View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0750_high_10 (Length: 504)
Name: NF0750_high_10
Description: NF0750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0750_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 10 - 497
Target Start/End: Original strand, 46900755 - 46901242
Alignment:
| Q |
10 |
gcagagagccgtgtgttgggtcagacacaacctggcggagtagcctctgtcatgcaatccgccgctacacgaaatgagcaggctggaatcgtcggtcata |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46900755 |
gcagagagccgtgtgttgggtcagacacaacctggcggagtagcctctgtcatgcaatccgccgctacacgaaatgagcaggctggaatcgtcggtcata |
46900854 |
T |
|
| Q |
110 |
aagacgtcacagatgtcaccggtgaccgtggcgtgaccgtcacggaaactcaagtccccggaagacgcatcataaccgaaacagtcggtggacaggttct |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
46900855 |
aagacgtcacagatgtcaccggtgaccgtggcgtgaccgtcacggaaactcaagtccctggaagacgcatcataaccgaaacagtcggtggacaggttct |
46900954 |
T |
|
| Q |
210 |
gattctgaacctcactatgtgttttgtttttattttaaaatttcacctcgtattctgctaaacttgtcttgtcttgnnnnnnngattaatttaataatgt |
309 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
46900955 |
gattctgaacctcactatgtattttgtttttattttaaaatttcacctcgtattctgctaaacttgtcttgtcttgtttttctgattaatttaataatgt |
46901054 |
T |
|
| Q |
310 |
ttaaggttgtgggacaatttgttgaaccgactccagttcaagttggtctaaccggtgcggttcgagagagtgcattaaccatcggagaggcactagaggc |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46901055 |
ttaaggttgtgggacaatttgttgaaccgactccagttcaagttggtctaaccggtgcggttcgagagagtgcattaaccatcggagaggcactagaggc |
46901154 |
T |
|
| Q |
410 |
gacggcccacacggtgggtgacaagccggtggaacagagtgacgcctctgcgatacaagcggcggaggtgagagctacggggagtaat |
497 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46901155 |
gacggcccacacggtgggcgacaagccggtggaacagagtgacgcctctgcgatacaagcggcggaggtgagagctacggggagtaat |
46901242 |
T |
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