View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0749_low_7 (Length: 559)
Name: NF0749_low_7
Description: NF0749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0749_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 79 - 531
Target Start/End: Complemental strand, 656516 - 656064
Alignment:
| Q |
79 |
aatatgagacatgtttggagaagttggtgcactttgttgtaggcctcaaaattttacatacagaaccaagactctaacacagcttctgaggctgaaaacc |
178 |
Q |
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| T |
656516 |
aataggagacatgtttggagaagttggtgcactttgttgtaggcctcaaaattttacatacagaaccaagactctaacacagcttctgaggctgaaaacc |
656417 |
T |
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| Q |
179 |
aataatcttatagaagcaatgcagattaaaaaagaagacaatatactaatactcaaaaatttccttcaggttggtaactgtcttggcttgtgagtaacta |
278 |
Q |
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| T |
656416 |
aataatcttatagaagcaatgcagattaaaaaagaagacaatatactaatactcaaaaatttccttcaggttggtaactgtcttggcttgtgagtaatta |
656317 |
T |
|
| Q |
279 |
tttattactagtcataatgcttattatgatttccattctaaagcttatacatcataatgtgatacaatttcagcatttcaagcagcttaaggatttgagt |
378 |
Q |
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| T |
656316 |
tttattactagtcataatgcttattatgatttccattctaaagtttatacatcataatgtgatacaatttcagcatttcaagcagcttaaggatttgagt |
656217 |
T |
|
| Q |
379 |
atcaaagatttaatggtggaaaatgtggaggaagacgatcctaacatggctgtgaatttgttaactgtggccagcacaggcaatgctgcttttctcgagg |
478 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
656216 |
atcaaagatttaatggtggaaaatgtggaggaagacgatcctaacatggctgtgaatttgttaactgtggccagcacaggcaatgctgcttttctcgagg |
656117 |
T |
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| Q |
479 |
agcttctaagagctagtttggatcccgacataggagactcaaaagaaaaaact |
531 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
656116 |
agcttctaagagctggtttggatcccgacataggagactcaaaagaaaaaact |
656064 |
T |
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