View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0749_low_27 (Length: 313)

Name: NF0749_low_27
Description: NF0749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0749_low_27
NF0749_low_27
[»] chr7 (8 HSPs)
chr7 (108-285)||(20598436-20598612)
chr7 (63-107)||(48631872-48631916)
chr7 (131-285)||(24810933-24811081)
chr7 (63-107)||(1847412-1847456)
chr7 (71-107)||(4486179-4486215)
chr7 (222-285)||(9065781-9065844)
chr7 (71-107)||(1844302-1844338)
chr7 (216-284)||(12597764-12597832)
[»] chr4 (3 HSPs)
chr4 (63-108)||(4104994-4105039)
chr4 (63-107)||(3498229-3498273)
chr4 (210-272)||(10328148-10328210)
[»] chr6 (8 HSPs)
chr6 (63-107)||(12353598-12353642)
chr6 (63-108)||(9881789-9881834)
chr6 (213-285)||(12394779-12394852)
chr6 (73-107)||(22215936-22215970)
chr6 (70-107)||(14964336-14964373)
chr6 (63-107)||(2068256-2068300)
chr6 (63-107)||(8883339-8883383)
chr6 (63-99)||(9190408-9190444)
[»] chr5 (4 HSPs)
chr5 (63-107)||(21300362-21300406)
chr5 (63-107)||(137997-138041)
chr5 (63-107)||(25644555-25644599)
chr5 (63-107)||(7201407-7201451)
[»] chr1 (3 HSPs)
chr1 (63-107)||(44717611-44717655)
chr1 (63-107)||(9327059-9327103)
chr1 (70-107)||(21859255-21859292)
[»] chr3 (4 HSPs)
chr3 (213-286)||(19643280-19643354)
chr3 (63-107)||(7490176-7490219)
chr3 (71-104)||(10309726-10309759)
chr3 (63-107)||(18072089-18072133)
[»] scaffold1175 (1 HSPs)
scaffold1175 (63-107)||(1906-1950)
[»] chr8 (8 HSPs)
chr8 (63-107)||(14979175-14979219)
chr8 (63-107)||(20463259-20463303)
chr8 (72-107)||(13783224-13783259)
chr8 (73-107)||(39323477-39323511)
chr8 (63-107)||(15334710-15334754)
chr8 (63-107)||(15423773-15423817)
chr8 (63-107)||(15515079-15515123)
chr8 (63-107)||(18803701-18803746)
[»] scaffold0606 (1 HSPs)
scaffold0606 (213-285)||(5789-5862)
[»] scaffold0019 (1 HSPs)
scaffold0019 (63-106)||(111443-111486)
[»] chr2 (1 HSPs)
chr2 (72-107)||(11293850-11293885)


Alignment Details
Target: chr7 (Bit Score: 122; Significance: 1e-62; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 108 - 285
Target Start/End: Original strand, 20598436 - 20598612
Alignment:
Q  108 acatcttcagagtctggatgactttcagagtctggatgacttttagagtgtgactacttccagagtttgacttgcaacataccttctcagttctcgtgaa 207  Q
    ||||||||||||| ||  || ||| |||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  20598436 acatcttcagagtttgactg-cttccagagtctggatgactttcagagtttgactacttccagagtctgacttgcaacataccttctcagttctcatgaa 20598534  T
Q  208 aatccttgctcttgatttgttctttcagaatcaatacttgatttagacataataaactttagtctctgctcctgcaca 285  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||    
T  20598535 aatcattgctcttgatttgttctttcataatcaatacttgatttagacataataaactttagtctatgttcctgcaca 20598612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 63 - 107
Target Start/End: Original strand, 48631872 - 48631916
Alignment:
Q  63 caatcaaccattttaaaagtcgcaaaatgcagtttttcttgtagt 107  Q
    |||||| ||||||||||||||||||||||||||||||||||||||    
T  48631872 caatcagccattttaaaagtcgcaaaatgcagtttttcttgtagt 48631916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 131 - 285
Target Start/End: Complemental strand, 24811081 - 24810933
Alignment:
Q  131 ttcagagtctggatgacttttagagtgtgactacttccagagtttgacttgcaacataccttctcagttctcgtgaaaatccttgctcttga-tttgttc 229  Q
    ||||||||||||||||| |||| ||| ||||| |||  ||| | |||||||||||||| |||||||       |||||||| |||||||| | |||| ||    
