View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0750_high_1 (Length: 673)

Name: NF0750_high_1
Description: NF0750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0750_high_1
NF0750_high_1
[»] chr1 (16 HSPs)
chr1 (28-549)||(35706603-35707136)
chr1 (547-660)||(35707178-35707291)
chr1 (561-632)||(28689446-28689517)
chr1 (561-622)||(27140493-27140554)
chr1 (561-609)||(10199402-10199450)
chr1 (564-607)||(47877139-47877182)
chr1 (579-617)||(15361060-15361098)
chr1 (580-617)||(4700079-4700116)
chr1 (561-622)||(11639410-11639471)
chr1 (561-618)||(26184767-26184824)
chr1 (581-622)||(26461955-26461996)
chr1 (581-622)||(49373700-49373741)
chr1 (585-649)||(601029-601093)
chr1 (561-609)||(6292521-6292569)
chr1 (561-617)||(10854753-10854809)
chr1 (619-651)||(12477359-12477391)
[»] chr5 (13 HSPs)
chr5 (73-532)||(34198595-34199080)
chr5 (561-660)||(34198393-34198498)
chr5 (28-76)||(34199098-34199146)
chr5 (563-651)||(985599-985687)
chr5 (583-651)||(29116966-29117034)
chr5 (561-622)||(13604843-13604904)
chr5 (561-617)||(8177526-8177582)
chr5 (561-617)||(17258877-17258933)
chr5 (615-650)||(14599371-14599406)
chr5 (561-615)||(14331389-14331443)
chr5 (562-651)||(36774702-36774789)
chr5 (561-622)||(41957445-41957506)
chr5 (562-622)||(18543192-18543251)
[»] chr8 (6 HSPs)
chr8 (562-651)||(20672738-20672825)
chr8 (579-623)||(26284807-26284851)
chr8 (563-607)||(13000420-13000464)
chr8 (561-619)||(41606897-41606955)
chr8 (565-621)||(6950338-6950394)
chr8 (585-617)||(44617807-44617839)
[»] chr7 (7 HSPs)
chr7 (564-651)||(7244668-7244753)
chr7 (563-609)||(46082064-46082110)
chr7 (615-649)||(28340464-28340498)
chr7 (552-622)||(35267377-35267447)
chr7 (561-648)||(22551399-22551484)
chr7 (563-647)||(39539777-39539861)
chr7 (563-607)||(47134753-47134797)
[»] chr6 (10 HSPs)
chr6 (563-620)||(32386559-32386616)
chr6 (563-641)||(733173-733251)
chr6 (563-609)||(9027606-9027652)
chr6 (566-651)||(31583667-31583750)
chr6 (545-606)||(30004921-30004982)
chr6 (561-622)||(34939759-34939820)
chr6 (561-609)||(7785738-7785786)
chr6 (615-651)||(10154187-10154223)
chr6 (565-609)||(27909636-27909680)
chr6 (561-636)||(33887833-33887906)
[»] chr3 (10 HSPs)
chr3 (563-632)||(36200101-36200170)
chr3 (561-617)||(36101588-36101644)
chr3 (564-621)||(45432936-45432993)
chr3 (561-609)||(36139906-36139954)
chr3 (560-615)||(37825144-37825199)
chr3 (564-651)||(49586933-49587020)
chr3 (561-622)||(8933802-8933863)
chr3 (553-598)||(12923311-12923356)
chr3 (561-617)||(27290895-27290951)
chr3 (561-609)||(51206492-51206540)
[»] chr4 (7 HSPs)
chr4 (579-651)||(5131262-5131336)
chr4 (563-605)||(4691880-4691922)
chr4 (563-649)||(6428006-6428092)
chr4 (579-636)||(18628555-18628610)
chr4 (579-647)||(4191710-4191776)
chr4 (562-623)||(43824297-43824358)
chr4 (566-622)||(7694009-7694065)
[»] chr2 (6 HSPs)
chr2 (584-622)||(24097823-24097861)
chr2 (583-620)||(9395147-9395184)
chr2 (561-609)||(1647264-1647312)
chr2 (615-651)||(33192159-33192195)
chr2 (619-651)||(33942116-33942148)
chr2 (615-651)||(41851971-41852007)
[»] scaffold0003 (1 HSPs)
scaffold0003 (561-622)||(306341-306402)


Alignment Details
Target: chr1 (Bit Score: 413; Significance: 0; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 28 - 549
Target Start/End: Original strand, 35706603 - 35707136
Alignment:
Q  28 cactaaataccatcgtgaagtagccagtttcttcaaagatccttcattttagagctttgaacataggattgcattgga-----------tggacaaacac 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           |||||||||||    
T  35706603 cactaaataccatcgtgaagtagccagtttcttcaaagatccttcattttagagctttgaacataggattgcattggactattggagtatggacaaacac 35706702  T
Q  117 tgcctaatnnnnnnntgtcacaaaacaggtaaaactttcaatcagaatgataaaagcatgatgaaattgtttgtaataaaatgcaatgtttgcagatttg 216  Q
    ||||||||       ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  35706703 tgcctaataaaaaaatgtcacaaaacaggtaatactttcaatcaaaatgataaaagcatgatgaaattgtttgtaataacatgcaatgtttgcggatttg 35706802  T
Q  217 agttcactacattcacgcaatcacatagttgtcgacctggactgtcggatcaaattttagatgacatgtgttcctacttgaattac--caaagctgaaat 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |  | | |||||    
