View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0749_low_34 (Length: 281)

Name: NF0749_low_34
Description: NF0749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0749_low_34
NF0749_low_34
[»] chr8 (2 HSPs)
chr8 (28-132)||(20168628-20168735)
chr8 (136-221)||(6911057-6911141)
[»] chr7 (6 HSPs)
chr7 (28-132)||(44390337-44390444)
chr7 (136-217)||(46169319-46169400)
chr7 (133-217)||(46164424-46164508)
chr7 (136-217)||(10092311-10092393)
chr7 (135-206)||(46582467-46582538)
chr7 (133-217)||(41097624-41097708)
[»] chr4 (5 HSPs)
chr4 (133-224)||(22536864-22536954)
chr4 (134-213)||(50348153-50348232)
chr4 (138-215)||(1856676-1856752)
chr4 (148-217)||(10032290-10032359)
chr4 (165-217)||(55203347-55203399)
[»] scaffold0060 (2 HSPs)
scaffold0060 (137-217)||(11139-11220)
scaffold0060 (133-189)||(13346-13402)
[»] chr1 (5 HSPs)
chr1 (136-217)||(48986012-48986093)
chr1 (136-217)||(48990905-48990986)
chr1 (137-217)||(25491999-25492079)
chr1 (141-217)||(52433006-52433082)
chr1 (133-178)||(19880772-19880817)
[»] chr5 (4 HSPs)
chr5 (133-178)||(8740466-8740511)
chr5 (137-212)||(21632565-21632641)
chr5 (137-212)||(21640812-21640888)
chr5 (133-178)||(8740574-8740619)
[»] chr6 (3 HSPs)
chr6 (135-206)||(12258015-12258086)
chr6 (139-217)||(6356381-6356459)
chr6 (133-206)||(12257327-12257400)
[»] chr3 (1 HSPs)
chr3 (133-217)||(34374792-34374875)
[»] chr2 (4 HSPs)
chr2 (150-217)||(18259217-18259285)
chr2 (134-209)||(34227240-34227314)
chr2 (150-217)||(10257744-10257812)
chr2 (136-220)||(22563238-22563321)


Alignment Details
Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 28 - 132
Target Start/End: Complemental strand, 20168735 - 20168628
Alignment:
Q  28 taatcctttagagactaattcatggtattcttcttcctcacatgaactccatcgtgatccctcgtgttcctctcgccgtcgatg---ccgctcaccttcc 124  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||   ||||||||||| |    
T  20168735 taatcctttagagactgattcatggtattcttcttcctcacatgaactccatcgtgacccctcatgttcctctcgccgtcgatgccgccgctcacctttc 20168636  T
Q  125 atgccatc 132  Q
    ||||||||    
T  20168635 atgccatc 20168628  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 221
Target Start/End: Original strand, 6911057 - 6911141
Alignment:
Q  136 gctccatttaccccatttagggtgttggatgaatgacatgtggtagaaaaagatttaatgattcagatttaaaataaacaaacaat 221  Q
    ||||||||||| ||||||||||| ||||||| | ||||||||| | ||||| || ||| |||| |||||| |||| || |||||||    
T  6911057 gctccatttactccatttagggt-ttggatgtaagacatgtggcaaaaaaatatctaacgattgagattttaaattaaaaaacaat 6911141  T

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Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 28 - 132
Target Start/End: Complemental strand, 44390444 - 44390337
Alignment:
Q  28 taatcctttagagactaattcatggtattcttcttcctcacatgaactccatcgtgatccctcgtgttcctctcgccgtcgatg---ccgctcaccttcc 124  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||   ||||||||||| |    
T  44390444 taatcctttagagactgattcatggtattcttcttcctcacatgaactccatcgtgacccctcatgttcctctcgccgtcgatgccgccgctcacctttc 44390345  T
Q  125 atgccatc 132  Q
    ||||||||    
T  44390344 atgccatc 44390337  T

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Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 136 - 217
Target Start/End: Complemental strand, 46169400 - 46169319
Alignment:
Q  136 gctccatttaccccatttagggtgttggatgaatgacatgtggtagaaaaagatttaatgattcagatttaaaataaacaaa 217  Q
    ||||||||||||||||||||||| |||||||| |||||||||| | |||  |||| ||||||||||||| ||||||||||||    
T  46169400 gctccatttaccccatttagggtcttggatgagtgacatgtggcaaaaatggattcaatgattcagattaaaaataaacaaa 46169319  T

