View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0750_high_38 (Length: 316)
Name: NF0750_high_38
Description: NF0750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0750_high_38 |
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Alignment Details
Target: chr4 (Bit Score: 173; Significance: 5e-93; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 68 - 293
Target Start/End: Complemental strand, 34687853 - 34687624
Alignment:
| Q |
68 |
aaaatgatttgggaacttaccgtactaaatagcattt----ctccttaaacatatatttttcaaatgattaattgatatgtatgtgatctatgtgtgtcc |
163 |
Q |
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| T |
34687853 |
aaaatgatttgggaacttaccatactaaataacattaattactccttaaacatatatttttcaaatgattaattgatatgtatgtgatctatgtgtgtcc |
34687754 |
T |
|
| Q |
164 |
aaatcatttatatttataaattgtgtctaagcaattgttgttcactcataatatatattagtaaaatactccatggtagataagaaaaaagttgcatacc |
263 |
Q |
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|||||||||||||| ||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34687753 |
aaatcatttatattggtaattagtgtctaagtaattgttgttcactcataatatatattagtaaaatactccatggtagataagaaaaaagttgcatacc |
34687654 |
T |
|
| Q |
264 |
agataataatcagcgccatggtcgagtgag |
293 |
Q |
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|||||||||||||| ||||||| ||||||| |
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| T |
34687653 |
agataataatcagccccatggtagagtgag |
34687624 |
T |
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