T  35706803 agttcactacattcacgcaatcacatagttgtcgacctggactgtcggatcaaattttagatgacatgtgttcctacttgaattttggcgcacc-gaaat 35706901  T
Q  315 gtggaccgtccacatcacgtgactgcgtaaaatgtgtaatttcttagctgcatgattccagatttaatgcttacaatggatttcgtccaatctaaattta 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35706902 gtggaccgtccacatcacgtgactgcgtaaaatgtgtaatttcttagctgcatgattccagatttaatgcttacaatggatttcgtccaatctaaattta 35707001  T
Q  415 ttgcagtcaccaatctgagaagttattcaaaacggatggatgagattcagattttcgtatttgtggaagtcacaatgtgagtcatccaatgacttaaatt 514  Q
    ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35707002 ttgcagtcaccaatctgagaagttattaaaaatggatggatgagattcagattttcgtatttgtggaagtcacaatgtgagtcatccaatgacttaaatt 35707101  T
Q  515 cactaaattgactactagtcctagattcaccgata 549  Q
    |||||||||||||||||||||||||||||||||||    
T  35707102 cactaaattgactactagtcctagattcaccgata 35707136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 547 - 660
Target Start/End: Original strand, 35707178 - 35707291
Alignment:
Q  547 ataccatttgagagagcttatgacatgcccacaagttgttttcagcatattttcataagctctacaggataacttacatgaaaacagtttgacttaattt 646  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35707178 ataccatttgagagagcttatgacatgcccacaagttgttttcagcatattttcataagctctacaggataacttacatgaaaacagtttgacttaattt 35707277  T
Q  647 tatctgtcatagaa 660  Q
    ||||||||||||||    
T  35707278 tatctgtcatagaa 35707291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 561 - 632
Target Start/End: Original strand, 28689446 - 28689517
Alignment:
Q  561 agcttatgacatgcccacaagttgttttcagcatattttcataagctctacaggataacttacatgaaaaca 632  Q
    ||||||||||||| ||| |||||||||||||| |||||||||||||| | || |||| |||| |||||||||    
T  28689446 agcttatgacatgtccataagttgttttcagcttattttcataagctttccaagatagcttatatgaaaaca 28689517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 561 - 622
Target Start/End: Complemental strand, 27140554 - 27140493
Alignment:
Q  561 agcttatgacatgcccacaagttgttttcagcatattttcataagctctacaggataactta 622  Q
    ||||||||||||| ||| |||||||||||||| ||||| |||||||||| || |||| ||||    
T  27140554 agcttatgacatgtccataagttgttttcagcttatttgcataagctctccatgatagctta 27140493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 561 - 609
Target Start/End: Original strand, 10199402 - 10199450
Alignment:
Q  561 agcttatgacatgcccacaagttgttttcagcatattttcataagctct 609  Q
    |||||||||||||  || |||||||||||||| ||||||||||||||||    
T  10199402 agcttatgacatgttcataagttgttttcagcttattttcataagctct 10199450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 564 - 607
Target Start/End: Complemental strand, 47877182 - 47877139
Alignment:
Q  564 ttatgacatgcccacaagttgttttcagcatattttcataagct 607  Q
    ||||||||||| || |||||||||||||| ||||||||||||||    
T  47877182 ttatgacatgctcataagttgttttcagcttattttcataagct 47877139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 579 - 617
Target Start/End: Complemental strand, 15361098 - 15361060
Alignment:
Q  579 aagttgttttcagcatattttcataagctctacaggata 617  Q
    |||||||||||||| |||||||||||||||| |||||||    
T  15361098 aagttgttttcagcttattttcataagctctccaggata 15361060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 580 - 617
Target Start/End: Original strand, 4700079 - 4700116
Alignment:
Q  580 agttgttttcagcatattttcataagctctacaggata 617  Q
    ||||||||||||| |||||||||||||||| |||||||    
T  4700079 agttgttttcagcttattttcataagctctccaggata 4700116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 561 - 622
Target Start/End: Original strand, 11639410 - 11639471
Alignment:
Q  561 agcttatgacatgcccacaagttgttttcagcatattttcataagctctacaggataactta 622  Q
    ||||||||||||| ||| ||| |||||| ||| ||||||||||||||||  || ||||||||    
T  11639410 agcttatgacatgtccataagctgtttttagcttattttcataagctctctagaataactta 11639471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 561 - 618
Target Start/End: Complemental strand, 26184824 - 26184767
Alignment:
Q  561 agcttatgacatgcccacaagttgttttcagcatattttcataagctctacaggataa 618  Q
    ||||||||||||| ||| ||| |||||||||  ||||| |||||||||| ||||||||    
T  26184824 agcttatgacatgtccataagctgttttcagattatttccataagctctccaggataa 26184767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 581 - 622
Target Start/End: Original strand, 26461955 - 26461996
Alignment:
Q  581 gttgttttcagcatattttcataagctctacaggataactta 622  Q
    |||||||||||| |||||||||||||||| ||||||| ||||    
T  26461955 gttgttttcagcttattttcataagctctgcaggatagctta 26461996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 581 - 622
Target Start/End: Original strand, 49373700 - 49373741
Alignment:
Q  581 gttgttttcagcatattttcataagctctacaggataactta 622  Q
    |||||||||||| |||||||||||||||||  ||||||||||    
T  49373700 gttgttttcagcttattttcataagctctattggataactta 49373741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 585 - 649
Target Start/End: Complemental strand, 601093 - 601029
Alignment:
Q  585 ttttcagcatattttcataagctctacaggataacttacatgaaaacagtttgacttaattttat 649  Q
    |||||||| ||||||||||| |||| ||||||| | || |||||||||  ||||||| |||||||    
T  601093 ttttcagcttattttcataaactctccaggatagcatatatgaaaacaacttgactttattttat 601029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 561 - 609
Target Start/End: Complemental strand, 6292569 - 6292521
Alignment:
Q  561 agcttatgacatgcccacaagttgttttcagcatattttcataagctct 609  Q
    |||||||||||||  || ||| |||||||||| ||||||||||||||||    
T  6292569 agcttatgacatgttcataagctgttttcagcttattttcataagctct 6292521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 561 - 617
Target Start/End: Complemental strand, 10854809 - 10854753
Alignment:
Q  561 agcttatgacatgcccacaagttgttttcagcatattttcataagctctacaggata 617  Q
    |||||||||||||  |||||| |||||||||| ||||||| |||||| | |||||||    
T  10854809 agcttatgacatgttcacaagctgttttcagcttattttcttaagctgttcaggata 10854753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 619 - 651
Target Start/End: Original strand, 12477359 - 12477391
Alignment:
Q  619 cttacatgaaaacagtttgacttaattttatct 651  Q
    ||||||||||||||||||||||| |||||||||    
T  12477359 cttacatgaaaacagtttgactttattttatct 12477391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 73 - 532
Target Start/End: Complemental strand, 34199080 - 34198595
Alignment:
Q  73 attttagagctttgaacataggattgcattgga---tggacaaacactgcctaatnnnnnnntgtcacaaaacaggtaaaactttcaatcagaatgataa 169  Q
    |||||||||||||||| ||||||||| ||||||   ||||| |||||||||||||       ||||||||||||||||||||||||||||| ||||||||    
T  34199080 attttagagctttgaatataggattggattggagtatggactaacactgcctaatacaaaaatgtcacaaaacaggtaaaactttcaatcaaaatgataa 34198981  T
Q  170 aagcatgatgaaattgtttgtaataaaatgcaatgtttgcagatttgagttcactacattcacgcaatcacatagttgtcgacctggactgtcggatcaa 269  Q
    |||||||| ||||||||||||||||| ||||||||||||| ||||| | |||||||| |||||||||| ||| | ||||||| || ||||||| ||||||    
T  34198980 aagcatgacgaaattgtttgtaataacatgcaatgtttgcggatttcaattcactacgttcacgcaattacagaattgtcgatctagactgtcagatcaa 34198881  T
Q  270 attttagatgacatgtgttcctacttgaatt------------accaaagctgaaatgtggaccgtccacatcacgtgactgcgtaaaatgtgtaatttc 357  Q
    ||||||||| |||||||||||||||||||||            |||||||| ||||| ||||| |||||||||| |||||||||||||||||||| ||||    
T  34198880 attttagattacatgtgttcctacttgaattttggcgcgaattaccaaagccgaaatatggactgtccacatcatgtgactgcgtaaaatgtgtactttc 34198781  T
Q  358 ttagctgcatgattccagatttaatgcttacaatggatttcgtccaatctaaatttattgcagtcaccaatctgagaagttattcaaaacggatggatga 457  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||| |||| |||||    
T  34198780 ttagctgcatgattccagatttaatgcttacaatggatttcgtccaatctaaatgtattgcagtaaccaatctgagaagttattaaaaaaggatcgatga 34198681  T
Q  458 gattcagattttcgtatttgtggaagtcacaatgtgagt-----------catccaatgacttaaattcactaaattgactactag 532  Q
     ||||| |||| |||||||| ||||||||||||||||||           |||||||||||||||||||||||||||||| |||||    
T  34198680 aattcaaatttccgtatttgcggaagtcacaatgtgagtcatctaatcttcatccaatgacttaaattcactaaattgacgactag 34198595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 561 - 660
Target Start/End: Complemental strand, 34198498 - 34198393
Alignment:
Q  561 agcttatgacatgcccacaagttgttttcagcatattttcataagctcta-----caggataacttacatgaaaacagtttgacttaattttatct-gtc 654  Q
    ||||| ||||||||||| |||||| |||||||||||||||||||||||||     ||| ||||||||||||||||||||||||||||||||||||| |||    
T  34198498 agcttgtgacatgcccataagttgctttcagcatattttcataagctctagtctacagaataacttacatgaaaacagtttgacttaattttatctagtc 34198399  T
Q  655 atagaa 660  Q
    ||||||    