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Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 133 - 217
Target Start/End: Original strand, 46164424 - 46164508
Alignment:
Q  133 tatgctccatttaccccatttagggtgttggatgaatgacatgtggtagaaaaagatttaatgattcagatttaaaataaacaaa 217  Q
    |||||||||||||||||||||||||| |||||||| |||||||||| | |||  |||| |||| |||||||| ||||||||||||    
T  46164424 tatgctccatttaccccatttagggtcttggatgagtgacatgtggcaaaaatggattcaatggttcagattaaaaataaacaaa 46164508  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 136 - 217
Target Start/End: Complemental strand, 10092393 - 10092311
Alignment:
Q  136 gctccatttaccccatttagggtgttggatgaatgacatgtggtagaaaaa-gatttaatgattcagatttaaaataaacaaa 217  Q
    ||||||||||||||||||| ||| ||||||||||||||||||| | ||||| | || |||| || ||||| ||||||||||||    
T  10092393 gctccatttaccccatttaaggtcttggatgaatgacatgtggaaaaaaaatgtttgaatggttgagattaaaaataaacaaa 10092311  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 135 - 206
Target Start/End: Complemental strand, 46582538 - 46582467
Alignment:
Q  135 tgctccatttaccccatttagggtgttggatgaatgacatgtggtagaaaaagatttaatgattcagattta 206  Q
    |||||||||||  ||||||||||| ||||||||| |||| |||| | ||||||||| ||||||| |||||||    
T  46582538 tgctccatttataccatttagggtcttggatgaaagacaagtggcaaaaaaagattcaatgattgagattta 46582467  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 133 - 217
Target Start/End: Complemental strand, 41097708 - 41097624
Alignment:
Q  133 tatgctccatttaccccatttagggtgttggatgaatgacatgtggtagaaaaa-gatttaatgattcagatttaaaataaacaaa 217  Q
    |||||||||||||||||||||| | | ||||||||||||||||||  | ||||| |||| |||| || ||| ||||||||||||||    
T  41097708 tatgctccatttaccccatttaagatcttggatgaatgacatgtgacaaaaaaatgattaaatggtttaga-ttaaaataaacaaa 41097624  T

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Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 133 - 224
Target Start/End: Complemental strand, 22536954 - 22536864
Alignment:
Q  133 tatgctccatttaccccatttagggtgttggatgaatgacatgtggtagaaaaagatttaatgattcagatttaaaataaacaaacaatcta 224  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||    
T  22536954 tatgctccatttaccccatttagggtgttggatgaatgacatgtggta-aaaaaaattcaatgattcagatttaaaataaacaaacaatcta 22536864  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 134 - 213
Target Start/End: Complemental strand, 50348232 - 50348153
Alignment:
Q  134 atgctccatttaccccatttagggtgttggatgaatgacatgtggtagaaaaagatttaatgattcagatttaaaataaa 213  Q
    ||||| ||||||| ||||||||||| |||||||||||||||||| || ||||||||| |||| |||| |||| |||||||    
T  50348232 atgcttcatttactccatttagggtattggatgaatgacatgtgataaaaaaagattcaatggttcatattttaaataaa 50348153  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 138 - 215
Target Start/End: Complemental strand, 1856752 - 1856676
Alignment:
Q  138 tccatttaccccatttagggtgttggatgaatgacatgtggtagaaaaagatttaatgattcagatttaaaataaaca 215  Q
    ||||||||| ||||||||| | ||||||||||||||||||| | |||| |||| |||| |||||||||||||||||||    
T  1856752 tccatttacaccatttagg-tcttggatgaatgacatgtggcaaaaaaggattcaatggttcagatttaaaataaaca 1856676  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 148 - 217
Target Start/End: Complemental strand, 10032359 - 10032290
Alignment:
Q  148 ccatttagggtgttggatgaatgacatgtggtagaaaaagatttaatgattcagatttaaaataaacaaa 217  Q
    ||||||||| | ||||||||||||||||||  | |||| |||| ||||||||||||| ||||||||||||    
T  10032359 ccatttaggatcttggatgaatgacatgtgacaaaaaaggattcaatgattcagattaaaaataaacaaa 10032290  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 217
Target Start/End: Original strand, 55203347 - 55203399
Alignment:
Q  165 tgaatgacatgtggtagaaaaagatttaatgattcagatttaaaataaacaaa 217  Q
    |||||||||||||| |||||  |||| |||| |||||||| ||||||||||||    
T  55203347 tgaatgacatgtggaagaaagggattcaatggttcagattaaaaataaacaaa 55203399  T

