View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0749_low_45 (Length: 240)

Name: NF0749_low_45
Description: NF0749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0749_low_45
NF0749_low_45
[»] scaffold0233 (1 HSPs)
scaffold0233 (5-107)||(17435-17540)
[»] chr5 (5 HSPs)
chr5 (5-91)||(26791845-26791931)
chr5 (5-107)||(26729265-26729369)
chr5 (5-107)||(26745413-26745516)
chr5 (5-107)||(26777957-26778062)
chr5 (5-56)||(26834466-26834517)
[»] scaffold0416 (1 HSPs)
scaffold0416 (5-107)||(7675-7780)
[»] scaffold0093 (1 HSPs)
scaffold0093 (8-91)||(20822-20905)
[»] scaffold0112 (2 HSPs)
scaffold0112 (5-89)||(17466-17550)
scaffold0112 (5-107)||(26153-26261)
[»] chr3 (8 HSPs)
chr3 (8-107)||(13042253-13042355)
chr3 (8-107)||(13050330-13050432)
chr3 (5-59)||(30137397-30137451)
chr3 (5-59)||(30143526-30143580)
chr3 (5-59)||(30146948-30147002)
chr3 (5-96)||(12109441-12109532)
chr3 (5-59)||(30069338-30069392)
chr3 (5-59)||(30132579-30132633)
[»] scaffold0759 (1 HSPs)
scaffold0759 (5-106)||(2032-2137)
[»] chr6 (1 HSPs)
chr6 (5-41)||(35162547-35162583)


Alignment Details
Target: scaffold0233 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0233
Description:

Target: scaffold0233; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 5 - 107
Target Start/End: Original strand, 17435 - 17540
Alignment:
Q  5 ttctttcttttgatcaaacaatgacttatgttaagctcgctattttggctgtcttgcat-cttaccatattctgtatgtata---ttttttaacattgcg 100  Q
    ||||||||||||||||||||||| |||||||||||||| ||| |||||||||||| ||| || |||||||||||||||||||   |||||||||||||||    
T  17435 ttctttcttttgatcaaacaatgtcttatgttaagctctctactttggctgtctt-catgctcaccatattctgtatgtatatttttttttaacattgcg 17533  T
Q  101 ttcatct 107  Q
     ||||||    
T  17534 ctcatct 17540  T

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Target: chr5 (Bit Score: 56; Significance: 2e-23; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 5 - 91
Target Start/End: Original strand, 26791845 - 26791931
Alignment:
Q  5 ttctttcttttgatcaaacaatgacttatgttaagctcgctattttggctgtcttgcat-cttaccatattctgtatgtatatttttt 91  Q
    ||||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||| || |||| ||||||||||||||||||||    
T  26791845 ttctttcttttgatcaaacaatgacttatgttaagcttgctaatttggctgtctt-catgctcaccacattctgtatgtatatttttt 26791931  T

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Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 5 - 107
Target Start/End: Original strand, 26729265 - 26729369
Alignment:
Q  5 ttctttcttttgatcaaacaatgacttatgttaagctcgctattttggctgtcttgcat-cttaccatattctgtatgtata--ttttttaacattgcgt 101  Q
    |||||| ||||||||||| ||||||||||||||||||||||| |||||||||||| ||| || |||| ||||||||||||||  ||||||||||||| ||    
T  26729265 ttctttattttgatcaaagaatgacttatgttaagctcgctactttggctgtctt-catgctcaccacattctgtatgtatattttttttaacattgtgt 26729363  T
Q  102 tcatct 107  Q
    ||||||    
T  26729364 tcatct 26729369  T

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Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 5 - 107
Target Start/End: Original strand, 26745413 - 26745516
Alignment:
Q  5 ttctttcttttgatcaaacaatgacttatgttaagctcgctattttggctgtcttgcat-cttaccatattctgtatgtat-attttttaacattgcgtt 102  Q
    ||||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||| || || ||||||||||||||| ||||||||| ||||  ||    
T  26745413 ttctttcttttgatcaaacaatgacttatgttaagcttgctactttggctgtctt-catgctcactatattctgtatgtataattttttaaaattgtatt 26745511  T
Q  103 catct 107  Q
    |||||    
T  26745512 catct 26745516  T