T  24811081 ttcagagtctggatgacctttaaagtctgacttcttt-agattctgacttgcaacatagcttctca-------tgaaaatctttgctcttcaatttgatc 24810990  T
Q  230 tttcagaatcaatac-ttgatttagacataataaactttagtctctgctcctgcaca 285  Q
    ||||||||||||||| |||||| ||| |||||| | |||||||| || |||||||||    
T  24810989 tttcagaatcaatactttgattaagaaataatatattttagtctatgatcctgcaca 24810933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 63 - 107
Target Start/End: Original strand, 1847412 - 1847456
Alignment:
Q  63 caatcaaccattttaaaagtcgcaaaatgcagtttttcttgtagt 107  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||    
T  1847412 caatcagccattttaaaagtcgtaaaatgcagtttttcttgtagt 1847456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 107
Target Start/End: Complemental strand, 4486215 - 4486179
Alignment:
Q  71 cattttaaaagtcgcaaaatgcagtttttcttgtagt 107  Q
    ||||||||||||||||||||||| |||||||||||||    
T  4486215 cattttaaaagtcgcaaaatgcattttttcttgtagt 4486179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 285
Target Start/End: Original strand, 9065781 - 9065844
Alignment:
Q  222 atttgttctttcagaatcaatacttgatttagacataataaactttagtctctgctcctgcaca 285  Q
    ||||||||||||| ||||||||| ||||| |||||| ||||| ||| |||| || |||||||||    
T  9065781 atttgttctttcaaaatcaatacatgattaagacattataaatttttgtctatggtcctgcaca 9065844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 107
Target Start/End: Complemental strand, 1844338 - 1844302
Alignment:
Q  71 cattttaaaagtcgcaaaatgcagtttttcttgtagt 107  Q
    ||||||||| ||||||||||||| |||||||||||||    
T  1844338 cattttaaatgtcgcaaaatgcattttttcttgtagt 1844302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 284
Target Start/End: Complemental strand, 12597832 - 12597764
Alignment:
Q  216 ctcttgatttgttctttcagaatcaatacttgatttagacataataaactttagtctctgctcctgcac 284  Q
    ||||| |||||||||||||||| |||||| ||||| |||||| |||||  || |||| || ||||||||    
T  12597832 ctcttcatttgttctttcagaaccaatacatgattaagacattataaatatttgtctatggtcctgcac 12597764  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 63 - 108
Target Start/End: Original strand, 4104994 - 4105039
Alignment:
Q  63 caatcaaccattttaaaagtcgcaaaatgcagtttttcttgtagta 108  Q
    |||||| |||||||||||||||||||||||||||||||||||||||    
T  4104994 caatcagccattttaaaagtcgcaaaatgcagtttttcttgtagta 4105039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 63 - 107
Target Start/End: Complemental strand, 3498273 - 3498229
Alignment:
Q  63 caatcaaccattttaaaagtcgcaaaatgcagtttttcttgtagt 107  Q
    |||||| | ||||||||||||||||||||||||||||||||||||    
T  3498273 caatcagcgattttaaaagtcgcaaaatgcagtttttcttgtagt 3498229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 272
Target Start/End: Complemental strand, 10328210 - 10328148
Alignment:
Q  210 tccttgctcttgatttgttctttcagaatcaatacttgatttagacataataaactttagtct 272  Q
    ||||||||| | | ||||||||| |||| |||||||||||| ||||||| |||| ||||||||    
T  10328210 tccttgctcattaattgttctttgagaaccaatacttgattaagacatactaaattttagtct 10328148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 63 - 107
Target Start/End: Complemental strand, 12353642 - 12353598
Alignment:
Q  63 caatcaaccattttaaaagtcgcaaaatgcagtttttcttgtagt 107  Q
    |||||| ||||||||||||||||||||||||||||||||||||||    