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Target: scaffold0060 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 137 - 217
Target Start/End: Original strand, 11139 - 11220
Alignment:
Q  137 ctccatttaccccatttagggtgttggatgaatgacatgtggtagaaaaa-gatttaatgattcagatttaaaataaacaaa 217  Q
    ||||||||||||||||||||||  |||||||||||||||||||| ||||| |||| |||| |||||||| ||||||| ||||    
T  11139 ctccatttaccccatttagggtcatggatgaatgacatgtggtaaaaaaaggattcaatggttcagattaaaaataatcaaa 11220  T

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Target: scaffold0060; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 189
Target Start/End: Complemental strand, 13402 - 13346
Alignment:
Q  133 tatgctccatttaccccatttagggtgttggatgaatgacatgtggtagaaaaagat 189  Q
    |||||||||||||||||||||||| | ||||||| | |||| |||| | ||||||||    
T  13402 tatgctccatttaccccatttaggatcttggatgcaagacacgtggcaaaaaaagat 13346  T

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Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 136 - 217
Target Start/End: Original strand, 48986012 - 48986093
Alignment:
Q  136 gctccatttaccccatttagggtgttggatgaatgacatgtggtagaaaaagatttaatgattcagatttaaaataaacaaa 217  Q
    |||||||||||| |||||||||| |||||||| |||||||||| | |||  |||| ||||||||||||| ||||||||||||    
T  48986012 gctccatttacctcatttagggtcttggatgagtgacatgtggcaaaaatggattcaatgattcagattaaaaataaacaaa 48986093  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 136 - 217
Target Start/End: Complemental strand, 48990986 - 48990905
Alignment:
Q  136 gctccatttaccccatttagggtgttggatgaatgacatgtggtagaaaaagatttaatgattcagatttaaaataaacaaa 217  Q
    ||||||||||||||||||||||| |||||||| |||||||||| | |||  |||| |||| |||||||| ||||||||||||    
T  48990986 gctccatttaccccatttagggtcttggatgagtgacatgtggcaaaaatggattcaatggttcagattaaaaataaacaaa 48990905  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 137 - 217
Target Start/End: Complemental strand, 25492079 - 25491999
Alignment:
Q  137 ctccatttaccccatttagggtgttggatgaatgacatgtggtagaaaaagatttaatgattcagatttaaaataaacaaa 217  Q
    |||||| ||||||||||||||| |||||||| ||| |||||| | |||  |||| |||| |||||||| ||||||||||||    
T  25492079 ctccatataccccatttagggtcttggatgagtgatatgtggcaaaaatggattcaatggttcagattaaaaataaacaaa 25491999  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 141 - 217
Target Start/End: Original strand, 52433006 - 52433082
Alignment:
Q  141 atttaccccatttagggtgttggatgaatgacatgtggtagaaaaagatttaatgattcagatttaaaataaacaaa 217  Q
    |||||||||||||||||| |||||||||||||| |||| | |||   ||| |||| |||||||| ||||||||||||    
T  52433006 atttaccccatttagggtcttggatgaatgacacgtggcacaaatgaattcaatggttcagattaaaaataaacaaa 52433082  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 133 - 178
Target Start/End: Complemental strand, 19880817 - 19880772
Alignment:
Q  133 tatgctccatttaccccatttagggtgttggatgaatgacatgtgg 178  Q
    |||||||||||||||||||||||||| |||||||| ||||| ||||    
T  19880817 tatgctccatttaccccatttagggtcttggatgactgacaagtgg 19880772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 133 - 178
Target Start/End: Original strand, 8740466 - 8740511
Alignment:
Q  133 tatgctccatttaccccatttagggtgttggatgaatgacatgtgg 178  Q
    |||||||||||||||||||||||||| |||||||||||||||||||    
T  8740466 tatgctccatttaccccatttagggtattggatgaatgacatgtgg 8740511  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 137 - 212
Target Start/End: Original strand, 21632565 - 21632641
Alignment:
Q  137 ctccatttaccccatttagggtgttggatgaatgacatgtggtagaaaaag-atttaatgattcagatttaaaataa 212  Q
    ||||||||||||||||||||||  |||||||||||||| ||||| | |||| ||| |||| |||||||| |||||||    
T  21632565 ctccatttaccccatttagggtcatggatgaatgacatctggtaaataaagaattcaatggttcagattaaaaataa 21632641  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 137 - 212
Target Start/End: Original strand, 21640812 - 21640888
Alignment:
Q  137 ctccatttaccccatttagggtgttggatgaatgacatgtggtagaaaaag-atttaatgattcagatttaaaataa 212  Q