T  34198398 atagaa 34198393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 28 - 76
Target Start/End: Complemental strand, 34199146 - 34199098
Alignment:
Q  28 cactaaataccatcgtgaagtagccagtttcttcaaagatccttcattt 76  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  34199146 cactaaataccatcgtgaagtagccagtttcttcaaagatccttcattt 34199098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 563 - 651
Target Start/End: Complemental strand, 985687 - 985599
Alignment:
Q  563 cttatgacatgcccacaagttgttttcagcatattttcataagctctacaggataacttacatgaaaacagtttgacttaattttatct 651  Q
    ||||||||||| |||||||  ||||||||| ||||| ||||  |||| || |||| ||||  ||||||||||||||||| |||||||||    
T  985687 cttatgacatgtccacaagcggttttcagcttatttccatagtctcttcatgatagcttatgtgaaaacagtttgactttattttatct 985599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 583 - 651
Target Start/End: Original strand, 29116966 - 29117034
Alignment:
Q  583 tgttttcagcatattttcataagctctacaggataacttacatgaaaacagtttgacttaattttatct 651  Q
    |||||||||| ||||| |||||||| | ||||||| |||| | |||||||||||||||| |||||||||    
T  29116966 tgttttcagcttatttgcataagcttttcaggatagcttatacgaaaacagtttgactttattttatct 29117034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 561 - 622
Target Start/End: Original strand, 13604843 - 13604904
Alignment:
Q  561 agcttatgacatgcccacaagttgttttcagcatattttcataagctctacaggataactta 622  Q
    ||||||||||||| ||| | |||||||||| | |||||||||||||||| || |||||||||    
T  13604843 agcttatgacatgtccatacgttgttttcaacttattttcataagctcttcaagataactta 13604904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 561 - 617
Target Start/End: Original strand, 8177526 - 8177582
Alignment:
Q  561 agcttatgacatgcccacaagttgttttcagcatattttcataagctctacaggata 617  Q
    ||||||||| ||| ||| |||||||||||||  |||||||||||||||| |||||||    
T  8177526 agcttatgatatgtccataagttgttttcaggttattttcataagctctccaggata 8177582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 561 - 617
Target Start/End: Original strand, 17258877 - 17258933
Alignment:
Q  561 agcttatgacatgcccacaagttgttttcagcatattttcataagctctacaggata 617  Q
    |||||||||||||  || ||| |||||||||| |||||||||||||||| |||||||    
T  17258877 agcttatgacatgttcataagctgttttcagcttattttcataagctcttcaggata 17258933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 615 - 650
Target Start/End: Original strand, 14599371 - 14599406
Alignment:
Q  615 ataacttacatgaaaacagtttgacttaattttatc 650  Q
    |||||||| |||||||||||||||||||||||||||    
T  14599371 ataacttatatgaaaacagtttgacttaattttatc 14599406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 561 - 615
Target Start/End: Complemental strand, 14331443 - 14331389
Alignment:
Q  561 agcttatgacatgcccacaagttgttttcagcatattttcataagctctacagga 615  Q
    ||||||||||||| ||| ||| || ||||||| |||||||||||||||| |||||    
T  14331443 agcttatgacatgtccataagctgatttcagcttattttcataagctctccagga 14331389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 562 - 651
Target Start/End: Original strand, 36774702 - 36774789
Alignment:
Q  562 gcttatgacatgcccacaagttgttttcagcatattttcataagctctacaggataacttacatgaaaacagtttgacttaattttatct 651  Q
    |||||||||||| ||  ||| || ||||||| ||||| |||||||||| ||||||| |||  || |||||||||||||||  ||||||||    
T  36774702 gcttatgacatgtcctaaagatggtttcagcttatttccataagctctccaggatagctt--ataaaaacagtttgactttgttttatct 36774789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 561 - 622
Target Start/End: Original strand, 41957445 - 41957506
Alignment:
Q  561 agcttatgacatgcccacaagttgttttcagcatattttcataagctctacaggataactta 622  Q
    ||||||||||||| ||| |||||||||||| | |||||||||||| |||  |||||| ||||    
T  41957445 agcttatgacatgtccataagttgttttcatcttattttcataagttctcaaggatagctta 41957506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 562 - 622
Target Start/End: Original strand, 18543192 - 18543251
Alignment:
Q  562 gcttatgacatgcccacaagttgttttcagcatattttcataagctctacaggataactta 622  Q
    |||||||||||| |||  ||||||||||||| || ||||||||||||| ||||||| ||||    
T  18543192 gcttatgacatgtccatgagttgttttcagctta-tttcataagctctccaggatagctta 18543251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 562 - 651
Target Start/End: Complemental strand, 20672825 - 20672738
Alignment:
Q  562 gcttatgacatgcccacaagttgttttcagcatattttcataagctctacaggataacttacatgaaaacagtttgacttaattttatct 651  Q
    ||||||||||||  || ||| |||||||||| |||||||||||||||| ||||||| |||  || ||||||||||||||| |||||||||    
T  20672825 gcttatgacatgttcataagctgttttcagcttattttcataagctctccaggatagctt--ataaaaacagtttgactttattttatct 20672738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 579 - 623
Target Start/End: Original strand, 26284807 - 26284851
Alignment:
Q  579 aagttgttttcagcatattttcataagctctacaggataacttac 623  Q
    |||||||||||||| |||||||||||||| |||||||||||||||    
T  26284807 aagttgttttcagcttattttcataagctatacaggataacttac 26284851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 563 - 607
Target Start/End: Original strand, 13000420 - 13000464
Alignment:
Q  563 cttatgacatgcccacaagttgttttcagcatattttcataagct 607  Q
    ||||||||||| |||||||||||||||||| ||||| ||||||||    
T  13000420 cttatgacatgtccacaagttgttttcagcttatttccataagct 13000464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 561 - 619
Target Start/End: Original strand, 41606897 - 41606955
Alignment:
Q  561 agcttatgacatgcccacaagttgttttcagcatattttcataagctctacaggataac 619  Q
    |||||||||||||  || |||||||||||||| ||||| ||||||||||  ||||||||    
T  41606897 agcttatgacatgttcaaaagttgttttcagcttatttccataagctctctaggataac 41606955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 565 - 621
Target Start/End: Complemental strand, 6950394 - 6950338
Alignment:
Q  565 tatgacatgcccacaagttgttttcagcatattttcataagctctacaggataactt 621  Q
    ||||||||| | | |||||||||||||| ||||| ||||||||||  ||||||||||    
T  6950394 tatgacatgtcgataagttgttttcagcttatttccataagctctttaggataactt 6950338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 585 - 617
Target Start/End: Original strand, 44617807 - 44617839
Alignment:
Q  585 ttttcagcatattttcataagctctacaggata 617  Q
    |||||||| ||||||||||||||||||||||||    
T  44617807 ttttcagcttattttcataagctctacaggata 44617839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 564 - 651
Target Start/End: Complemental strand, 7244753 - 7244668
Alignment:
Q  564 ttatgacatgcccacaagttgttttcagcatattttcataagctctacaggataacttacatgaaaacagtttgacttaattttatct 651  Q
    ||||||||||| || |||||||||||||| |||||||||||||||| ||  ||| |||  ||||||||||||||||||  ||||||||    
T  7244753 ttatgacatgctcataagttgttttcagcttattttcataagctctccaatatagctt--atgaaaacagtttgactttcttttatct 7244668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 563 - 609
Target Start/End: Complemental strand, 46082110 - 46082064
Alignment:
Q  563 cttatgacatgcccacaagttgttttcagcatattttcataagctct 609  Q
    ||||||||||| ||| |||||||||||||| ||||||||||||||||    
T  46082110 cttatgacatgaccataagttgttttcagcttattttcataagctct 46082064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 615 - 649
Target Start/End: Original strand, 28340464 - 28340498
Alignment:
Q  615 ataacttacatgaaaacagtttgacttaattttat 649  Q
    ||||||||||||||||||||||||||| |||||||    
T  28340464 ataacttacatgaaaacagtttgactttattttat 28340498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 552 - 622
Target Start/End: Complemental strand, 35267447 - 35267377
Alignment:
Q  552 atttgagagagcttatgacatgcccacaagttgttttcagcatattttcataagctctacaggataactta 622  Q
    |||||||| |||||||||||||  || | |||||||||||| |||||  ||||||||| || |||||||||    
T  35267447 atttgagaaagcttatgacatgttcataggttgttttcagcttatttctataagctctccaagataactta 35267377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 561 - 648
Target Start/End: Original strand, 22551399 - 22551484
Alignment:
Q  561 agcttatgacatgcccacaagttgttttcagcatattttcataagctctacaggataacttacatgaaaacagtttgacttaatttta 648  Q
    |||||||||||||  || | |||||||||||| ||||| |||||||||| || ||| ||||  ||||||| | |||||||| ||||||    
T  22551399 agcttatgacatgttcaaatgttgttttcagcttatttacataagctctccaagattactt--atgaaaagaatttgactttatttta 22551484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 563 - 647
Target Start/End: Original strand, 39539777 - 39539861
Alignment:
Q  563 cttatgacatgcccacaagttgttttcagcatattttcataagctctacaggataacttacatgaaaacagtttgacttaatttt 647  Q
    ||||||||||| ||| ||| |||||||||| |||||| | ||||||   |||||| |||| ||||||||| ||||| || |||||    