T  12353642 caatcagccattttaaaagtcgcaaaatgcagtttttcttgtagt 12353598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 63 - 108
Target Start/End: Complemental strand, 9881834 - 9881789
Alignment:
Q  63 caatcaaccattttaaaagtcgcaaaatgcagtttttcttgtagta 108  Q
    |||||| ||||||||||||||||||||||||  |||||||||||||    
T  9881834 caatcagccattttaaaagtcgcaaaatgcaaattttcttgtagta 9881789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 213 - 285
Target Start/End: Original strand, 12394779 - 12394852
Alignment:
Q  213 ttgctcttgatttgttctttcagaatcaatactt-gatttagacataataaactttagtctctgctcctgcaca 285  Q
    |||||||  ||||||||||||| || |||||||| |||| |||||||||||| |||||||| || |||||||||    
T  12394779 ttgctctaaatttgttctttcataaccaatactttgattaagacataataaattttagtctatggtcctgcaca 12394852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 107
Target Start/End: Complemental strand, 22215970 - 22215936
Alignment:
Q  73 ttttaaaagtcgcaaaatgcagtttttcttgtagt 107  Q
    |||||||||||| ||||||||||||||||||||||    
T  22215970 ttttaaaagtcgaaaaatgcagtttttcttgtagt 22215936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 107
Target Start/End: Original strand, 14964336 - 14964373
Alignment:
Q  70 ccattttaaaagtcgcaaaatgcagtttttcttgtagt 107  Q
    |||||||||| |||||||||||||||||||| ||||||    
T  14964336 ccattttaaatgtcgcaaaatgcagtttttcctgtagt 14964373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 107
Target Start/End: Complemental strand, 2068300 - 2068256
Alignment:
Q  63 caatcaaccattttaaaagtcgcaaaatgcagtttttcttgtagt 107  Q
    |||||| | |||||||| ||||||||||||| |||||||||||||    
T  2068300 caatcagcaattttaaaggtcgcaaaatgcattttttcttgtagt 2068256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 107
Target Start/End: Original strand, 8883339 - 8883383
Alignment:
Q  63 caatcaaccattttaaaagtcgcaaaatgcagtttttcttgtagt 107  Q
    |||||| |||||||||| |||||||||||||  ||||||||||||    
T  8883339 caatcagccattttaaaggtcgcaaaatgcaaattttcttgtagt 8883383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 99
Target Start/End: Complemental strand, 9190444 - 9190408
Alignment:
Q  63 caatcaaccattttaaaagtcgcaaaatgcagttttt 99  Q
    ||||||||  |||||||||||||||||||||||||||    
T  9190444 caatcaacgtttttaaaagtcgcaaaatgcagttttt 9190408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 63 - 107
Target Start/End: Complemental strand, 21300406 - 21300362
Alignment:
Q  63 caatcaaccattttaaaagtcgcaaaatgcagtttttcttgtagt 107  Q
    |||||| ||||||||||||||||||||||||||||||||||||||    
T  21300406 caatcagccattttaaaagtcgcaaaatgcagtttttcttgtagt 21300362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 63 - 107
Target Start/End: Original strand, 137997 - 138041
Alignment:
Q  63 caatcaaccattttaaaagtcgcaaaatgcagtttttcttgtagt 107  Q
    ||||||||  |||||||||||||||||||||||||||||||||||    
T  137997 caatcaacgtttttaaaagtcgcaaaatgcagtttttcttgtagt 138041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 63 - 107
Target Start/End: Original strand, 25644555 - 25644599
Alignment:
Q  63 caatcaaccattttaaaagtcgcaaaatgcagtttttcttgtagt 107  Q
    |||||||| |||||||||||||||||||||| |||||||||||||    
T  25644555 caatcaacaattttaaaagtcgcaaaatgcaatttttcttgtagt 25644599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 107
Target Start/End: Complemental strand, 7201451 - 7201407
Alignment:
Q  63 caatcaaccattttaaaagtcgcaaaatgcagtttttcttgtagt 107  Q
