View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0750_high_13 (Length: 474)

Name: NF0750_high_13
Description: NF0750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0750_high_13
NF0750_high_13
[»] chr2 (3 HSPs)
chr2 (85-434)||(33136769-33137118)
chr2 (1-55)||(33136718-33136772)
chr2 (70-145)||(18558273-18558348)
[»] chr1 (11 HSPs)
chr1 (57-163)||(35265517-35265623)
chr1 (88-189)||(35228584-35228687)
chr1 (88-158)||(35295026-35295096)
chr1 (54-163)||(35273046-35273155)
chr1 (69-191)||(35477083-35477207)
chr1 (93-158)||(45534578-45534643)
chr1 (93-146)||(35193052-35193105)
chr1 (74-163)||(35203398-35203487)
chr1 (55-158)||(35222953-35223056)
chr1 (70-159)||(35146144-35146233)
chr1 (54-158)||(45526975-45527079)
[»] chr3 (3 HSPs)
chr3 (54-162)||(898643-898751)
chr3 (54-159)||(17663518-17663623)
chr3 (54-159)||(19246173-19246278)


Alignment Details
Target: chr2 (Bit Score: 322; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 85 - 434
Target Start/End: Original strand, 33136769 - 33137118
Alignment:
Q  85 cgctcctaccaaaaaagctctttatctcgctctatctgatcgccatatcatcatcgacaatggtaaaaaggtattcttcattatctaccaatttcttgaa 184  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33136769 cgcttctaccaaaaaagctctttatctcgctctatctgatcgccatatcatcatcgacaatggtaaaaaggtattcttcattatctaccaatttcttgaa 33136868  T
Q  185 tattaggcttattattaatgactatgctgttcaggaagttgttctagggcttgttatttagcattgtttcctgtgatcctccggcctgcagtcttgtatt 284  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33136869 tattaggcttattattaatgactatgctgttcaggaagttattatagggcttgttatttagcattgtttcctgtgatcctccggcctgcagtcttgtatt 33136968  T
Q  285 ttcgtttgtgtcgcttttgtctgctataccagtttttccgtagttatttttgctctttaatttgttatttgtagaccgtcttagtggttagtggctgcta 384  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  33136969 ttcgtctgtgtcgtttttgtctgctataccagtttttccgtagttatttttgctctttaatttgttatttgtagaccgtcttagtggttagtagctgcta 33137068  T
Q  385 gaaagggttttctggtttagggtcagttgggtttggcttgcttacacacc 434  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  33137069 gaaagggttttctggtttagggtcagttgggtttggcttgcttgcacacc 33137118  T

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Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 33136718 - 33136772
Alignment:
Q  1 ttccgacacggtgtggaatcgttttctgacttcccatcctcaaggcataaccgct 55  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33136718 ttccgacacggtgtggaatcgttttctgacttcccatcctcaaggcataaccgct 33136772  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 70 - 145
Target Start/End: Original strand, 18558273 - 18558348
Alignment:
Q  70 tccttcccatgcaaacgctcctaccaaaaaagctctttatctcgctctatctgatcgccatatcatcatcgacaat 145  Q
    |||||||  ||| |||||||| |||||||| ||||| |||||||| |||||||||||||  ||||| |||||||||    
T  18558273 tccttccattgccaacgctccaaccaaaaaggctctctatctcgccctatctgatcgccccatcatgatcgacaat 18558348  T

