View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0750_high_28 (Length: 364)
Name: NF0750_high_28
Description: NF0750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0750_high_28 |
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Alignment Details
Target: chr7 (Bit Score: 162; Significance: 2e-86; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 79 - 248
Target Start/End: Original strand, 11225518 - 11225687
Alignment:
| Q |
79 |
ccataacataaaaataacagtttggcacttgacaaaagtctcaaatatctaaaatgtttcgcatcaaaattttatttcagatcaaacgctaacaagcatg |
178 |
Q |
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| T |
11225518 |
ccataacataaaaataacagtttggcacttgacaaaaatctcaaatatctaaaatgtttcgcatcaaaattttatttcagatcaaacgctaacaagcatg |
11225617 |
T |
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| Q |
179 |
gatcgaaaatattaacgaaggacatggcacatgagcacaaaaattaaaatttgacacacccattttttaa |
248 |
Q |
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| T |
11225618 |
gatcgaaaatattaacgaaggacatgacacatgagcacaaaaattaaaatttgacacacccattttttaa |
11225687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 248 - 352
Target Start/End: Original strand, 11240373 - 11240477
Alignment:
| Q |
248 |
atgtggattatgtgctttatttgaacataagtggatatgagtatatggttatacttttatatgataatgcaagtgtattttgtaaatttataatgaatgg |
347 |
Q |
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| T |
11240373 |
atgtggattatgtgctttatttgaacataagtggatatgagtatatggttatacttttatatgataatgctagtgtattttgtaaatttataatgaatgg |
11240472 |
T |
|
| Q |
348 |
agaat |
352 |
Q |
| |
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||||| |
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| T |
11240473 |
agaat |
11240477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 248 - 352
Target Start/End: Original strand, 11240630 - 11240734
Alignment:
| Q |
248 |
atgtggattatgtgctttatttgaacataagtggatatgagtatatggttatacttttatatgataatgcaagtgtattttgtaaatttataatgaatgg |
347 |
Q |
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| T |
11240630 |
atgtggattatgtgctttatttgaacataagtggatatgagtatatggttatacttttatatgataatgctagtgtattttgttgatttatgatgaatgg |
11240729 |
T |
|
| Q |
348 |
agaat |
352 |
Q |
| |
|
||||| |
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|
| T |
11240730 |
agaat |
11240734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 29 - 80
Target Start/End: Original strand, 11225443 - 11225494
Alignment:
| Q |
29 |
aaatttgagttcattttatccaaaatctagtcggtacaaacaatagatctcc |
80 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
11225443 |
aaatttgagttcattttatccaaaatccagtcggtacaaacaatagatctcc |
11225494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 248 - 352
Target Start/End: Original strand, 11864305 - 11864409
Alignment:
| Q |
248 |
atgtggattatgtgctttatttgaacataagtggatatgagtatatggttatacttttatatgataatgcaagtgtattttgtaaatttataatgaatgg |
347 |
Q |
| |
|
|||||||||||||||||||| |||| ||| |||| || ||| |||||||||||||||| ||||| |||| |||||| |||| |||||| |||||||| |
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| T |
11864305 |
atgtggattatgtgctttatgtgaatatagatggagataagtctatggttatacttttaaatgatgatgctagtgtaatttgatgatttatgatgaatgg |
11864404 |
T |
|
| Q |
348 |
agaat |
352 |
Q |
| |
|
||||| |
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|
| T |
11864405 |
agaat |
11864409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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