    |||||| |||||||||| |||||||||||||  ||||||||||||    
T  7201451 caatcagccattttaaaggtcgcaaaatgcaaattttcttgtagt 7201407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 63 - 107
Target Start/End: Complemental strand, 44717655 - 44717611
Alignment:
Q  63 caatcaaccattttaaaagtcgcaaaatgcagtttttcttgtagt 107  Q
    |||||| ||||||||||||||||||||||||||||||||||||||    
T  44717655 caatcagccattttaaaagtcgcaaaatgcagtttttcttgtagt 44717611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 63 - 107
Target Start/End: Original strand, 9327059 - 9327103
Alignment:
Q  63 caatcaaccattttaaaagtcgcaaaatgcagtttttcttgtagt 107  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||    
T  9327059 caatcaacaattttaaaagttgcaaaatgcagtttttcttgtagt 9327103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 70 - 107
Target Start/End: Complemental strand, 21859292 - 21859255
Alignment:
Q  70 ccattttaaaagtcgcaaaatgcagtttttcttgtagt 107  Q
    |||||||||| |||||||||||||||||||||||||||    
T  21859292 ccattttaaatgtcgcaaaatgcagtttttcttgtagt 21859255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 213 - 286
Target Start/End: Complemental strand, 19643354 - 19643280
Alignment:
Q  213 ttgctcttgatttgttctttcagaatcaatactt-gatttagacataataaactttagtctctgctcctgcacaa 286  Q
    |||| ||| ||||||||||||| ||||||||||| |||| |||||||||||| |||||||| || ||||||||||    
T  19643354 ttgcccttcatttgttctttcaaaatcaatacttagattaagacataataaattttagtctatggtcctgcacaa 19643280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 107
Target Start/End: Complemental strand, 7490219 - 7490176
Alignment:
Q  63 caatcaaccattttaaaagtcgcaaaatgcagtttttcttgtagt 107  Q
    |||||||||||||||||||| ||||||||||| ||||||||||||    
T  7490219 caatcaaccattttaaaagttgcaaaatgcag-ttttcttgtagt 7490176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 104
Target Start/End: Complemental strand, 10309759 - 10309726
Alignment:
Q  71 cattttaaaagtcgcaaaatgcagtttttcttgt 104  Q
    ||||||||||||||||||||||| ||||||||||    
T  10309759 cattttaaaagtcgcaaaatgcattttttcttgt 10309726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 107
Target Start/End: Complemental strand, 18072133 - 18072089
Alignment:
Q  63 caatcaaccattttaaaagtcgcaaaatgcagtttttcttgtagt 107  Q
    |||||| ||||||||||| |||||||||| |||||||||| ||||    
T  18072133 caatcagccattttaaaattcgcaaaatgtagtttttcttatagt 18072089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1175 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold1175
Description:

Target: scaffold1175; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 63 - 107
Target Start/End: Original strand, 1906 - 1950
Alignment:
Q  63 caatcaaccattttaaaagtcgcaaaatgcagtttttcttgtagt 107  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||    
T  1906 caatcagccattttaaaattcgcaaaatgcagtttttcttgtagt 1950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 63 - 107
Target Start/End: Complemental strand, 14979219 - 14979175
Alignment:
Q  63 caatcaaccattttaaaagtcgcaaaatgcagtttttcttgtagt 107  Q
    |||||| | ||||||||||||||||||||||||||||||||||||    
T  14979219 caatcagctattttaaaagtcgcaaaatgcagtttttcttgtagt 14979175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 63 - 107
Target Start/End: Complemental strand, 20463303 - 20463259
Alignment:
Q  63 caatcaaccattttaaaagtcgcaaaatgcagtttttcttgtagt 107  Q