T  39539777 cttatgacatgtccataagctgttttcagcttattttgacaagctcccgaggatagcttatatgaaaacaatttgaatttatttt 39539861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 563 - 607
Target Start/End: Original strand, 47134753 - 47134797
Alignment:
Q  563 cttatgacatgcccacaagttgttttcagcatattttcataagct 607  Q
    ||||||||| | ||| |||||||||||||| ||||||||||||||    
T  47134753 cttatgacacgtccataagttgttttcagcttattttcataagct 47134797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 563 - 620
Target Start/End: Original strand, 32386559 - 32386616
Alignment:
Q  563 cttatgacatgcccacaagttgttttcagcatattttcataagctctacaggataact 620  Q
    ||||| ||||| |||||| ||||||||||| |||||||||||||||| ||||||||||    
T  32386559 cttataacatgtccacaacttgttttcagcttattttcataagctctccaggataact 32386616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 563 - 641
Target Start/End: Original strand, 733173 - 733251
Alignment:
Q  563 cttatgacatgcccacaagttgttttcagcatattttcataagctctacaggataacttacatgaaaacagtttgactt 641  Q
    ||||||||||| ||||||||||||||||||||||||  ||||| | |  |||||| |||| || |||||| ||||||||    
T  733173 cttatgacatgtccacaagttgttttcagcatatttctataagttttctaggatagcttatattaaaacaatttgactt 733251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 563 - 609
Target Start/End: Complemental strand, 9027652 - 9027606
Alignment:
Q  563 cttatgacatgcccacaagttgttttcagcatattttcataagctct 609  Q
    ||||||||||| ||| |||||||||||||| ||||||||||||||||    
T  9027652 cttatgacatgtccataagttgttttcagcttattttcataagctct 9027606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 566 - 651
Target Start/End: Complemental strand, 31583750 - 31583667
Alignment:
Q  566 atgacatgcccacaagttgttttcagcatattttcataagctctacaggataacttacatgaaaacagtttgacttaattttatct 651  Q
    |||||||| ||| |||||||||||| | ||||| |||||||| | | ||||| |||  ||||||||| |||||||| |||||||||    
T  31583750 atgacatgtccataagttgttttcaacttatttccataagcttttcgggatagctt--atgaaaacaatttgacttcattttatct 31583667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 545 - 606
Target Start/End: Complemental strand, 30004982 - 30004921
Alignment:
Q  545 cgataccatttgagagagcttatgacatgcccacaagttgttttcagcatattttcataagc 606  Q
    |||||| |||||||||||||||||| ||| ||| ||  |||||||||| ||||| |||||||    
T  30004982 cgatactatttgagagagcttatgaaatgtccataaactgttttcagcttatttccataagc 30004921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 561 - 622
Target Start/End: Complemental strand, 34939820 - 34939759
Alignment:
Q  561 agcttatgacatgcccacaagttgttttcagcatattttcataagctctacaggataactta 622  Q
    ||||||||||||| ||| || ||||||||||| ||||| ||||| |||| ||||||| ||||    
T  34939820 agcttatgacatgtccataaattgttttcagcttatttccataaactctccaggatagctta 34939759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 561 - 609
Target Start/End: Original strand, 7785738 - 7785786
Alignment:
Q  561 agcttatgacatgcccacaagttgttttcagcatattttcataagctct 609  Q
    ||||||||||||| | | |||||||||||||| ||||| ||||||||||    
T  7785738 agcttatgacatgtctataagttgttttcagcttatttccataagctct 7785786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 615 - 651
Target Start/End: Complemental strand, 10154223 - 10154187
Alignment:
Q  615 ataacttacatgaaaacagtttgacttaattttatct 651  Q
    |||||||| |||||||||||||||||| |||||||||    
T  10154223 ataacttatatgaaaacagtttgactttattttatct 10154187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 565 - 609
Target Start/End: Original strand, 27909636 - 27909680
Alignment:
Q  565 tatgacatgcccacaagttgttttcagcatattttcataagctct 609  Q
    ||||||||| ||| |||||||||||||| ||||| ||||||||||    
T  27909636 tatgacatgtccataagttgttttcagcttatttccataagctct 27909680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 561 - 636
Target Start/End: Complemental strand, 33887906 - 33887833
Alignment:
Q  561 agcttatgacatgcccacaagttgttttcagcatattttcataagctctacaggataacttacatgaaaacagttt 636  Q
    |||||||||||||  ||||||||||||||| | ||||| |||||||  | ||||||| |||  |||||||||||||    
T  33887906 agcttatgacatgttcacaagttgttttcaacttatttccataagcatttcaggatagctt--atgaaaacagttt 33887833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 563 - 632
Target Start/End: Complemental strand, 36200170 - 36200101
Alignment:
Q  563 cttatgacatgcccacaagttgttttcagcatattttcataagctctacaggataacttacatgaaaaca 632  Q
