View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0750_high_17 (Length: 445)
Name: NF0750_high_17
Description: NF0750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0750_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 16 - 420
Target Start/End: Complemental strand, 3675876 - 3675472
Alignment:
| Q |
16 |
atgtgaacttgtagtcttggcatgaaacacgccaacagaaacaaaatgaaatcatcgaccctgctactgtagtgtatgtatatttgcataataaaagtca |
115 |
Q |
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| T |
3675876 |
atgtgaacttgtagtcttgacatgaagcacgccaacagaaacaaaatgaaatcatcgaccctgctactgtagtgtatgtatatttgcataataaaagtca |
3675777 |
T |
|
| Q |
116 |
atatttcttagaaccnnnnnnntagtgaaccttttnnnnnnnntagagtatactttattttaagtcaacttttgaggatagagaatcaacttatacagct |
215 |
Q |
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||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3675776 |
atatttcttagaaccaaaaaaatagtgaaccttttaaaaaaaatagagtatactttattttaagtcaacttttgaggatagagaatcaacttatacagct |
3675677 |
T |
|
| Q |
216 |
ggtctgaaatcgaaatcgagtgtctgttgatatcgagaccatgattttgagtaacgaannnnnnnacaaaattttagaagccagcaggtcagatatattg |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
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| T |
3675676 |
ggtctgaaatcgaaatcgagtgtctgttgatatcgagactacgattttgagtagcgaatttttttacaaaattttagaagccagcaggtcagatatattg |
3675577 |
T |
|
| Q |
316 |
atacagtggaccaatcacaatgtgcaaacaaccagcttcaatcctatatattaacacaagatgcaatgcaattgccatattctagcctataagcaattac |
415 |
Q |
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|||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
3675576 |
atacagcggaccaatcacaatgtgcaaaaaaccagcttcaatcctatatattaacacaagatgcaatgcaattgccacattctagcctataagcaattac |
3675477 |
T |
|
| Q |
416 |
agggt |
420 |
Q |
| |
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||||| |
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| T |
3675476 |
agggt |
3675472 |
T |
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