgttgtcagtcacacggaatgtgatgcgaaacctatatctaatccaaattaatcttaaataatttgtactttatatgtccaaattaagtt |
110 |
Q |
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| T |
14260678 |
gcagatcctgtgttgtcagtcacatggaatgtgatgcgaaacctatatccaatccaaattaatcttaaataatttgtactttatatgtccaaattaagtt |
14260579 |
T |
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| Q |
111 |
tattataagtaccaaactaatattnnnnnnnnn---ctaccttggagtaatcattaaaacatgcttattacacctttcacaatagtaagcaggactgtca |
207 |
Q |
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| T |
14260578 |
tattataagtaccaaattaatattaaaaaaaaaaaactaccttggagtaatcattaaaacatgcttattacatctttcacaatagtaagcaggactgtca |
14260479 |
T |
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| Q |
208 |
agaacaacgtgttcatgacaaacacaagataaaaaccaccaaccaccatcggtgacatattggtcaacagtggccattatgatagacattgattcctgca |
307 |
Q |
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| T |
14260478 |
ggaacaacttgttcatgacaaatacaagataaaaaccaccaaccatcatcggtgacatattggtcaacagtggccattatgatagacattgattcctgca |
14260379 |
T |
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| Q |
308 |
aattctcaaattagataaagaaatat |
333 |
Q |
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| T |
14260378 |
aattctcaaattagataaagaaatat |
14260353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 65 - 331
Target Start/End: Original strand, 22135905 - 22136170
Alignment:
| Q |
65 |
caaattaatcttaaataatttgtactttatatgtccaaattaagtttattataagtaccaaactaatattnnnnnnnnnctaccttggagtaatcattaa |
164 |
Q |
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| T |
22135905 |
caaattaattataaacaattagtactctatatatcaaaattaaattcattataaataccaaactaatatacaaaaaagcccacctcagagtaatcattca |
22136004 |
T |
|
| Q |
165 |
aacatgcttattacacctttcacaatagtaagcaggactgtcaagaacaacgtgttcatgacaaacacaagataaaaaccaccaaccaccatcggtgaca |
264 |
Q |
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| T |
22136005 |
aacatgcttattacacctttcacaatagtaggcaggactgtctggaacaacttgttcatgacaaacacaagataaataccaccaaccatcatcagtgata |
22136104 |
T |
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| Q |
265 |
tattggtcaacagtggccattatgatagacattgattcctgcaaattctcaaattagataaagaaat |
331 |
Q |
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| T |
22136105 |
tattggtcaacagtgaccattatgatagccatcgattcctgcaaattctcacattaga-aaagaaat |
22136170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 227 - 297
Target Start/End: Complemental strand, 19724034 - 19723964
Alignment:
| Q |
227 |
aaacacaagataaaaaccaccaaccaccatcggtgacatattggtcaacagtggccattatgatagacatt |
297 |
Q |
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| T |
19724034 |
aaacataagataaataccaccaaccatcatcaatgatatattggtcaacagtggtcattatgatagacatt |
19723964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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