    ||||||||||| ||| |||||||||||||| ||||| ||| |||||||||||||| |||| | |||||||    
T  36200170 cttatgacatgtccataagttgttttcagcttatttccatgagctctacaggatagcttataagaaaaca 36200101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 561 - 617
Target Start/End: Complemental strand, 36101644 - 36101588
Alignment:
Q  561 agcttatgacatgcccacaagttgttttcagcatattttcataagctctacaggata 617  Q
    |||||||||||||  |||||| |||||||||| |||||||||||||||| |||||||    
T  36101644 agcttatgacatgttcacaagctgttttcagcttattttcataagctcttcaggata 36101588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 564 - 621
Target Start/End: Original strand, 45432936 - 45432993
Alignment:
Q  564 ttatgacatgcccacaagttgttttcagcatattttcataagctctacaggataactt 621  Q
    ||||||||||  || |||||||||||||| ||||| ||||||||||||||||| ||||    
T  45432936 ttatgacatgttcataagttgttttcagcttatttccataagctctacaggatgactt 45432993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 561 - 609
Target Start/End: Complemental strand, 36139954 - 36139906
Alignment:
Q  561 agcttatgacatgcccacaagttgttttcagcatattttcataagctct 609  Q
    |||||||||||||  |||||| |||||||||| ||||||||||||||||    
T  36139954 agcttatgacatgttcacaagctgttttcagcttattttcataagctct 36139906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 560 - 615
Target Start/End: Complemental strand, 37825199 - 37825144
Alignment:
Q  560 gagcttatgacatgcccacaagttgttttcagcatattttcataagctctacagga 615  Q
    |||||||||||||| ||| |||||||||||||  ||||| |||||||||| |||||    
T  37825199 gagcttatgacatgtccataagttgttttcaggttatttccataagctctccagga 37825144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 564 - 651
Target Start/End: Original strand, 49586933 - 49587020
Alignment:
Q  564 ttatgacatgcccacaagttgttttcagcatattttcataagctctacaggataacttacatgaaaacagtttgacttaattttatct 651  Q
    |||||||||  ||| |||||||||||||  |||||   ||| |||| || |||| |||| |||||||||||||||||| |||||||||    
T  49586933 ttatgacatatccataagttgttttcagtttatttctttaatctctccaagatagcttatatgaaaacagtttgactttattttatct 49587020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 561 - 622
Target Start/End: Complemental strand, 8933863 - 8933802
Alignment:
Q  561 agcttatgacatgcccacaagttgttttcagcatattttcataagctctacaggataactta 622  Q
    ||||||||||||| ||| ||||||  || ||| |||||||||||||||| || |||||||||    
T  8933863 agcttatgacatgtccaaaagttgcatttagcttattttcataagctctccaagataactta 8933802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 553 - 598
Target Start/End: Original strand, 12923311 - 12923356
Alignment:
Q  553 tttgagagagcttatgacatgcccacaagttgttttcagcatattt 598  Q
    |||| |||||||||||||||| ||| |||||||||||||| |||||    
T  12923311 tttgggagagcttatgacatgtccataagttgttttcagcttattt 12923356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 561 - 617
Target Start/End: Original strand, 27290895 - 27290951
Alignment:
Q  561 agcttatgacatgcccacaagttgttttcagcatattttcataagctctacaggata 617  Q
    ||||||||||||||||| ||| |||||||||| ||||| ||| | |||| |||||||    
T  27290895 agcttatgacatgcccataagctgttttcagcttatttccatgaactctgcaggata 27290951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 561 - 609
Target Start/End: Original strand, 51206492 - 51206540
Alignment:
Q  561 agcttatgacatgcccacaagttgttttcagcatattttcataagctct 609  Q
    |||||||||| |  ||| |||||||||||||| ||||||||||||||||    
T  51206492 agcttatgacctatccaaaagttgttttcagcttattttcataagctct 51206540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 579 - 651
Target Start/End: Original strand, 5131262 - 5131336
Alignment:
Q  579 aagttgttttcagcatattttcataagctctacaggataac--ttacatgaaaacagtttgacttaattttatct 651  Q
    |||||||||||||| ||||| |||||||||| ||||||| |  ||||||||||||| ||| |||| |||||||||    
T  5131262 aagttgttttcagcttatttccataagctctccaggatagcttttacatgaaaacattttaactttattttatct 5131336  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 563 - 605
Target Start/End: Complemental strand, 4691922 - 4691880
Alignment:
Q  563 cttatgacatgcccacaagttgttttcagcatattttcataag 605  Q
    ||||||||||||||| | |||||||||||| ||||||||||||    
T  4691922 cttatgacatgcccatatgttgttttcagcttattttcataag 4691880  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 563 - 649