    ||||||||||||||||||||||  |||||||||||||| ||||| | |||| ||| |||| |||||||| |||||||    
T  21640812 ctccatttaccccatttagggtcatggatgaatgacatctggtaaataaagaattcaatggttcagattaaaaataa 21640888  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 133 - 178
Target Start/End: Complemental strand, 8740619 - 8740574
Alignment:
Q  133 tatgctccatttaccccatttagggtgttggatgaatgacatgtgg 178  Q
    ||||||||||||| |||||||| ||| |||||||||||||||||||    
T  8740619 tatgctccatttatcccatttaaggtcttggatgaatgacatgtgg 8740574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 135 - 206
Target Start/End: Complemental strand, 12258086 - 12258015
Alignment:
Q  135 tgctccatttaccccatttagggtgttggatgaatgacatgtggtagaaaaagatttaatgattcagattta 206  Q
    |||||||||||  ||||||||||| ||||||||| |||| |||| | |||||||||||||| || |||||||    
T  12258086 tgctccatttagaccatttagggttttggatgaaagacaagtggcaaaaaaagatttaatggttgagattta 12258015  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 217
Target Start/End: Complemental strand, 6356459 - 6356381
Alignment:
Q  139 ccatttaccccatttagggtgttggatgaatgacatgtggtagaaaaagatttaatgattcagatttaaaataaacaaa 217  Q
    ||||||||  |||||| ||| ||||||||||||||||||||| |||  |||| |||  |||||||||||||||| ||||    
T  6356459 ccatttactacatttaaggtcttggatgaatgacatgtggtaaaaatcgattcaattgttcagatttaaaataatcaaa 6356381  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 133 - 206
Target Start/End: Original strand, 12257327 - 12257400
Alignment:
Q  133 tatgctccatttaccccatttagggtgttggatgaatgacatgtggtagaaaaagatttaatgattcagattta 206  Q
    |||||||||||||  ||||||||||| ||||||||| |||| |||| | ||||||||| |||| || |||||||    
T  12257327 tatgctccatttagaccatttagggtcttggatgaaagacaagtggcaaaaaaagattcaatggttgagattta 12257400  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 217
Target Start/End: Complemental strand, 34374875 - 34374792
Alignment:
Q  133 tatgctccatttaccccatttagggtgttggatgaatgacatgtggtagaaaaagatttaatgattcagatttaaaataaacaaa 217  Q
    ||||||||||||||||||| ||  || || ||||||||||| |||| | ||||| ||| |||| |||||||| ||||||||||||    
T  34374875 tatgctccatttaccccatctaaagtcttagatgaatgacacgtgg-aaaaaaatattcaatggttcagattaaaaataaacaaa 34374792  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 217
Target Start/End: Complemental strand, 18259285 - 18259217
Alignment:
Q  150 atttagggtgttggatgaatgacatgtggtagaaaaagatttaatgattcagattt-aaaataaacaaa 217  Q
    ||||||| | ||||||||||||||||||| | ||||||||| |||| |||| |||| ||||||||||||    
T  18259285 atttaggatcttggatgaatgacatgtggcaaaaaaagattcaatggttcatatttaaaaataaacaaa 18259217  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 134 - 209
Target Start/End: Complemental strand, 34227314 - 34227240
Alignment:
Q  134 atgctccatttaccccatttagggtgttggatgaatgacatgtggtagaaaaagatttaatgattcagatttaaaa 209  Q
    ||||||||||||  |||||||||   ||||||||||||||||||||| ||||| | | |||| |||||||||||||    
T  34227314 atgctccatttagtccatttaggac-ttggatgaatgacatgtggtaaaaaaaaaatcaatggttcagatttaaaa 34227240  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 217
Target Start/End: Original strand, 10257744 - 10257812
Alignment:
Q  150 atttagggtgttggatgaatgacatgtggtagaaaaagatttaatgattcagattt-aaaataaacaaa 217  Q
    ||||||||| || |||||||||||||||| | ||||  ||| |||| ||||||||| ||||||||||||    
T  10257744 atttagggtcttagatgaatgacatgtggcaaaaaataattaaatggttcagatttaaaaataaacaaa 10257812  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 220
Target Start/End: Original strand, 22563238 - 22563321
Alignment:
Q  136 gctccatttaccccatttagggtgttggatgaatgacatgtggtagaaaaagatttaatgattcagatttaaaataaacaaacaa 220  Q
    ||||||||||| ||||||||||| ||||||| | ||||||||| | ||||| |||||| | || |||||| |||| || ||||||    
T  22563238 gctccatttactccatttagggt-ttggatgcaagacatgtggcaaaaaaatatttaacggttgagattttaaattaaaaaacaa 22563321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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