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Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 5 - 107
Target Start/End: Complemental strand, 26778062 - 26777957
Alignment:
Q  5 ttctttcttttgatcaaacaatgacttatgttaagctcgctattttggctgtcttgcat-cttaccatattctgtatgtata---ttttttaacattgcg 100  Q
    ||||||||||||||||||||||||||||||||||||| | || |||||||||||| ||| || |||| ||||||||||||||   |||||||||||||||    
T  26778062 ttctttcttttgatcaaacaatgacttatgttaagcttgttactttggctgtctt-catgctcaccacattctgtatgtatatttttttttaacattgcg 26777964  T
Q  101 ttcatct 107  Q
     ||||||    
T  26777963 ctcatct 26777957  T

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Target: chr5; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 5 - 56
Target Start/End: Original strand, 26834466 - 26834517
Alignment:
Q  5 ttctttcttttgatcaaacaatgacttatgttaagctcgctattttggctgt 56  Q
    ||||||||||||||||||||||||||||||||||||| |||| |||||||||    
T  26834466 ttctttcttttgatcaaacaatgacttatgttaagcttgctactttggctgt 26834517  T

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Target: scaffold0416 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0416
Description:

Target: scaffold0416; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 5 - 107
Target Start/End: Complemental strand, 7780 - 7675
Alignment:
Q  5 ttctttcttttgatcaaacaatgacttatgttaagctcgctattttggctgtcttgcat-cttaccatattctgtatgtata---ttttttaacattgcg 100  Q
    |||||| |||||||||||||||||||||||||||||| |||| |||||||||||| ||| || |||| ||||||||||||||   |||||||||||||||    
T  7780 ttctttattttgatcaaacaatgacttatgttaagcttgctaatttggctgtctt-catgctcaccacattctgtatgtatatttttttttaacattgcg 7682  T
Q  101 ttcatct 107  Q
     ||||||    
T  7681 ctcatct 7675  T

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Target: scaffold0093 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 8 - 91
Target Start/End: Original strand, 20822 - 20905
Alignment:
Q  8 tttcttttgatcaaacaatgacttatgttaagctcgctattttggctgtcttgcat-cttaccatattctgtatgtatatttttt 91  Q
    |||||||||||||||||||||||||||||||||| | || |||||||||||| ||| || |||| ||||||||||||||||||||    
T  20822 tttcttttgatcaaacaatgacttatgttaagcttgttactttggctgtctt-catgctcaccacattctgtatgtatatttttt 20905  T

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Target: scaffold0112 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 89
Target Start/End: Complemental strand, 17550 - 17466
Alignment:
Q  5 ttctttcttttgatcaaacaatgacttatgttaagctcgctattttggctgtcttgcat-cttaccatattctgtatgtatatttt 89  Q
    |||||||||||||||||||||||||||||||||| || | || |||||||||||| ||| || |||||||| ||||||||||||||    
T  17550 ttctttcttttgatcaaacaatgacttatgttaaacttgttactttggctgtctt-catgctcaccatattttgtatgtatatttt 17466  T

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Target: scaffold0112; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 107
Target Start/End: Complemental strand, 26261 - 26153
Alignment:
Q  5 ttctttcttttgatcaaacaa----tgacttatgttaagctcgctattttggctgtcttgcat-cttaccatattctgtatgtatatttt--ttaacatt 97  Q
    |||||||||||||||||||||    |||||||||||||||| | || || ||||||||| ||| || |||| ||||||||||||||||||  ||||||||    
T  26261 ttctttcttttgatcaaacaaacaatgacttatgttaagcttgttacttcggctgtctt-catgctcaccacattctgtatgtatatttttcttaacatt 26163  T
Q  98 gcgttcatct 107  Q
    ||| ||||||    
T  26162 gcgctcatct 26153  T

