View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0750_high_3 (Length: 622)
Name: NF0750_high_3
Description: NF0750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0750_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 514; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 1 - 534
Target Start/End: Complemental strand, 49545496 - 49544963
Alignment:
| Q |
1 |
agaatgttcagtagcacctcacactccttaacaaggttgttaagcacatcagtttcgaaaaagggctggttcagaacctcttggataaacggcaagcgaa |
100 |
Q |
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| T |
49545496 |
agaatgttcagtagcacctcacactccttaacaaggttgttaagcacatcagtttcgaaaaagggctggttcagaacctcttggataaacggcaagcgaa |
49545397 |
T |
|
| Q |
101 |
gtagtccaccagttcgcttatcgtgtttctttattatcttcactaaacctgcataaacattcatgatatataatctaataaatttctcttttcaaatgaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49545396 |
gtagtccaccagttcgcttatcgtgtttctttattatcttcactaaacctgcataaacattcatgatatataatctaataaatttctcttttcaaatgaa |
49545297 |
T |
|
| Q |
201 |
ttaaaaacacatacaagtcaacatttacattattcatgaatatatgactatatcagatcttagattagaatttagatcatgcctgtgtagttaagtgcac |
300 |
Q |
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||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49545296 |
ttaaaaacacacacaagtcaacagttacattattcatgaatatataactatatcagatcttagattagaatttagatcatgcctgtgtagttaagtgcac |
49545197 |
T |
|
| Q |
301 |
tatagttctccaacaaaaccatctccccatggaagtcaactatttccctccataatgacatcaactccacatctgaataatccatgaccctgtcaactct |
400 |
Q |
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| T |
49545196 |
tatagttctccaacaaaaccatctccccatggaagtcaactatttccctccataatgacatcaactccaaatctgaataatccatgaccctgtcaactct |
49545097 |
T |
|
| Q |
401 |
gtcttgcaactcctgcataaagaaaattacgaaacatacaacatatgtcaaggccggaccaatacatattgaggcatacgacggatttaaaaataaggct |
500 |
Q |
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| T |
49545096 |
gtcttgcaactcctgcataaagaaaattacgaaacatacaacatatgtcaaggctggaccaatacatattgaggcatacgacggatttaaaaataaggct |
49544997 |
T |
|
| Q |
501 |
acctatgtttatgttaccttccatttgatgatgt |
534 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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| T |
49544996 |
acctatgtttatgttaccttccatttgatgatgt |
49544963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 15 - 153
Target Start/End: Original strand, 2469028 - 2469166
Alignment:
| Q |
15 |
cacctcacactccttaacaaggttgttaagcacatcagtttcgaaaaagggctggttcagaacctcttggataaacggcaagcgaagtagtccaccagtt |
114 |
Q |
| |
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||||||||||||||| ||||| |||||||||||||| ||| ||| || |||||||||| || ||||||||||| || || ||||||||| |||||||| |
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| T |
2469028 |
cacctcacactccttcacaagcttgttaagcacatcgattttgaagaatggctggttcaagacatcttggataaaaggtaaccgaagtagtgcaccagtt |
2469127 |
T |
|
| Q |
115 |
cgcttatcgtgtttctttattatcttcactaaacctgca |
153 |
Q |
| |
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|||||||| | ||||||||||||||| || ||||||||| |
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| T |
2469128 |
cgcttatcatatttctttattatcttaaccaaacctgca |
2469166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 282 - 367
Target Start/End: Original strand, 2469838 - 2469923
Alignment:
| Q |
282 |
cctgtgtagttaagtgcactatagttctccaacaaaaccatctccccatggaagtcaactatttccctccataatgacatcaactc |
367 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||| ||||| || || ||||||||||||| || || ||||||||| |
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| T |
2469838 |
cctgtgtagttaagtgcactatagttctctaacaaaaccatctctccatgaaaatccactatttccctccctactgtcatcaactc |
2469923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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