View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0749_low_6 (Length: 561)

Name: NF0749_low_6
Description: NF0749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0749_low_6
NF0749_low_6
[»] chr4 (2 HSPs)
chr4 (51-530)||(41337155-41337634)
chr4 (94-144)||(47192725-47192775)
[»] chr7 (1 HSPs)
chr7 (94-140)||(42496885-42496931)
[»] chr2 (2 HSPs)
chr2 (94-140)||(16419947-16419993)
chr2 (94-140)||(16246638-16246684)
[»] chr5 (1 HSPs)
chr5 (94-144)||(22816842-22816892)
[»] chr3 (1 HSPs)
chr3 (95-149)||(1836467-1836521)
[»] chr8 (1 HSPs)
chr8 (208-245)||(2817551-2817588)


Alignment Details
Target: chr4 (Bit Score: 431; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 51 - 530
Target Start/End: Complemental strand, 41337634 - 41337155
Alignment:
Q  51 aagaagaacatgattgttgtatttctaaccttactagctagtggtgttgtcaaatattggtcatggcggatatcggtggcggatttttggctttatgcct 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||    
T  41337634 aagaagaacatgattgttgtatttctaaccttactagctagtggtgttgtcaaatattggtcatggcggatatcgatggcgggtttttggctttatgcct 41337535  T
Q  151 ttcttccatggccgattttgtgaaggatggcgggccataatcaaatatggcgcaccatatgtcagatttttggctctccaccatggtccaccatcaacaa 250  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41337534 ttcttccatggccgattttgtgaaggacggcgggccataatcaaatatggcgcaccatatgtcagatttttggctctccaccatggtccaccatcaacaa 41337435  T
Q  251 cactgattattagatatattgattactagatatattgttcttcacatagagtaaggtacaccttaacctcaccggtgaagttgaacatccttcaactact 350  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41337434 cactgattattagatatattgattactagatatattgttcttcacatagagtaaggtacaccttaacctcaccggtgaagttgaacatccttcaactact 41337335  T
Q  351 taaaatgaaagtaataaaacaagcattggcactttttataatggttttnnnnnnntgccatattacaaagtttgatagcatttcctaattcctatatttt 450  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||    
T  41337334 taaaatgaaagcaataaaacaagcattggcactttttataatggtttaaaaaaaatgccatattacaaagtttgatagcatttcctaattcctatatttt 41337235  T
Q  451 tcaggaaattatggtgaagaaatatatatcaaacacaattatgaatgatcactaagtgcaccaataaatttgatctgtgc 530  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41337234 tcaggaaattacagtgaagaaatatatatcaaacacaattatgaatgatcactaagtgcaccaataaatttgatctgtgc 41337155  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 94 - 144
Target Start/End: Complemental strand, 47192775 - 47192725
Alignment:
Q  94 gtgttgtcaaatattggtcatggcggatatcggtggcggatttttggcttt 144  Q
    ||||||||||||||||| |||||| |||||||||||| | |||||||||||    
T  47192775 gtgttgtcaaatattggccatggcagatatcggtggcaggtttttggcttt 47192725  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 94 - 140
Target Start/End: Complemental strand, 42496931 - 42496885
Alignment:
Q  94 gtgttgtcaaatattggtcatggcggatatcggtggcggatttttgg 140  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||||    
T  42496931 gtgttgtcaaatattagtcatggcggatgtcggtggcggatttttgg 42496885  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 94 - 140
Target Start/End: Complemental strand, 16419993 - 16419947
Alignment:
Q  94 gtgttgtcaaatattggtcatggcggatatcggtggcggatttttgg 140  Q
    ||||||||||||||  |||||||||||||||||||| ||||||||||    
T  16419993 gtgttgtcaaatatcagtcatggcggatatcggtggtggatttttgg 16419947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 94 - 140
Target Start/End: Original strand, 16246638 - 16246684
Alignment:
Q  94 gtgttgtcaaatattggtcatggcggatatcggtggcggatttttgg 140  Q
    ||||||||||||||| | |||| |||||||||| |||||||||||||    
T  16246638 gtgttgtcaaatattagccatgacggatatcggcggcggatttttgg 16246684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 94 - 144
Target Start/End: Complemental strand, 22816892 - 22816842
Alignment:
Q  94 gtgttgtcaaatattggtcatggcggatatcggtggcggatttttggcttt 144  Q
    |||||||||||||| || ||||||||||| | ||||||| |||||||||||    
T  22816892 gtgttgtcaaatatcggccatggcggatagcagtggcggttttttggcttt 22816842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 95 - 149
Target Start/End: Original strand, 1836467 - 1836521
Alignment:
Q  95 tgttgtcaaatattggtcatggcggatatcggtggcggatttttggctttatgcc 149  Q
    |||||||||||||  | |||||||||||||| |||||| ||||||||||| ||||    
T  1836467 tgttgtcaaatatcagccatggcggatatcgttggcgggtttttggctttctgcc 1836521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 245
Target Start/End: Complemental strand, 2817588 - 2817551
Alignment:
Q  208 tatgtcagatttttggctctccaccatggtccaccatc 245  Q
    |||| ||| |||||||||||||||||||||||||||||    
T  2817588 tatggcaggtttttggctctccaccatggtccaccatc 2817551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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