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Target: chr1 (Bit Score: 59; Significance: 8e-25; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 57 - 163
Target Start/End: Complemental strand, 35265623 - 35265517
Alignment:
Q  57 tcatctcaaattctccttcccatgcaaacgctcctaccaaaaaagctctttatctcgctctatctgatcgccatatcatcatcgacaatggtaaaaaggt 156  Q
    |||||||| | |||||||| | ||| ||||||||||||||||||||||| ||||||||||| |||||||| | ||||||||||||  ||| |||||||||    
T  35265623 tcatctcacactctccttcacttgccaacgctcctaccaaaaaagctctgtatctcgctctctctgatcgtcctatcatcatcgatcatgataaaaaggt 35265524  T
Q  157 attcttc 163  Q
    |||||||    
T  35265523 attcttc 35265517  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 88 - 189
Target Start/End: Complemental strand, 35228687 - 35228584
Alignment:
Q  88 tcctaccaaaaaagctctttatctcgctctatctgatcgccatatcatcatcgacaatggtaaaaaggtattcttcat--tatctaccaatttcttgaat 185  Q
    |||||||||||||| ||| ||| | |||||||||||||||| |||||||||||||||||||||||||||||| ||| |  || || ||||||||| ||||    
T  35228687 tcctaccaaaaaagatctctatattgctctatctgatcgccctatcatcatcgacaatggtaaaaaggtatttttcttcctaactgccaatttctcgaat 35228588  T
Q  186 atta 189  Q
    ||||    
T  35228587 atta 35228584  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 88 - 158
Target Start/End: Original strand, 35295026 - 35295096
Alignment:
Q  88 tcctaccaaaaaagctctttatctcgctctatctgatcgccatatcatcatcgacaatggtaaaaaggtat 158  Q
    |||||||||||| | |||||||||||| ||||||||||||| ||| ||||| ||| |||||||||||||||    
T  35295026 tcctaccaaaaaggatctttatctcgccctatctgatcgccctataatcattgaccatggtaaaaaggtat 35295096  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 54 - 163
Target Start/End: Complemental strand, 35273155 - 35273046
Alignment:
Q  54 ctatcatctcaaattctccttcccatgcaaacgctcctaccaaaaaagctctttatctcgctctatctgatcgccatatcatcatcgacaatggtaaaaa 153  Q
    |||| |||||| | |||||||||| | | |||  |||||||||||| | ||| ||||| |||||||||||||||| | ||||||||||  ||| ||||||    
T  35273155 ctattatctcacactctccttcccttaccaacattcctaccaaaaaggatctctatcttgctctatctgatcgccctgtcatcatcgatcatgataaaaa 35273056  T
Q  154 ggtattcttc 163  Q
    ||||||||||    
T  35273055 ggtattcttc 35273046  T

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Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 69 - 191
Target Start/End: Complemental strand, 35477207 - 35477083
Alignment:
Q  69 ctccttcccatgcaaacgctcctaccaaaaaagctctttatctcgctctatctgatcgccatatcatcatcgacaatggtaaaaaggtattcttcattat 168  Q
    ||||||||  ||| ||| |||| ||||| || ||||| | |||| |||||||||| |||| ||||||||||||||||| | |||||||||||||| ||||    
T  35477207 ctccttccattgccaacactccaaccaagaaggctctctttctcactctatctgaccgccctatcatcatcgacaatgctcaaaaggtattcttctttat 35477108  T
Q  169 --ctaccaatttcttgaatattagg 191  Q
      |  ||||||| ||||||||||||    
T  35477107 aacctccaattttttgaatattagg 35477083  T

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Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 93 - 158
Target Start/End: Complemental strand, 45534643 - 45534578
Alignment:
Q  93 ccaaaaaagctctttatctcgctctatctgatcgccatatcatcatcgacaatggtaaaaaggtat 158  Q
    ||||||| ||||||||||| |||||||||||||  | |||||||||||||||||| ||||||||||    
T  45534643 ccaaaaaggctctttatcttgctctatctgatcaacctatcatcatcgacaatggcaaaaaggtat 45534578  T

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Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 93 - 146
Target Start/End: Complemental strand, 35193105 - 35193052
Alignment:
Q  93 ccaaaaaagctctttatctcgctctatctgatcgccatatcatcatcgacaatg 146  Q
    ||||||||||||| ||||||||||| ||||||| || |||||||||||||||||    
T  35193105 ccaaaaaagctctgtatctcgctctctctgatctccctatcatcatcgacaatg 35193052  T