Target Start/End: Complemental strand, 6428092 - 6428006
Alignment:
Q  563 cttatgacatgcccacaagttgttttcagcatattttcataagctctacaggataacttacatgaaaacagtttgacttaattttat 649  Q
    ||||||||||| ||| |||||| ||| ||||||||| |||||||||| ||   || |||| ||| | |||||||||||| |||||||    
T  6428092 cttatgacatgtccataagttgatttaagcatatttccataagctcttcatagtagcttatatggatacagtttgactttattttat 6428006  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 579 - 636
Target Start/End: Original strand, 18628555 - 18628610
Alignment:
Q  579 aagttgttttcagcatattttcataagctctacaggataacttacatgaaaacagttt 636  Q
    |||||||||||||| ||||| |||||||||| || ||||||||  |||||||||||||    
T  18628555 aagttgttttcagcttatttccataagctctccaagataactt--atgaaaacagttt 18628610  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 579 - 647
Target Start/End: Complemental strand, 4191776 - 4191710
Alignment:
Q  579 aagttgttttcagcatattttcataagctctacaggataacttacatgaaaacagtttgacttaatttt 647  Q
    ||||| || ||||| ||||| |||| ||||| ||||||||||||  ||||||||||||||||| |||||    
T  4191776 aagttcttctcagcttatttccatacgctctccaggataactta--tgaaaacagtttgactttatttt 4191710  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 562 - 623
Target Start/End: Complemental strand, 43824358 - 43824297
Alignment:
Q  562 gcttatgacatgcccacaagttgttttcagcatattttcataagctctacaggataacttac 623  Q
    ||||||| ||||  || |||||||||||||| ||||| |||||||| | |||||||||||||    
T  43824358 gcttatggcatgttcataagttgttttcagcttatttccataagctttccaggataacttac 43824297  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 566 - 622
Target Start/End: Original strand, 7694009 - 7694065
Alignment:
Q  566 atgacatgcccacaagttgttttcagcatattttcataagctctacaggataactta 622  Q
    ||||||||  || |||||||||||||| ||||| ||||| |||| ||||||||||||    
T  7694009 atgacatgttcataagttgttttcagcttatttccataaactctccaggataactta 7694065  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 584 - 622
Target Start/End: Complemental strand, 24097861 - 24097823
Alignment:
Q  584 gttttcagcatattttcataagctctacaggataactta 622  Q
    ||||||||| |||||||||||||||| ||||||||||||    
T  24097861 gttttcagcttattttcataagctctccaggataactta 24097823  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 583 - 620
Target Start/End: Complemental strand, 9395184 - 9395147
Alignment:
Q  583 tgttttcagcatattttcataagctctacaggataact 620  Q
    |||||||||| |||||||||||||||||||| ||||||    
T  9395184 tgttttcagcttattttcataagctctacagaataact 9395147  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 561 - 609
Target Start/End: Complemental strand, 1647312 - 1647264
Alignment:
Q  561 agcttatgacatgcccacaagttgttttcagcatattttcataagctct 609  Q
    |||||||||||||| || ||| |||||||||| ||||| ||||||||||    
T  1647312 agcttatgacatgctcataagctgttttcagcttatttccataagctct 1647264  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 615 - 651
Target Start/End: Complemental strand, 33192195 - 33192159
Alignment:
Q  615 ataacttacatgaaaacagtttgacttaattttatct 651  Q
    |||||||| |||||||||||||||||| |||||||||    
T  33192195 ataacttatatgaaaacagtttgactttattttatct 33192159  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 619 - 651
Target Start/End: Complemental strand, 33942148 - 33942116
Alignment:
Q  619 cttacatgaaaacagtttgacttaattttatct 651  Q
    ||||||||||||||||||||||| |||||||||    
T  33942148 cttacatgaaaacagtttgactttattttatct 33942116  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 615 - 651
Target Start/End: Original strand, 41851971 - 41852007
Alignment:
Q  615 ataacttacatgaaaacagtttgacttaattttatct 651  Q
    |||||||| ||||||||| ||||||||||||||||||    
T  41851971 ataacttatatgaaaacaatttgacttaattttatct 41852007  T

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Target: scaffold0003 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 561 - 622
Target Start/End: Complemental strand, 306402 - 306341
Alignment:
Q  561 agcttatgacatgcccacaagttgttttcagcatattttcataagctctacaggataactta 622  Q
    ||||||||||||||||| ||| |||||||||| || || ||||||||||  |||||| ||||    
T  306402 agcttatgacatgcccataagctgttttcagcttacttacataagctctctaggatagctta 306341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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