View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0750_high_45 (Length: 287)
Name: NF0750_high_45
Description: NF0750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0750_high_45 |
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Alignment Details
Target: chr1 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 129 - 258
Target Start/End: Original strand, 25690655 - 25690784
Alignment:
| Q |
129 |
cgatgttattagtcgaaccaacatcttggtctctccatcaccaccaacctccatggttcaattctcaaatccatgaaaacacaccccattacaacctcaa |
228 |
Q |
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| T |
25690655 |
cgatgttattagtcgaaccaacatcttggtctctccatcaccaccaacctccatggttcaattctcaaatccatgaaaacacaccccattacaacctcaa |
25690754 |
T |
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| Q |
229 |
aaacatagaagatgaagaattagacaccac |
258 |
Q |
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| T |
25690755 |
aaacatagaagatgaagaattagacaccac |
25690784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 10 - 106
Target Start/End: Original strand, 25690536 - 25690632
Alignment:
| Q |
10 |
tctctctatcctttaatattcctcttcaattttcacnnnnnnnnnnnnnnnctttccttgttacatggatctttcagaaacatcactctggtggact |
106 |
Q |
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|||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
25690536 |
tctctctatcctttaatattcctcatcaattttcactttttttctttctttctttctttgttacatggatctttcagaaacatcactctggtggact |
25690632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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