View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0749_low_29 (Length: 307)
Name: NF0749_low_29
Description: NF0749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0749_low_29 |
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Alignment Details
Target: chr8 (Bit Score: 146; Significance: 6e-77; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 79 - 272
Target Start/End: Complemental strand, 29809178 - 29808985
Alignment:
| Q |
79 |
tattcttttgcaagacactactatcctttatttgccctatttaagacaagctagttgcatgtgtattt-cacttcaaattctacactatagttctcnnnn |
177 |
Q |
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| T |
29809178 |
tattcttttgcaagacactactaccctttatt-gccctatttaaggcaagctagttgcatgtgtattttcacttaaaattctacactatagttctctttt |
29809080 |
T |
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| Q |
178 |
nnncttacaagttatcatggctcgttcagttcctttggtttccaccatctttgtcttccttctgcttcttgtggccactggtgagtagtgtttct |
272 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29809079 |
tttcttacaagttatcatggctcgttcagttcctttggtttccaccatctttgtcttccttctgcttcttgtggccactggtgagtagtgtttct |
29808985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 194 - 260
Target Start/End: Complemental strand, 29801720 - 29801654
Alignment:
| Q |
194 |
atggctcgttcagttcctttggtttccaccatctttgtcttccttctgcttcttgtggccactggtg |
260 |
Q |
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| T |
29801720 |
atggctcgttcacttcctttggtttccaccatctttgttttttttcttcttcttgtggccactggtg |
29801654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 194 - 260
Target Start/End: Complemental strand, 29804838 - 29804772
Alignment:
| Q |
194 |
atggctcgttcagttcctttggtttccaccatctttgtcttccttctgcttcttgtggccactggtg |
260 |
Q |
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|||||||||||||| ||||||||||||||||||||||||| |||| ||| ||||||||||||||| |
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| T |
29804838 |
atggctcgttcagtgtctttggtttccaccatctttgtcttttttcttcttattgtggccactggtg |
29804772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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