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Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 74 - 163
Target Start/End: Complemental strand, 35203487 - 35203398
Alignment:
Q  74 tcccatgcaaacgctcctaccaaaaaagctctttatctcgctctatctgatcgccatatcatcatcgacaatggtaaaaaggtattcttc 163  Q
    |||| ||| |||| ||| ||||||||| |||| ||||| ||||| ||||||  || ||||||||||||||||| | ||||||||||||||    
T  35203487 tcccttgctaacgttccaaccaaaaaatctctgtatctagctctctctgattcccctatcatcatcgacaatgatcaaaaggtattcttc 35203398  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 55 - 158
Target Start/End: Complemental strand, 35223056 - 35222953
Alignment:
Q  55 tatcatctcaaattctccttcccatgcaaacgctcctaccaaaaaagctctttatctcgctctatctgatcgccatatcatcatcgacaatggtaaaaag 154  Q
    |||||| ||| | |||||||||  |||||||  |||||| |||||  |||| ||||| || || ||| ||| || ||||||||||||| |||||||||||    
T  35223056 tatcatatcacactctccttcctttgcaaacattcctacaaaaaagtctctctatcttgccctctctaatcaccctatcatcatcgacgatggtaaaaag 35222957  T
Q  155 gtat 158  Q
    ||||    
T  35222956 gtat 35222953  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 159
Target Start/End: Original strand, 35146144 - 35146233
Alignment:
Q  70 tccttcccatgcaaacgctcctaccaaaaaagctctttatctcgctctatctgatcgccatatcatcatcgacaatggtaaaaaggtatt 159  Q
    |||||||| ||| |||  ||| |||||||| ||||| ||||||||||| | |||||  | ||||||||||||  ||||| ||||||||||    
T  35146144 tccttcccttgccaacattccaaccaaaaaggctctctatctcgctctctatgatcatcctatcatcatcgatcatggtcaaaaggtatt 35146233  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 54 - 158
Target Start/End: Complemental strand, 45527079 - 45526975
Alignment:
Q  54 ctatcatctcaaattctccttcccatgcaaacgctcctaccaaaaaagctctttatctcgctctatctgatcgccatatcatcatcgacaatggtaaaaa 153  Q
    ||||||||||| | || ||||| |  ||||| |||||| ||||||| ||||| |||||  | ||||| ||||| | ||||||||||||| |||  |||||    
T  45527079 ctatcatctcacagtcaccttctctagcaaatgctccttccaaaaaggctctctatcttaccctatccgatcgacctatcatcatcgacgatgccaaaaa 45526980  T
Q  154 ggtat 158  Q
    |||||    
T  45526979 ggtat 45526975  T

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Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 54 - 162
Target Start/End: Original strand, 898643 - 898751
Alignment:
Q  54 ctatcatctcaaattctccttcccatgcaaacgctcctaccaaaaaagctctttatctcgctctatctgatcgccatatcatcatcgacaatggtaaaaa 153  Q
    ||||||||||| |||||||||||| ||| |||||||| |||||||| || || ||||||||||| || ||| |||  |||||||||||  |||||  |||    
T  898643 ctatcatctcacattctccttcccttgccaacgctcccaccaaaaaggccctctatctcgctctctccgatagcccaatcatcatcgatcatggtcgaaa 898742  T
Q  154 ggtattctt 162  Q
    |||||||||    
T  898743 ggtattctt 898751  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 54 - 159
Target Start/End: Original strand, 17663518 - 17663623
Alignment:
Q  54 ctatcatctcaaattctccttcccatgcaaacgctcctaccaaaaaagctctttatctcgctctatctgatcgccatatcatcatcgacaatggtaaaaa 153  Q
    ||||||||| | | ||||||||||  |||||| ||  ||||||||||| ||| ||  | |||||||||||||||| ||||||||||||| | |||| |||    
T  17663518 ctatcatcttacaatctccttccctggcaaacacttttaccaaaaaagatctctacatggctctatctgatcgccctatcatcatcgaccagggtacaaa 17663617  T
Q  154 ggtatt 159  Q
    ||||||    
T  17663618 ggtatt 17663623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 159
Target Start/End: Original strand, 19246173 - 19246278
Alignment:
Q  54 ctatcatctcaaattctccttcccatgcaaacgctcctaccaaaaaagctctttatctcgctctatctgatcgccatatcatcatcgacaatggtaaaaa 153  Q
    ||||||||| | | |||||||| |  |||||| ||  ||||||||||| ||| ||  | |||||||||||||||| ||||||||||||  | |||| |||    
T  19246173 ctatcatcttacaatctccttcactggcaaacacttttaccaaaaaagatctctacatggctctatctgatcgccctatcatcatcgatcagggtacaaa 19246272  T
Q  154 ggtatt 159  Q
    ||||||    
T  19246273 ggtatt 19246278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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