    |||||||| |||||||| |||||||||||||||||||||||||||    
T  20463303 caatcaacaattttaaatgtcgcaaaatgcagtttttcttgtagt 20463259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 72 - 107
Target Start/End: Complemental strand, 13783259 - 13783224
Alignment:
Q  72 attttaaaagtcgcaaaatgcagtttttcttgtagt 107  Q
    ||||||||||||||||||||||||||||||||||||    
T  13783259 attttaaaagtcgcaaaatgcagtttttcttgtagt 13783224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 107
Target Start/End: Complemental strand, 39323511 - 39323477
Alignment:
Q  73 ttttaaaagtcgcaaaatgcagtttttcttgtagt 107  Q
    |||||||||||||||||||||||||||||||||||    
T  39323511 ttttaaaagtcgcaaaatgcagtttttcttgtagt 39323477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 107
Target Start/End: Original strand, 15334710 - 15334754
Alignment:
Q  63 caatcaaccattttaaaagtcgcaaaatgcagtttttcttgtagt 107  Q
    |||||| | |||||||| |||||||||||||||||||||||||||    
T  15334710 caatcagcaattttaaatgtcgcaaaatgcagtttttcttgtagt 15334754  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 107
Target Start/End: Original strand, 15423773 - 15423817
Alignment:
Q  63 caatcaaccattttaaaagtcgcaaaatgcagtttttcttgtagt 107  Q
    |||||| | |||||||| |||||||||||||||||||||||||||    
T  15423773 caatcagcaattttaaatgtcgcaaaatgcagtttttcttgtagt 15423817  T

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Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 107
Target Start/End: Original strand, 15515079 - 15515123
Alignment:
Q  63 caatcaaccattttaaaagtcgcaaaatgcagtttttcttgtagt 107  Q
    |||||| | |||||||| |||||||||||||||||||||||||||    
T  15515079 caatcagcaattttaaatgtcgcaaaatgcagtttttcttgtagt 15515123  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 107
Target Start/End: Original strand, 18803701 - 18803746
Alignment:
Q  63 caatcaaccattttaaaagtcgcaaaa-tgcagtttttcttgtagt 107  Q
    |||||| |||||||||| ||||||||| ||||||||||||||||||    
T  18803701 caatcagccattttaaatgtcgcaaaaatgcagtttttcttgtagt 18803746  T

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Target: scaffold0606 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0606
Description:

Target: scaffold0606; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 213 - 285
Target Start/End: Original strand, 5789 - 5862
Alignment:
Q  213 ttgctcttgatttgttctttcagaatcaata-cttgatttagacataataaactttagtctctgctcctgcaca 285  Q
    |||||||| |||| |||||||||||||||||  |||||| |||||||||||| |||||||| || || ||||||    
T  5789 ttgctcttcatttattctttcagaatcaatattttgattgagacataataaattttagtctatgatcatgcaca 5862  T

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Target: scaffold0019 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 63 - 106
Target Start/End: Complemental strand, 111486 - 111443
Alignment:
Q  63 caatcaaccattttaaaagtcgcaaaatgcagtttttcttgtag 106  Q
    |||||| | |||||||| ||||||||||||||||||||||||||    
T  111486 caatcagcaattttaaatgtcgcaaaatgcagtttttcttgtag 111443  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 72 - 107
Target Start/End: Complemental strand, 11293885 - 11293850
Alignment:
Q  72 attttaaaagtcgcaaaatgcagtttttcttgtagt 107  Q
    ||||||||||||||||||||||||||||||| ||||    
T  11293885 attttaaaagtcgcaaaatgcagtttttcttatagt 11293850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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