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Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 107
Target Start/End: Complemental strand, 13042355 - 13042253
Alignment:
Q  8 tttcttttgatcaaacaatgacttatgttaagctcgctattttggctgtcttgcat-cttaccatattctgtatgtata---ttttttaacattgcgttc 103  Q
    |||||||||||||||||||||||||||||||||| |||| ||||||||| || ||| || || | ||||||||||||||   ||||||||||||||| ||    
T  13042355 tttcttttgatcaaacaatgacttatgttaagcttgctactttggctgt-tttcatgctcacgacattctgtatgtatattgttttttaacattgcgctc 13042257  T
Q  104 atct 107  Q
    ||||    
T  13042256 atct 13042253  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 107
Target Start/End: Complemental strand, 13050432 - 13050330
Alignment:
Q  8 tttcttttgatcaaacaatgacttatgttaagctcgctattttggctgtcttgcat-cttaccatattctgtatgtata---ttttttaacattgcgttc 103  Q
    |||||||||||||||||||||||||||||||||| |||| ||||||||| || ||| || || | ||||||||||||||   ||||||||||||||| ||    
T  13050432 tttcttttgatcaaacaatgacttatgttaagcttgctactttggctgt-tttcatgctcacgacattctgtatgtatattgttttttaacattgcgctc 13050334  T
Q  104 atct 107  Q
    ||||    
T  13050333 atct 13050330  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 59
Target Start/End: Complemental strand, 30137451 - 30137397
Alignment:
Q  5 ttctttcttttgatcaaacaatgacttatgttaagctcgctattttggctgtctt 59  Q
    ||||||||||||||  ||||||||||||||||||||| |||  ||||||||||||    
T  30137451 ttctttcttttgatagaacaatgacttatgttaagctagctcctttggctgtctt 30137397  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 59
Target Start/End: Complemental strand, 30143580 - 30143526
Alignment:
Q  5 ttctttcttttgatcaaacaatgacttatgttaagctcgctattttggctgtctt 59  Q
    ||||||||||||||  ||||||||||||||||||||| |||  ||||||||||||    
T  30143580 ttctttcttttgatagaacaatgacttatgttaagctagctcctttggctgtctt 30143526  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 59
Target Start/End: Complemental strand, 30147002 - 30146948
Alignment:
Q  5 ttctttcttttgatcaaacaatgacttatgttaagctcgctattttggctgtctt 59  Q
    ||||||||||||||  ||||||||||||||||||||| |||  ||||||||||||    
T  30147002 ttctttcttttgatagaacaatgacttatgttaagctagctcctttggctgtctt 30146948  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 96
Target Start/End: Original strand, 12109441 - 12109532
Alignment:
Q  5 ttctttcttttgatcaaacaatgacttatgttaagctcgctattttggctgtcttgcatcttaccatattctgtatgtatattttttaacat 96  Q
    ||||||||| |||| |||||||||||||||||||||||  || ||||||| | || |   |||||| | ||||||||||| | |||||||||    
T  12109441 ttctttcttctgattaaacaatgacttatgttaagctcattactttggctctattcctggttaccacactctgtatgtatttcttttaacat 12109532  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 59
Target Start/End: Complemental strand, 30069392 - 30069338
Alignment:
Q  5 ttctttcttttgatcaaacaatgacttatgttaagctcgctattttggctgtctt 59  Q
    ||||||||||||||||| ||||| ||||||||||||| |||  ||| ||||||||    
T  30069392 ttctttcttttgatcaatcaatggcttatgttaagctagctccttttgctgtctt 30069338  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 59
Target Start/End: Complemental strand, 30132633 - 30132579
Alignment:
Q  5 ttctttcttttgatcaaacaatgacttatgttaagctcgctattttggctgtctt 59  Q
    ||||||||||||||  ||||||||||||||||||||| |||  ||| ||||||||    
T  30132633 ttctttcttttgatagaacaatgacttatgttaagcttgctccttttgctgtctt 30132579  T

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Target: scaffold0759 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0759
Description:

Target: scaffold0759; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 106
Target Start/End: Original strand, 2032 - 2137
Alignment:
Q  5 ttctttcttttgatcaaacaatgact--tatgttaagctcgctattttggctgtcttgcat-cttaccatattctgtatg--tatattttttaacattgc 99  Q
    |||||| |||||||||||||||||||  ||||||||||||| || |||||||||||| ||| || |||| ||||||||||  ||||||||||||| |||     
T  2032 ttctttattttgatcaaacaatgacttatatgttaagctcgttactttggctgtctt-catgctcaccacattctgtatgtatatattttttaactttgt 2130  T
Q  100 gttcatc 106  Q
    |||||||    
T  2131 gttcatc 2137  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 41
Target Start/End: Original strand, 35162547 - 35162583
Alignment:
Q  5 ttctttcttttgatcaaacaatgacttatgttaagct 41  Q
    ||||||||||||||||||||||| ||| |||||||||    
T  35162547 ttctttcttttgatcaaacaatggcttctgttaagct 35162583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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