View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0749_low_9 (Length: 545)
Name: NF0749_low_9
Description: NF0749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0749_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 1 - 476
Target Start/End: Complemental strand, 42342270 - 42341796
Alignment:
| Q |
1 |
tgtttcagttgagaattctcttctcttaattgattcagttctgcttctaattcaactgtataggcctgcnnnnnnnnnnnnnnnnnntgtgtcacaaagg |
100 |
Q |
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| T |
42342270 |
tgtttcagttgagaattctcttctcttaattgattcagttctgcttctaattcaactgtataggcctgcaaaagcaacaaagaaaaatgtgtcacaaagg |
42342171 |
T |
|
| Q |
101 |
agtcacattaacaatataatggcaaatattaaactagattaaacatactatttctaatttggatgtaaagagttgataaaaaattgacatattaccaatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42342170 |
agtcacattaacaatataatggcaaatattaaactagattaaacatactatttctaatttggatgtaaagagttgataaaaaattgacatattaccaatt |
42342071 |
T |
|
| Q |
201 |
cttcttaaactaatgttaccttcaatagcatataaatataatgttgtattatcttgatcatatatacataagaatttcaaataattcatacatttgtgga |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42342070 |
cttcttaaactaatgttaccttcaatagcatataaatataatgctgtattatcttgatcatatatacataagaatttcaaataattcatacatttgtgga |
42341971 |
T |
|
| Q |
301 |
tacataattttagatttaagtataatatgattggttaaaatttcaggaacctgttttctggctctagatcttgctgctgactctctattcttgatcatcc |
400 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42341970 |
tacataattttaga-ttaagtataatatgattggttaaaatttcaggaacctgttttctggctctagatcttgctgctgactctctattcttgatcatcc |
42341872 |
T |
|
| Q |
401 |
tcctctgccttctctccaccaccctttcaacaggaccatcaaccatcctctttcttcctcgtaaaccattcatatc |
476 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42341871 |
tcctctgccttctctccaccaccctttcaacaggaccatcaaccatcctctttcttcctcgtaaaccattcatatc |
42341796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 9522496 - 9522550
Alignment:
| Q |
1 |
tgtttcagttgagaattctcttctcttaattgattcagttctgcttctaattcaa |
55 |
Q |
| |
|
||||||||| |||||| |||| |||||| ||||||| ||||||||||||||||| |
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| T |
9522496 |
tgtttcagtcaagaattatcttatcttaactgattcaattctgcttctaattcaa |
9522550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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