View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0750_high_19 (Length: 420)
Name: NF0750_high_19
Description: NF0750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0750_high_19 |
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Alignment Details
Target: chr5 (Bit Score: 382; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 409
Target Start/End: Original strand, 39586973 - 39587382
Alignment:
| Q |
1 |
gtgaaggatggatagaaggtgggagtcttggggttagaagggaccta-gaaaacaaggttgtgttgttgggatcaaagacttgttattgctcgatcgggc |
99 |
Q |
| |
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||||||||||||| ||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39586973 |
gtgaaggatggatggaaggtgggtgtcttggggtcagaagggacctttgaaaacaaggttgtgttgttgggatcaaagacttgttattgctcgatcgggc |
39587072 |
T |
|
| Q |
100 |
tatctcggcccatgatacaagaaacatgtttgcagaataggcgtcggctattcgatggtcaaaattgcacgccactactaacccaccacatttcatccaa |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39587073 |
tatctcggcccatgatacaagaaacatgtttgcagaataggcgtcggctattcgatggtcaaaattgcacgccactactaacccaccacatttcatccaa |
39587172 |
T |
|
| Q |
200 |
gttgcctgcacagttacaagatgatgataattctttcactattctaataatcccttgagatcaaaatgtttttgtaaatatgaacaaatattaaaaactt |
299 |
Q |
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|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39587173 |
gttgcctgcacagttacaagatgataataattctttcactattctaataatcccttgagatcaaaatgtttttgtaaatatgaacaaatattaaaaactt |
39587272 |
T |
|
| Q |
300 |
tcacctgaacagcaagtacaccatatttcttctttggaacaagcttcccttcaatggtttcctctggcttatacaaatcgagagattgcaactcaacatc |
399 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39587273 |
tcacctgaacagcaagtacaccatatttcttctttggaacaagcttcccttcaatggtttcctctggcttatacaaatcgagagattgcaactcaacatc |
39587372 |
T |
|
| Q |
400 |
agcaacagct |
409 |
Q |
| |
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|||||||||| |
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|
| T |
39587373 |
agcaacagct |
39587382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 2 - 218
Target Start/End: Original strand, 39553864 - 39554081
Alignment:
| Q |
2 |
tgaaggatggatagaaggtgggagtcttggggttagaagggacc-tagaaaacaaggttgtgttgttgggatcaaagacttgttattgctcgatcgggct |
100 |
Q |
| |
|
|||||||||||| ||||||||| ||| |||||| ||||| |||| | ||||||||||||| ||||||||||||||||||||||||| | | || ||| |
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|
| T |
39553864 |
tgaaggatggatggaaggtgggcgtcgtggggtcagaagtgaccgtcgaaaacaaggttgcgttgttgggatcaaagacttgttatcattgggccgagct |
39553963 |
T |
|
| Q |
101 |
atctcggcccatgatacaagaaacatgtttgcagaataggcgtcggctattcgatggtcaaaattgcacgccactactaacccaccacatttcatccaag |
200 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||| || ||||| |||||||||||| |||| ||||||||||| ||||||||||||||||||| |
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| T |
39553964 |
atctcggcccatgatacaaggaacatgtttgcagaataggcatcagctatacgatggtcaaaagtgcaagccactactaaaccaccacatttcatccaag |
39554063 |
T |
|
| Q |
201 |
ttgcctgcacagttacaa |
218 |
Q |
| |
|
||||||||| ||| |||| |
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|
| T |
39554064 |
ttgcctgcatagtaacaa |
39554081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 39543844 - 39544062
Alignment:
| Q |
1 |
gtgaaggatggatagaaggtgggagtcttggggttagaagggacc-tagaaaacaaggttgtgttgttgggatcaaagacttgttattgctcgatcgggc |
99 |
Q |
| |
|
|||||||||| || ||||||||| ||| |||||| | ||| |||| | |||||||||||| |||||||||||||||||||||||||| | | ||| || |
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|
| T |
39543844 |
gtgaaggatgtatggaaggtgggcgtcgtggggtcataagtgaccgtctaaaacaaggttgcattgttgggatcaaagacttgttattgttgggtcgagc |
39543943 |
T |
|
| Q |
100 |
tatctcggcccatgatacaagaaacatgtttgcagaataggcgtcggctattcgatggtcaaaattgcacgccactactaacccaccacatttcatccaa |
199 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| ||||| ||||| |||||||||||| |||| ||||||||||| ||||||||||||||||| |
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|
| T |
39543944 |
tatctcggcccatgatacaaggaacatgtttgcagaatatgcgtccgctatacgatggtcaaaagtgcaagccactactaatccaccacatttcatccat |
39544043 |
T |
|
| Q |
200 |
gttgcctgcacagttacaa |
218 |
Q |
| |
|
|||| ||||| ||| |||| |
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|
| T |
39544044 |
gttgtctgcatagtaacaa |
39544062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 298 - 409
Target Start/End: Original strand, 39544840 - 39544951
Alignment:
| Q |
298 |
tttcacctgaacagcaagtacaccatatttcttctttggaacaagcttcccttcaatggtttcctctggcttatacaaatcgagagattgcaactcaaca |
397 |
Q |
| |
|
|||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||| ||||| ||||| |||||||||| ||||||||| ||||||||| |
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|
| T |
39544840 |
tttcacctgagcagcaagcacaccatgtttcttctttggaacaagcttcccttcaacagtttcatctggattatacaaattgagagattgtaactcaaca |
39544939 |
T |
|
| Q |
398 |
tcagcaacagct |
409 |
Q |
| |
|
||||||| |||| |
|
|
| T |
39544940 |
tcagcaaaagct |
39544951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 302 - 409
Target Start/End: Original strand, 39554158 - 39554265
Alignment:
| Q |
302 |
acctgaacagcaagtacaccatatttcttctttggaacaagcttcccttcaatggtttcctctggcttatacaaatcgagagattgcaactcaacatcag |
401 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||||||||| |||||||||| ||||| ||||| |||||||||| ||||||||| ||||||||||||| |
|
|
| T |
39554158 |
acctgaacagcaagcacaccatgtttcttctttggaacaagtttcccttcaacagtttcatctggattatacaaattgagagattgtaactcaacatcag |
39554257 |
T |
|
| Q |
402 |
caacagct |
409 |
Q |
| |
|
||| |||| |
|
|
| T |
39554258 |
caaaagct |
39554265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 96 - 189
Target Start/End: Original strand, 17503777 - 17503870
Alignment:
| Q |
96 |
gggctatctcggcccatgatacaagaaacatgtttgcagaataggcgtcggctattcgatggtcaaaattgcacgccactactaacccaccaca |
189 |
Q |
| |
|
|||| ||||||||||||||||| || |||||||||| ||||| || || ||||| ||||| ||||| |||| |||||||||| ||||||||| |
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|
| T |
17503777 |
gggccatctcggcccatgatactaggaacatgtttgttgaatatgcatctgctatgcgatgatcaaatgtgcatgccactactatcccaccaca |
17503870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 101 - 189
Target Start/End: Original strand, 17475659 - 17475747
Alignment:
| Q |
101 |
atctcggcccatgatacaagaaacatgtttgcagaataggcgtcggctattcgatggtcaaaattgcacgccactactaacccaccaca |
189 |
Q |
| |
|
||||||||||||||||| | |||||||||| || ||||| || ||||| ||||| ||||| |||| |||||||| | ||||||||| |
|
|
| T |
17475659 |
atctcggcccatgatactaagaacatgtttgttgagtaggcatctgctatgcgatgatcaaatgtgcatgccactacaatcccaccaca |
17475747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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