View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0750_high_41 (Length: 299)
Name: NF0750_high_41
Description: NF0750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0750_high_41 |
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Alignment Details
Target: chr7 (Bit Score: 173; Significance: 5e-93; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 59 - 231
Target Start/End: Original strand, 48164205 - 48164377
Alignment:
| Q |
59 |
catcatcaatttctacgttgcgctgcttcttttctcttttcttgtatataactattatgcaaatcaaaggccatggctcgccaccttgtctttgcattta |
158 |
Q |
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| T |
48164205 |
catcatcaatttctacgttgcgctgcttcttttctcttttcttgtatataactattatgcaaatcaaaggccatggctcgccaccttgtctttgcattta |
48164304 |
T |
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| Q |
159 |
tcatttttgctatttttatacactctctatcttctgcacccaatgacacacaaggtcagctcaatttccatac |
231 |
Q |
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| T |
48164305 |
tcatttttgctatttttatacactctctatcttctgcacccaatgacacacaaggtcagctcaatttccatac |
48164377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 222 - 299
Target Start/End: Complemental strand, 48162227 - 48162150
Alignment:
| Q |
222 |
atttccatacataattaagggaaaatgtcaatgagcatttttcttaaacacttgttaaagaaataaataaaaaagctt |
299 |
Q |
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| T |
48162227 |
atttacatacataattaagggaaaatgtcaatgagtatttttcttaaacacttgttaaagaaataaataaaaaagctt |
48162150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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