View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0750_high_4 (Length: 612)
Name: NF0750_high_4
Description: NF0750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0750_high_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 64 - 364
Target Start/End: Original strand, 2125563 - 2125858
Alignment:
| Q |
64 |
tttcaatgaatggaactgaaataaattaagtaacttggaggaaattaaatatgcaaacagaaaaaggaacatcgatagnnnnnnnn--gaggggtaataa |
161 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |||||||||| | |
|
|
| T |
2125563 |
tttcaatgaatggaactgaaataaattaa----cttggaggaaat-----atgcaaacagaaaaaggaacatcgatagttttttttttgaggggtaatca |
2125653 |
T |
|
| Q |
162 |
tcatcaatagttgctaatcattttttactgatatctacattatggcagtatgaaatctgttattgagcgctacaacaaacagaaagaggaacaacatcag |
261 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2125654 |
tca--aatagttgctaatcattttttactgatatctacattatggcagtatgaaatctgttattgagcgctacaacaaacagaaagaggaacaacatcag |
2125751 |
T |
|
| Q |
262 |
ctaatgaatccagcttcagaagtgaaggtaactatttctatactattcacctagttagttgtgaaacatcaag----ttactaaaaacattcataatacc |
357 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
2125752 |
ctaatgaatccagattcagaagtgaaggtaactatttctatactattcacctagttagttgtgaaacatcaagttaattactaaaaacattcataatacc |
2125851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 163; E-Value: 9e-87
Query Start/End: Original strand, 368 - 584
Target Start/End: Original strand, 2125899 - 2126116
Alignment:
| Q |
368 |
atccaaaccatcaccatgttgtaattatgggagtgtagaaactaggtcattatatcattaacagatttatggggtggttggnnnnnnnnn-cataaacac |
466 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
2125899 |
atccaaaccatcaccatgttataattattggagtgtagaaactaggtcattataacattaacacatttatggggtggttggaaaaaaaaaacataaacac |
2125998 |
T |
|
| Q |
467 |
atgtaaaacattgcttgtagtatcttatttcaatccatcaatttatctatatccttttgttgttgtgttttacttacaagaacttttattttggtgttat |
566 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2125999 |
atgtaaaacattgcttgtagtatcttatttcaatccatcaatttatctatatccttttgttgttgtgttttacttacaagaacttttattttggtgttat |
2126098 |
T |
|
| Q |
567 |
gttagtctgtatgttgtc |
584 |
Q |
| |
|
||||||||| |||||||| |
|
|
| T |
2126099 |
gttagtctgcatgttgtc |
2126116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 4106 times since January 2019
Visitors: 4827