View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0749_low_4 (Length: 582)
Name: NF0749_low_4
Description: NF0749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0749_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 30 - 325
Target Start/End: Original strand, 33422313 - 33422610
Alignment:
| Q |
30 |
gtccctgccgtatgattcgtcccataattgatgagctagcaaaggaatatgctggtaagctcaagtgttacaaac---atactgatgaaagtccttcaac |
126 |
Q |
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| T |
33422313 |
gtccctgccgcatgattcatcccataattgatgagctagcaaaggaatatgcgggtaagctcaagtgttacaaactcaacactgatgaaagtccttcagt |
33422412 |
T |
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| Q |
127 |
agctactcggtatgggatttgaagtattccaacagtcattttcttcaagaaaggtgaaaagaaagatacagttattgttgctgtgcccaaagcaaacatt |
226 |
Q |
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| T |
33422413 |
tgctactcggtatgggattcgaagtattccaactgtcattttcttcaagaacggtgaaaagaaagatacagttattggtgctgtgccaaaagcaa-catt |
33422511 |
T |
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| Q |
227 |
gaccacagatatagaaaaattcctgtgagatggcagacaaagaaggcttcagctggaagtaaagttatttttcccattagcgacatatcatcaagccaa |
325 |
Q |
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| T |
33422512 |
gaccacaaatatagaaaaattcctgtgagatggcagacaaagaaggcttcagctggaagtaaagttatttttcccattagcgacatatcatcaagccaa |
33422610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 407 - 546
Target Start/End: Original strand, 33858439 - 33858577
Alignment:
| Q |
407 |
agtcctgccttctgttacaaaacacagcagaagcaaagaacaagcagnnnnnnnnnnngcacagttacaagggaggcgcggacaaagccaatcaccaaaa |
506 |
Q |
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| T |
33858439 |
agtcctgccttctgttacaaaacacagcagaagcaaagaacaagtagaaaaaaagca--cacagttacaagggaggcgcggacaaagccaatcaccaaaa |
33858536 |
T |
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| Q |
507 |
cagaagctatac-aaaaaccccccttaaaaccggaccagcc |
546 |
Q |
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| T |
33858537 |
cagaagctatacaaaaaaccccccttaaaaccggaccagcc |
33858577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 53 - 216
Target Start/End: Original strand, 20543513 - 20543679
Alignment:
| Q |
53 |
ataattgatgagctagcaaaggaatatgctggtaagctcaagtgttacaaac---atactgatgaaagtccttcaacagctactcggtatgggatttgaa |
149 |
Q |
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||||||||||| ||||||| ||||| | || || |||||||||||||||| |||| ||||| ||||||||||| ||||| ||||| || ||| ||| |
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| T |
20543513 |
ataattgatgaactagcaatacaatatacgggaaaactcaagtgttacaaactcaataccgatgagagtccttcaactgctacccggtacggaattcgaa |
20543612 |
T |
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| Q |
150 |
gtattccaacagtcattttcttcaagaaaggtgaaaagaaagatacagttattgttgctgtgcccaa |
216 |
Q |
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| T |
20543613 |
gtattccgacagttatgatcttcaaagatggtgagaaaaaagacacagttattggagctgtgcccaa |
20543679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 407
Target Start/End: Complemental strand, 16989933 - 16989885
Alignment:
| Q |
358 |
aagccaagcaccagaagtgcaaaaagaggctagctgttacaacaaaacaa |
407 |
Q |
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| T |
16989933 |
aagccaagcaccggaagtgctaaaaga-gctagctgttacaaccaaacaa |
16989885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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