View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0750_high_30 (Length: 344)
Name: NF0750_high_30
Description: NF0750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0750_high_30 |
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| [»] scaffold0657 (1 HSPs) |
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Alignment Details
Target: scaffold0657 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: scaffold0657
Description:
Target: scaffold0657; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 27 - 246
Target Start/End: Original strand, 7950 - 8170
Alignment:
| Q |
27 |
ttatatgaaggacaatgtgcaatcacaaaagggatagacaaatgtatcaaacaaacataaataagactttatatcttaatataaagcagtccacacctca |
126 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
7950 |
ttatatgaaggacaatgtgcaatcacaaaagggatagacaaatgtatcaaacaaacataaataggactttatatcttaatataaagcagtccacacctca |
8049 |
T |
|
| Q |
127 |
aaactattcacaccacaatgcaagataccacaaatttaattccagtaatggttcctacctctacaatttcatgtataaaaattagtcaaatagatcctaa |
226 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8050 |
aaactattcacaccacaatgcaagataccacaaatttaattccagtaatggttcctacctctacaatttcatgtataaaaattagtcaaatagatcctaa |
8149 |
T |
|
| Q |
227 |
acataact-aaatatttatgt |
246 |
Q |
| |
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|||||||| |||||||||||| |
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| T |
8150 |
acataactaaaatatttatgt |
8170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 27 - 246
Target Start/End: Original strand, 19814115 - 19814335
Alignment:
| Q |
27 |
ttatatgaaggacaatgtgcaatcacaaaagggatagacaaatgtatcaaacaaacataaataagactttatatcttaatataaagcagtccacacctca |
126 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
19814115 |
ttatatgaaggacaatgtgcaatcacaaaagggatagacaaatgtatcaaacaaacataaataggactttatatcttaatataaagcagtccacacctca |
19814214 |
T |
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| Q |
127 |
aaactattcacaccacaatgcaagataccacaaatttaattccagtaatggttcctacctctacaatttcatgtataaaaattagtcaaatagatcctaa |
226 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19814215 |
aaactattcacaccacaatgcaagataccacaaatttaattccagtaatggttcctacctctacaatttcatgtataaaaattagtcaaatagatcctaa |
19814314 |
T |
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| Q |
227 |
acataact-aaatatttatgt |
246 |
Q |
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|||||||| |||||||||||| |
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| T |
19814315 |
acataactaaaatatttatgt |
19814335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 27 - 246
Target Start/End: Original strand, 1203037 - 1203256
Alignment:
| Q |
27 |
ttatatgaaggacaatgtgcaatcacaaaagggatagacaaatgtatcaaacaaacataaataagactttatatcttaatataaagcagtccacacctca |
126 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |
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| T |
1203037 |
ttatataaaggacaatgtgcaatcacaaaagggatagacaaatgtatcaaacaaacataaataggactttatatcttaatataaagcagtccacacttca |
1203136 |
T |
|
| Q |
127 |
aaactattcacaccacaatgcaagataccacaaatttaattccagtaatggttcctacctctacaatttcatgtataaaaattagtcaaatagatcctaa |
226 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1203137 |
aaactattcacaccacaatgcaagataccacaaatttaatttcagtaatggttcctacctctacaatttcatgtataaaaattagtcaaatagatcctaa |
1203236 |
T |
|
| Q |
227 |
acataactaaatatttatgt |
246 |
Q |
| |
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|||||||||||||||||||| |
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| T |
1203237 |
acataactaaatatttatgt |
1203256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 168; Significance: 5e-90; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 38 - 229
Target Start/End: Complemental strand, 42863089 - 42862898
Alignment:
| Q |
38 |
acaatgtgcaatcacaaaagggatagacaaatgtatcaaacaaacataaataagactttatatcttaatataaagcagtccacacctcaaaactattcac |
137 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
42863089 |
acaatgtgcaatcacaaaagggatagaccaatgtatcaaacaaacataaataggactttatatcttaatataaagcagtccacacatcaaaactattcac |
42862990 |
T |
|
| Q |
138 |
accacaatgcaagataccacaaatttaattccagtaatggttcctacctctacaatttcatgtataaaaattagtcaaatagatcctaaaca |
229 |
Q |
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|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
42862989 |
accacaatgcaacataccacaaatttaactccagtaatggttcctacctctacaatttcatgtataaaaattaatcaaatagatcctaaaca |
42862898 |
T |
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