View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0750_high_15 (Length: 454)
Name: NF0750_high_15
Description: NF0750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0750_high_15 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 30 - 454
Target Start/End: Complemental strand, 28064648 - 28064225
Alignment:
| Q |
30 |
gatacaacgtatatatgtgaatgatcgttaactagtcattgaatcttgagatgcccatcctctcttttgcaactctagtcgcaacgcctgtcatatagtc |
129 |
Q |
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| T |
28064648 |
gatacaacgtatatatgtgaatgatcgttaactagtcattgagtcttgagatgcccatcctctcttttgcaactctagtcgcaacgcctgtcacatagtc |
28064549 |
T |
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| Q |
130 |
aaaaatctcgattgttagatcacgatcatatgatttatattttaatatatatgttaaagttgatttaatgaaattaaaatacaaatagtcagatcttatc |
229 |
Q |
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| T |
28064548 |
aaaaatctcgattgttagatcacgatcatatgatttatattttaatatatatgttaaagttgatttaatgaaattaaaatacgagtagtctgatcttttc |
28064449 |
T |
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| Q |
230 |
caacgatcgaggatcactacatagctacaactatgtacttaggctatagacaatcttgatcagtagacacacacataagtcacaatgagattgtaccttg |
329 |
Q |
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| T |
28064448 |
caacgattgaggatcactacatagctacaac-atgtacttaggctatagacaatcttgatctgtagacacacacataagtcacaatgagattgtaccttg |
28064350 |
T |
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| Q |
330 |
atccttcttctattcacatcaaaatcaaaattcccaacccttgatgctgatcgatactcaacaattgagtccttatcttgtggaaaccagaactcaacat |
429 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28064349 |
attcttcttctattcacatcaaaatcaaaattcccaacccttgctgctgatcgatactcaacaattgagtccttatcttgtggaaaccagaactcaacat |
28064250 |
T |
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| Q |
430 |
catcctcaaactgtttgaatactaa |
454 |
Q |
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| T |
28064249 |
catccacaaactgtttgaatactaa |
28064225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 323 - 445
Target Start/End: Original strand, 7968683 - 7968805
Alignment:
| Q |
323 |
taccttgatccttcttctattcacatcaaaatcaaaattcccaacccttgatgctgatcgatactcaacaattgagtccttatcttgtggaaaccagaac |
422 |
Q |
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|||||| || ||| |||||||||||||||||||||| || || | |||||| || ||||||||||| || |||||| ||||| || |||| ||||| ||| |
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| T |
7968683 |
tacctttattctttttctattcacatcaaaatcaaagtttcccaaccttgacgcagatcgatactccacgattgagcccttacctggtgggaaccaaaac |
7968782 |
T |
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| Q |
423 |
tcaacatcatcctcaaactgttt |
445 |
Q |
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| T |
7968783 |
tcaacatcgtctacaaactgttt |
7968805 |
T |
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